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2014


SCI Institute. Note: BioFEM: A SCIRun PowerApp that computes the electric field in a volume produced by a set of dipoles. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioImage: A SCIRun Power App for processing and visualizing medical image volumes. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioPSE: Problem Solving Environment for modeling, simulation, image processing, and visualization for biomedical computing applications. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioTensor: A SCIRun PowerApp for processing and visualizing diffusion tensor images. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




J. Bronson, J.A. Levine, R.T. Whitaker. “Lattice cleaving: a multimaterial tetrahedral meshing algorithm with guarantees,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), pp. 223--237. 2014.
DOI: 10.1109/TVCG.2013.115
PubMed ID: 24356365




CIBC. Note: Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software.html, 2014.




CIBC. Note: Cleaver: A MultiMaterial Tetrahedral Meshing Library and Application. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software.html, 2014.




L.T. Edgar, C.J. Underwood, J.E. Guilkey, J.B. Hoying, J.A. Weiss. “Extracellular matrix density regulates the rate of neovessel growth and branching in sprouting angiogenesis,” In PLOS one, Vol. 9, No. 1, 2014.
DOI: 10.1371/journal.pone.0085178




S. Elhabian, Y. Gur, C. Vachet, J. Piven, M. Styner, I. Leppert, G.B. Pike, G. Gerig. “A Preliminary Study on the Effect of Motion Correction On HARDI Reconstruction,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), pp. (accepted). 2014.




S. Elhabian, Y. Gur, J. Piven, M. Styner, I. Leppert, G.B. Pike, G. Gerig. “Subject-Motion Correction in HARDI Acquisitions: Choices and Consequences,” In Proceeding of the 2014 Joint Annual Meeting ISMRM-ESMRMB, pp. (accepted). 2014.




B. Erem P.M. van Dam, D.H. Brooks. “Identifying model inaccuracies and solution uncertainties in noninvasive activation-based imaging of cardiac excitation using convex relaxation,” In IEEE Trans Med Imaging, Vol. 33, No. 4, pp. 902--912. 2014.
DOI: 10.1109/TMI.2014.2297952
PubMed ID: 24710159
PubMed Central ID: PMC3982205




B. Erem, J. Coll-Font, R.M. Orellana, P. Stovicek, D.H. Brooks. “Using transmural regularization and dynamic modeling for noninvasive cardiac potential imaging of endocardial pacing with imprecise thoracic geometry,” In IEEE Trans Med Imaging, Vol. 33, No. 3, pp. 726--738. 2014.
DOI: 10.1109/TMI.2013.2295220
PubMed ID: 24595345
PubMed Central ID: PMC3950945




J. Fishbaugh, M. Prastawa, G. Gerig, S. Durrleman. “Geodesic Regression of Image and Shape Data for Improved Modeling of 4D Trajectories,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), pp. (accepted). 2014.




SCI Institute. Note: FluoRender: An interactive rendering tool for confocal microscopy data visualization. Scientific Computing and Imaging Institute (SCI) Download from: http://www.fluorender.org, 2014.




Note: FusionView: Problem Solving Environment for MHD Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




Y. Gao, M. Prastawa, M. Styner, J. Piven, G. Gerig. “A Joint Framework for 4D Segmentation and Estimation of Smooth Temporal Appearance Changes,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), pp. (accepted). 2014.




Y. Gur, C.R. Johnson. “Generalized HARDI Invariants by Method of Tensor Contraction,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), pp. (accepted). 2014.




X. Hao, K. Zygmunt, R.T. Whitaker, P.T. Fletcher. “Improved Segmentation of White Matter Tracts with Adaptive Riemannian Metrics,” In Medical Image Analysis, Vol. 18, No. 1, pp. 161--175. Jan, 2014.
DOI: 10.1016/j.media.2013.10.007
PubMed ID: 24211814




T. Hollt, A. Magdy, P. Zhan, G. Chen, G. Gopalakrishnan, I. Hoteit, C.D. Hansen, M. Hadwiger. “Ovis: A Framework for Visual Analysis of Ocean Forecast Ensembles,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. PP, No. 99, pp. 1. 2014.
DOI: 10.1109/TVCG.2014.2307892




CIBC. Note: ImageVis3D: An interactive visualization software system for large-scale volume data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.imagevis3d.org, 2014.



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