Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2002


 P. Bohannon, J. Freire, P. Roy, J. Sim\'eon. “From XML Schema to Relations: A Cost-Based Approach to XML Storage,” In International Conference on Data Engineering, IEEE Computer Society, Los Alamitos, CA, USA pp. 64. 2002.
ISBN: 0-7695-1531-2


O. Byutner, G.D. Smith. “Viscoelastic Properties of Polybutadiene in the Glassy Regime from Molecular Dynamic Simulations,” In Macromolecules, Vol. 35, No. 9, pp. 3769--3771. 2002.
DOI: 10.1021/ma0105690


Z. Chen, S. Pizer, E. Chaney, S. Joshi. “Medical Image Synthesis via Monte Carlo Simulation,” In Medical Image Computing and Computer-Assisted Intervention (MICCAI), Edited by T Dohi and R Kikinis, pp. 347--354. 2002.


L.J.K. Durbeck, M. Berzins. “Unstructured Tetrahedral Mesh Quality Analysis Using an Interactive Haptic and Visual Interface,” In Comp. & Vis. Sci., Vol. 5, No. 3, Springer-Verlag, pp. 179--192. 2002.


P.T. Fletcher, S.M. Pizer, G. Gash, S. Joshi. “Deformable M-rep segmentation of object complexes,” In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), pp. 26--29. 2002.


J. Freire, J. Haritsa, M. Ramanath, P. Roy, J. Simeon. “StatiX: Making XML Count,” In Proceedings of the 2002 ACM SIGMOD International Conference on Management of Data, pp. 181--191. 2002.


J.D. de St. Germain, A. Morris, S.G. Parker, A.D. Malony, S. Shende. “Integrating Performance Analysis in the Uintah Software Development Cycle,” In Proceedings of The 4th International Symposium on High Performance Computing, pp. 190--206. May 15-17, 2002.


C.E. Goodyer, M. Berzins. “Eclipse and Ellipse: PSEs for EHL Solutions using IRIS Explorer and SCIRun,” In Proceedings of the International Conference on Computational Science (ICCS) 2002, Amsterdam, The Netherlands, Vol. 2329, Edited by P.M.A. Sloot and C.J.K. Tan and J.J. Dongarra and A.G. Hoekstra, Springer Berlin, pp. 523--532. 2002.


C.E. Goodyer, J. Wood, M. Berzins. “A Parallel Grid Based PSE for EHL Problems,” In Applied Parallel Computing. Advanced Scientific Computing: 6th International Conference, PARA 2002, Proceedings, Espoo, Finland, Vol. 2367, Edited by J. Fagerholm and J. Haatja and J. Jarvinen and M. Lyly and P. Raback and V. Savolainen, Springer Lecture Notes in Computer Science, pp. 521--530. 2002.


J. Gregor, R.T. Whitaker. “Indoor Scene Reconstruction for Sets of Noisy Range Images,” In Graphical Models, Vol. 63, No. 5, pp. 304--332. September, 2002.


J. Gregor, S.S. Gleason, M.J. Paulus, J. Cates. “Fast Feldkamp Reconstruction Based on Focus of Attention and Distributed Computing,” In Int. J. Img. Sys. & Tech., Vol. 12, No. 6, pp. 229--234. 2002.


B. Gregoski, M. Duchaineau, P. Lindstrom, V. Pascucci, K. Joy. “Interactive View-Dependent Rendering of Large Isosurfaces,” In Proceedings of IEEE Conference on Visualization (VIS-02), Boston, MA, Note: UCRL-JC-146819, pp. 475--482. October, 2002.


K.A. Hansen, J.A. Weiss, J.K. Barton. “Recruitment of Tendon Crimp with Applied Tensile Strain,” In Journal of Biomechanical Engineering, Vol. 124, pp. 72--77. 2002.


P.K. Jimack, R. Mahmood, M.A. Walkley, M. Berzins. “A Multilevel Approach for Obtaining Locally Optimal Finite Element Meshes,” In Adv. Eng. Soft., Vol. 33, pp. 403--415. 2002.


C.R. Johnson, S.G. Parker, D. Weinstein, S. Heffernan. “Component-Based Problem Solving Environments for Large-Scale Scientific Computing,” In J. Conc. & Comp.: Prac. & Exper., Vol. 14, pp. 1337--1349. 2002.


S. Joshi, S. Pizer, P.T. Fletcher, P. Yushkevich, A. Thall, J. Marron. “Multiscale Deformable Model Segmentation and Statistical Shape Analysis Using Medial Descriptions,” In IEEE Trans Med Imaging, Vol. 21, No. 5, pp. 538--550. May, 2002.


E.G. Kholmovski, A.A. Samsonov, D.L. Parker. “POCSENSE: POCS-based method for reconstruction from sensitivity-encoded data,” In Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Honolulu, pp. 194. 2002.


E.G. Kholmovski, A.A. Samsonov, D.L. Parker. “Motion Artifact Reduction Technique for Dual Contrast FSE Imaging,” In Magnetic Resonance Imaging, Vol. 20, No. 6, pp. 455--462. 2002.


R.M. Kirby, G.E. Karniadakis. “Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES),” In J. Fluids Eng., Vol. 124, No. 4, pp. 886-891. 2002.


R.M. Kirby, G.E. Karniadakis. “Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES),” In Journal of Fluids Engineering, Vol. 124, No. 4, pp. 886--891. 2002.