Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


 A.A. Samsonov, E.G. Kholmovski, C.R. Johnson. “Phase-Constrained Reconstruction of Sensitivity-Encoded MRI Data with POCSENSE,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 2647. 2004.


A.A. Samsonov, C.R. Johnson. “Noise-Adaptive Nonlinear Diffusion Filtering of MR Images with Spatially Varying Noise Levels,” In Magn. Reson. Med., Vol. 52, pp. 798--806. 2004.


A.A. Samsonov, E.G. Kholmovski, D.L. Parker, C.R. Johnson. “POCSENSE: POCS-based reconstruction for sensitivity encoded MRI,” In Magn. Reson. Med., Vol. 52, pp. 1397--1406. 2004.


A.A. Samsonov, C.R. Johnson. “Multicoil MRI Artifacts Correction Using Parallel Pocs,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), 2004.


A.R. Sanderson, C.R. Johnson, R.M. Kirby. “Display of Vector Fields Using a Reaction Diffusion Model,” In Proceeding of IEEE Visualization 2004, pp. 115--122. 2004.


U. Schmitt, C.H. Wolters, A. Anwander, T. Knoesche. “STR: A New Spatio-Temporal Approach for Accurate and Efficient Current Density Reconstruction,” In Proceedings of The 14th International Conference on Biomagnetism, pp. 591--592. 2004.


H.-W. Shen, G.-S. Li, U. Bordoloi. “Interactive Visualization of Three-Dimensional Vector Fields with Flexible Appearance Control,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 10, No. 4, pp. 434--445. 2004.


J. Simpson, S.J. Balling. “ANNOT3D and Packaging of 3D Visualizations for Educational Purposes,” In Proceedings of The 12th Annual Medicine Meets Virtual Reality Conference, Newport Beach, CA, pp. (in press). January, 2004.


K.J. Stabile, J. Pfaeffle, J.A. Weiss, K. Fisher, M.M. Tomaino. “Bi-directional Mechanical Properties of the Human Forearm Interosseous Ligament,” In J. Orthoped. Res., Vol. 22, No. 3, pp. 607--612. 2004.


F. Stenger, T. Cook, R.M. Kirby. “Sinc Solution of Biharmonic Problems,” In Canadian Applied Mathematics Quarterly, Vol. 12, No. 3, pp. 391--413. 2004.


T. Tasdizen, D.M. Weinstein, J.N. Lee. “Automatic Tissue Classification for the Human Head from Multispectral MRI,” SCI Institute Technical Report, No. UUSCI-2004-001, University of Utah, March, 2004.


T. Tasdizen, R.T. Whitaker. “Higher-order nonlinear priors for surface reconstruction,” In IEEE Trans. Pattern Anal. & Mach. Intel., Vol. 26, No. 7, pp. 878--891. July, 2004.


T. Tasdizen, R.T. Whitaker. “An Efficient, Geometric Multigrid Solver for the Anisotropic Diffusion Equation in Two and Three Dimensions,” SCI Institute Technical Report, No. UUSCI-2004-002, University of Utah, June, 2004.


X. Tricoche, C. Garth, G. Kindlmann, E. Deines, G. Scheuermann, Markus Ruetten, Charles D. Hansen. “Visualization of Intricate Flow Structures for Vortex Breakdown Analysis,” In Proceeding of IEEE Visualization 2004, pp. 187--194. 2004.


X. Tricoche, C. Garth, T. Bobach, G. Scheuermann, M. Ruetten. “Accurate and Efficient Visualization of Flow Structures in a Delta Wing Simulation.,” In 34th AIAA Fluid Dynamics Conference and Exhibit, Portland, OR., American Institute of Aeronautics and Astronautics AIAA, June, 2004.


D. Uesu, L. Bavoil, S. Fleishman, C.T. Silva. “Simplification of Unstructured Tetrahedral Meshes by Point-Sampling,” SCI Institute Technical Report, No. UUSCI-2004-005, University of Utah, 2004.


R. Van Uitert, C.R. Johnson, L. Zhukov. “Influence of Head Tissue Conductivity in Forward and Inverse Magnetoencephalographic Simulations Using Realistic Head Models,” In IEEE Trans Biomed. Eng., Vol. 51, No. 12, pp. 2129--2137. 2004.


M.J. van Kreveld, R. van Oostrum, C.L. Bajaj, V. Pascucci, D.R. Schikore. “Efficient contour tree and minimum seed set construction,” In Surface Topological Data Structures: An Introduction for Geographical Information Science, Note: UCRL-BOOK-200018, Edited by Sanjay Rana and Jo Wood, John Wiley & Sons, pp. 71--86. May, 2004.


A.I. Veress, N. Phatak, J.A. Weiss. “Deformable Image Registration with Hyperelastic Warping,” In Topics in Biomedical Engineering International Book Series, Edited by J.S. Suri and D.L Wilson and S. Laxminarayan, Springer, pp. 487--533. 2004.
DOI: 10.1007/0-306-48608-3_12


A.I. Veress, W.P. Segars, B.M.W. Tsui, J.A. Weiss, G.T. Gullberg. “Physiologically Realistic LV Models to Produce Normal and Pathological Image and Phantom Data,” In Proceedings of the IEEE Medical Imaging Conference, Rome, October, 2004.