2009

E. Jurrus, M. Hardy, T. Tasdizen, P.T. Fletcher, P. Koshevoy, C.-B. Chien, W. Denk, R.T. Whitaker. “Axon Tracking in Serial Block-Face Scanning Electron Microscopy,” In Medical Image Analysis (MEDIA), Vol. 13, No. 1, Elsevier, pp. 180--188. February, 2009.

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J.R. Anderson, B.W. Jones, J.-H. Yang, M.V. Shaw, C.B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R.E. Marc. “A Computational Framework for Ultrastructural Mapping of Neural Circuitry,” In PLoS Biology, Vol. 7, No. 3, pp. e74. 2009.

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Kannan U.V., A.R.C. Paiva, E. Jurrus, T. Tasdizen. “Automatic Markup of Neural Cell Membranes Using Boosted Decision Stumps,” In Proceedings of the IEEE International Symposium on Biomedical Engineering (ISBI 2009), Boston, MA, pp. (accepted). 2009.

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J. Anderson, B. Jones, J. Yang, M. Shaw, C. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc. “Ultra Structural Mapping of Neural Circuitry: A Computational Framework,” In IEEE International Symposium on Biomedical Engineering (ISBI 2009), pp. (accepted). 2009.

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E. Jurrus, A.R.C. Paiva, S. Watanabe, R.T. Whitaker, E.M. Jorgensen, T. Tasdizen. “Serial Neural Network Classifier for Membrane Detection using a Filter Bank.,” SCI Technical Report, No. UUSCI-2009-006, SCI Institute, University of Utah, 2009.

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S. Gerber, T. Tasdizen, S. Joshi, R.T. Whitaker. “On the Manifold Structure of the Space of Brain Images,” In Proceedings of the 2009 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), pp. (to appear). 2009.

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S. Gerber, T. Tasdizen, R.T. Whitaker. “Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds,” In Proceedings of the 2009 International Conference on Computer Vison (ICCV 2009), pp. (to appear). 2009.

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2008

E. Jurrus, R.T. Whitaker, B. Jones, R. Marc, T. Tasdizen. “An Optimal-Path Approach for Neural Circuit Reconstruction,” In Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1609--1612. 2008.

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N.L. Foster, A.Y. Wang, T. Tasdizen, P.T. Fletcher, J.M. Hoffman, R.A. Koeppe. “Realizing the Potential of Positron Emission Tomography with F-Fluorodeoxyglucose to Improve the Treatment of Alzheimer,” In Journal of the Alzheimer, Vol. 4, No. 1, Suppl. 1, pp. 29--36. 2008.

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N. Sadeghi, N.L. Foster, A.Y. Wang, S. Minoshima, A.P. Lieberman, T. Tasdizen. “Automatic Classification of Alzheimer,” In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI 2008): From Nano to Macro, pp. 408--411. 2008.

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T. Tasdizen. “Principal Components for Non-Local Means of Image Denoising,” In Proceedings of the International Conference on Image Processing (ICIP 2008), pp. (accepted). 2008.

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2007

S. Gerber, T. Tasdizen, R.T. Whitaker. “Robust Non-linear Dimensionality Reduction using Successive 1-Dimensional Laplacian Eigenmaps,” In Proceedings of the 2007 International Conference on Machine Learning (ICML), pp. 281--288. 2007.

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O. Nemitz, T. Tasdizen, M. Rumpf, R.T. Whitaker. “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” In Journal of Mathematical Imaging and Vision, Vol. 7, No. 3, pp. 217--229. 2007.

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G. Adluru, S.P. Awate, T. Tasdizen, R.T. Whitaker, E.V.R. DiBella. “Temporally Constrained Reconstruction of Dynamic Cardiac Perfusion MRI,” In Magnetic Resonance in Medicine, Vol. 57, pp. 1027--1036. 2007.

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B.W. Jones, R.E. Marc, C.B. Watt, K. Kinardi, D. DeMill, J.H. Yang, T. Tasdizen, P. Koshevoy, E. Jurrus, R.T. Whitaker. “Structure and Function of Microneuromas in Retinal Remodeling,” In The Association for Research in Vision and Ophthalmology (ARVO) Conference, Note: (abstract), 2007.

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P.A. Koshevoy, T. Tasdizen, R.T. Whitaker. “Automatic Assembly of TEM Mosaics and Mosaic Stacks Using Phase Correlation,” SCI Institute Technical Report, No. UUSCI-2007-004, University of Utah, 2007.

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N. Sadeghi, T. Tasdizen, N.L. Foster, A.Y. Wang, S. Minoshima, A.P. Lieberman.. “Automatic Classification of Alzheimers Disease vs. Frontotemporal Dementia: A Decision Tree Approach with FDG-PET,” SCI Institute Technical Report, No. UUSCI-2007-016, University of Utah, 2007.

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2006

S.P. Awate, T. Tasdizen, R.T. Whitaker. “Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,” SCI Institute Technical Report, No. UUSCI-2006-011, University of Utah, 2006.

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O. Nemitz, M. Rumpf, T. Tasdizen, R.T. Whitaker. “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” In Journal of Mathematical Imaging and Vision, Vol. 27, No. 3, pp. 217--229. April, 2006.

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P. Koshevoy, T. Tasdizen, R.T. Whitaker, B. Jones, R. Marc. “Assembly of Large Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy,” In Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, October, 2006.

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