Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

These are archived datasets that are not actively maintained beyond 2018

For more up to date resources, visit the SCI Head Models or the EDGAR Repository.

Aneurysm

Magnetic resonance angiogram of the vasculature of a patient's head
Download

Brain DMW

MRI scan of a head
Download

Brain DT

Twelve diffusion weighted volumes and one non-diffusion-weighted (B=0) reference volume.
Download

Brain EG

Comprehensive dataset of a head. This dataset contains a segmented tetrahedral finite element mesh, high- and low-resolution surface models of the scalp and cortex, a point-cloud of electrodes, and a dipole location for a forward simulation.
Download

Capecchi Mouse Paw

Mouse paw dataset used to test the Capecchi use case scenario in Seg3D
Download

Convert Examples

Examples that demonstrate how to use the SCIRun converters.
Download

Cylinder (3-shell)

This is a 3-shell cylinder model. Each shell has a distinct conductivity index.
Download

Heart DT

Diffusion weighted images of the heart.
Download

map3d

Various datasets for map3d.
Download

Matlab Examples

Matlab data contains geometry and potentials for a dog heart. The type of time series data is epicardial potentials. The mesh represents the geometry of 490 sock electrodes.
Download

MicroCT Collection

Collection of 51 small animal microCT scans.
Download

Seg3D Data

Heart and brain data for use with Seg3D
Download

Utah Torso

High resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. There are ten different conductivity values throughout the volume. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
Download

Utah Torso (low res)

Low resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
Download

Utah Torso (text based)

High resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. There are ten different conductivity values throughout the volume. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
Download