Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


 J. Cates, A. Lefohn, R.T. Whitaker. “GIST: an Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images,” No. UUCS-04-007, University of Utah School of Computing, 2004.


J. Cates, R.T. Whitaker, G.M. Jones. “Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation,” No. UUCS-04-006, University of Utah School of Computing, 2004.


J. Cates, A. Lefohn, R.T. Whitaker. “GIST: An Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images,” In Medical Image Analysis, Vol. 8, No. 3, pp. 217--231. September, 2004.

2003


 J. Cates, R.T. Whitaker. “Interactive Medical Image Segmentation Using the Insight Toolkit,” In Proceedings of The Radiological Society of North America Annual Meeting 2003, November, 2003.


L. Ibanez, W. Schroeder, L. Ng, J. Cates. “The ITK Software Guide,” Kitware, Inc., 2003.
ISBN: 1-930934-10-6


A.E. Lefohn, J. Cates, R.T. Whitaker. “Interactive, GPU-Based Level Sets for 3D Brain Tumor Segmentation,” Technical Report, No. UUCS-03-004, University of Utah School of Computing, 2003.


A.E. Lefohn, J. Cates, R.T. Whitaker. “Interactive, GPU-Based Level Sets for 3D Segmentation,” In Medical Image Computing and Computer Assisted Intervention (MICCAI), pp. 564--572. 2003.

2002


 J. Gregor, S.S. Gleason, M.J. Paulus, J. Cates. “Fast Feldkamp Reconstruction Based on Focus of Attention and Distributed Computing,” In Int. J. Img. Sys. & Tech., Vol. 12, No. 6, pp. 229--234. 2002.