2009

J.R. Anderson, B.W. Jones, J.-H. Yang, M.V. Shaw, C.B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R.E. Marc. “A Computational Framework for Ultrastructural Mapping of Neural Circuitry,” In PLoS Biology, Vol. 7, No. 3, pp. e74. 2009.

J. Anderson, B. Jones, J. Yang, M. Shaw, C. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc. “Ultra Structural Mapping of Neural Circuitry: A Computational Framework,” In IEEE International Symposium on Biomedical Engineering (ISBI 2009), pp. (accepted). 2009.

T.J. Badger, R.S. Oakes, M. Daccarett, N.S. Burgon, N. Akoum, E.N. Fish, J.J. Blauer, S.N. Rao, Y. Adjei-Poku, E.G. Kholmovski, S. Vijayakumar, E.V. Di Bella, R.S. MacLeod, N.F. Marrouche. “Temporal Left Atrial Lesion Formation After Ablation of Atrial Fibrillation,” In Heart Rhythm, Vol. 6, No. 2, pp. 161--168. February, 2009.

M. Berzins. “Data Bounded Polynomials and Preserving Positivity in High Order ENO and WENO Methods,” SCI Technical Report, No. UUSCI-2009-003, SCI Institute, University of Utah, 2009.

E.W. Bethel, C.R. Johnson, S. Ahern, J. Bell, P.-T. Bremer, H. Childs, E. Cormier-Michel, M. Day, E. Deines, P.T. Fogal, C. Garth, C.G.R. Geddes, H. Hagen, B. Hamann, C.D. Hansen, J. Jacobsen, K.I. Joy, J. Kruger, J. Meredith, P. Messmer, G. Ostrouchov, V. Pascucci, K. Potter, Prabhat, D. Pugmire, O. Rubel, A.R. Sanderson, C.T. Silva, D. Ushizima, G.H. Weber, B. Whitlock, K. Wu. “Occam's Razor and Petascale Visual Data Analysis,” In Proceedings of SciDAC 2009, Journal of Physics: Conference Series, Vol. 180, No. 012084, pp. (published online). 2009.

SCI Institute. Note: BioFEM: A SCIRun PowerApp that computes the electric field in a volume produced by a set of dipoles. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2009.

CIBC. Note: BioImage: A SCIRun Power App for processing and visualizing medical image volumes. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2009.

CIBC. Note: BioPSE: Problem Solving Environment for modeling, simulation, image processing, and visualization for biomedical computing applications. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2009.

CIBC. Note: BioTensor: A SCIRun Power App for processing and visualizing diffusion tensor images. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2009.

M. Callahan, M.J. Cole, J.F. Shepherd, J.G. Stinstra, C.R. Johnson. “A Meshing Pipeline for Biomedical Models,” In Engineering with Computers, Vol. 25, No. 1, Note: DOI:10.1007/s00366-008-0106-1, SpringerLink, pp. 115-130. 2009.

A.N.M. Imroz Choudhury, S.G. Parker. “Ray Tracing NPR-Style Feature Lines,” In Proceedings of the 7th International Symposium on Non-Photorealistic Animation and Rendering (NPAR) 2009, pp. (accepted). 2009.

CIBC. Note: Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software.html, 2009.

M. Datar, J. Cates, P.T. Fletcher, S. Gouttard, G. Gerig, R.T. Whitaker. “Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging,” In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI ’09), pp. (to appear). 2009.

C. Deitrich, C.E. Scheidegger, J. Schreiner, J. Comba, L.P. Nedel, C.T. Silva. “Edge Transformations for Improving Mesh Quality of Marching Cubes,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 15, No. 1, pp. 150--159. Sept/Oct, 2009.

T. Ellkvist, L. Stromback, L. Lins, J. Freire. “A First Study on Strategies for Generating Workflow Snippets,” In Proceedings of the ACM SIGMOD Intenational Workshop on Keyword Search on Structured Data (KEYS), pp. (to appear). 2009.

T. Ellkvist, D. Koop, J. Freire, C.T. Silva, L. Stromback. “Using Mediation to Achieve Provenance Interoperability,” In Proceedings of the IEEE International Workshop on Scientific Workflows, 2009, pp. (to appear). 2009.

T. Etiene, C.E. Scheidegger, L.G. Nonato, R. Kirby, C.T. Silva. “Verifiable Visualization for Isosurface Extraction,” In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2009 IEEE Visualization Conference, pp. (accepted). Sept/Oct, 2009.

J. Freire. “Provenance Management: Challenges and Opportunities,” In Datenbanksysteme in Business, Technologie und Web (BTW), pp. 4. 2009.

Note: FusionView: Problem Solving Environment for MHD Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2009.

S. Gerber, T. Tasdizen, S. Joshi, R.T. Whitaker. “On the Manifold Structure of the Space of Brain Images,” In Proceedings of the 2009 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), pp. (to appear). 2009.