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2014


SCI Institute. Note: BioFEM: A SCIRun PowerApp that computes the electric field in a volume produced by a set of dipoles. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioImage: A SCIRun Power App for processing and visualizing medical image volumes. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioPSE: Problem Solving Environment for modeling, simulation, image processing, and visualization for biomedical computing applications. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: BioTensor: A SCIRun PowerApp for processing and visualizing diffusion tensor images. Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




J. Bronson, J.A. Levine, R.T. Whitaker. “Lattice cleaving: a multimaterial tetrahedral meshing algorithm with guarantees,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), pp. 223--237. 2014.
DOI: 10.1109/TVCG.2013.115
PubMed ID: 24356365




CIBC. Note: Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software.html, 2014.




B. Erem P.M. van Dam, D.H. Brooks. “Identifying model inaccuracies and solution uncertainties in noninvasive activation-based imaging of cardiac excitation using convex relaxation,” In IEEE Trans Med Imaging, Vol. 33, No. 4, pp. 902--912. 2014.
DOI: 10.1109/TMI.2014.2297952
PubMed ID: 24710159
PubMed Central ID: PMC3982205




B. Erem, J. Coll-Font, R.M. Orellana, P. Stovicek, D.H. Brooks. “Using transmural regularization and dynamic modeling for noninvasive cardiac potential imaging of endocardial pacing with imprecise thoracic geometry,” In IEEE Trans Med Imaging, Vol. 33, No. 3, pp. 726--738. 2014.
DOI: 10.1109/TMI.2013.2295220
PubMed ID: 24595345
PubMed Central ID: PMC3950945




Y. Gur, C.R. Johnson. “Generalized HARDI Invariants by Method of Tensor Contraction,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), pp. (accepted). 2014.




CIBC. Note: ImageVis3D: An interactive visualization software system for large-scale volume data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.imagevis3d.org, 2014.




CIBC. Note: map3d: Interactive scientific visualization tool for bioengineering data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software.html, 2014.




C. McGann, N. Akoum, A. Patel, E. Kholmovski, P. Revelo, K. Damal, B. Wilson, J. Cates, A. Harrison, R. Ranjan, N.S. Burgon, T. Greene, D. Kim, E.V. Dibella, D. Parker, R.S. MacLeod, N.F. Marrouche. “Atrial fibrillation ablation outcome is predicted by left atrial remodeling on MRI,” In Circ Arrhythm Electrophysiol, Vol. 7, No. 1, pp. 23--30. 2014.
DOI: 10.1161/CIRCEP.113.000689
PubMed ID: 24363354




M. Milanič, V. Jazbinšek, R.S. MacLeod, D.H. Brooks, R. Hren. “Assessment of regularization techniques for electrocardiographic imaging,” In Journal of electrocardiology, Vol. 47, No. 1, pp. 20--28. 2014.
DOI: 10.1016/j.jelectrocard.2013.10.004




B.R. Parmar, T.R. Jarrett, N.S. Burgon, E.G. Kholmovski, N.W. Akoum, N. Hu, R.S. Macleod, N.F. Marrouche, R. Ranjan. “Comparison of Left Atrial Area Marked Ablated in Electroanatomical Maps with Scar in MRI,” In Journal of Cardiovascular Electrophysiology, 2014.
DOI: 10.1111/jce.12357




SCI Institute. Note: SCIRun: A Scientific Computing Problem Solving Environment, Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org, 2014.




CIBC. Note: Seg3D: Volumetric Image Segmentation and Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.seg3d.org, 2014.



2013


B. Burton, B. Erem, K. Potter, P. Rosen, C.R. Johnson, D. Brooks, R.S. Macleod. “Uncertainty Visualization in Forward and Inverse Cardiac Models,” In Computing in Cardiology CinC, pp. 57--60. 2013.
ISSN: 2325-8861




C. Butson, G. Tamm, S. Jain, T. Fogal, Jens Krueger. “Evaluation of Interactive Visualization on Mobile Computing Platforms for Selection of Deep Brain Stimulation Parameters,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 1, January, 2013.




A. Daducci, E.J. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y.-C Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P.R. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, J.-P. Thiran. “Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI,” In IEEE Transactions on Medical Imaging, Vol. 33, No. 2, pp. 384--399. 2013.
ISSN: 0278-0062
DOI: 10.1109/TMI.2013.2285500




M. Datar, I. Lyu, S. Kim, J. Cates, M.A. Styner, R.T. Whitaker. “Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes,” In Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011), Vol. 16(Pt. 2), pp. 19--26. 2013.
PubMed ID: 24579119



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