Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


J. Nash, P. Dew, M. Berzins. “Using SADTs to Support Irregular Computational Problems,” In International Symposium on Parallel Architectures, Algorithms, and Networks, IEEE Computer Society, Los Alamitos, CA, USA pp. 338--344. 1999.
ISSN: 1087-4089
DOI: 10.1109/ISPAN.1999.778961

J. Nash, M. Berzins, P. Selwood. “A Structured SADT Approach to the Support of a Parallel Adaptive 3D CFD Code,” In Euro-Par'99 Parallel Processing, Springer Nature, pp. 651--658. 1999.
DOI: 10.1007/3-540-48311-x_91

E.M. Nurgat, M. Berzins, L.E. Scales. “Solving EHL Problems Using Iterative Multigrid and Homotopy Methods,” In ASME Journal of Tribology, Vol. 121, pp. 28--34. January, 1999.

S.G. Parker, M. Parker, Y. Livnat, P.P. Sloan, C.D. Hansen, P. Shirley. “Interactive Ray Tracing for Volume Visualization,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 5, No. 3, pp. 238--250. July-September, 1999.

S.G. Parker, P. Shirley, Y. Livnat, C.D. Hansen, P.-P. Sloan, M. Parker. “Interacting with Gigabyte Volume Datasets on the Origin 2000,” In The 41st Annual Cray User's Group Conference, 1999.

S.G. Parker, W. Martin, P.-P. Sloan, P. Shirley, B. Smits, C.D. Hansen. “Interactive Ray Tracing,” In Symposium on Interactive 3D Graphics: Interactive 3D, pp. 119--126. April 26-28, 1999.

M. Richards, N.A. Waanders, J.A. Weiss, V. Bhatia, L.E. Senunas, M.B. Schaffler, S.A. Goldstein, J.A. Goulet. “Reduced Gap Strains Induce Changes in Bone Regeneration During Distraction,” In Journal of Biomechanical Engineering, Vol. 121, pp. 348--355. 1999.

G. Scheuermann, X. Tricoche, H. Hagen. “C1-Interpolation for Vector Field Topology Visualization,” In Proceeding IEEE Visualization 1999, pp. 271--278. 1999.

P. Selwood, M. Berzins. “Portable Parallel Adaptation of Unstructured Tetrahedral Meshes,” In Concurrency, Vol. 11, No. 13, pp. 1--22. 1999.

P.P. Sloan, C.D. Hansen. “Parallel Lumigraph Reconstruction,” In Parallel Visualization and Graphics Symposium 1999, pp. 7--14. October, 1999.

P. Sutton, C.D. Hansen. “Isosurface Extraction in Time-varying Fields Using a Temporal Branch-on-Need Tree (T-BON),” In IEEE Visualization 1999, pp. 147--153. Oct, 1999.

T. Tasdizen, J.-P. Tarel, D. B. Cooper. “Algebraic curves that work better,” In Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 1999.
DOI: 10.1109/cvpr.1999.784605

A. Tomlin, S. Ghorai, G. Hart, M. Berzins. “3D adaptive unstructured meshes for air pollution modelling,” In Environmental Management and Health, Vol. 10, No. 4, pp. 267-275. 1999.
DOI: 10.1108/09566169910276238

T. Udeshi, C.D. Hansen. “Towards Interactive Photo-Realistic Rendering of Indoor Scenes: A Hybrid Approach,” In Proceedings of the Tenth Eurographics Workshop on Rendering, pp. 63--76. June, 1999.

T. Udeshi, C.D. Hansen. “Parallel Multipipe Rendering for Very Large Isosurface Visualization,” In Joint EUROGRAPHICS - IEEE TCCG Symposium on Visualization, 1999.

B. Walter, G. Drettakis, S.G. Parker. “Interactive Rendering Using the Render Cache,” In Rendering techniques '99 (Proceedings of the10thEurographics Workshop on Rendering), Vol. 10, Springer-Verlag/Wien, New York pp. 235--246. 1999.

M. Walkley, M. Berzins. “A finite element model for the one-dimensional extended Boussinesq equations,” In International Journal for Numerical Methods in Fluids, Vol. 29, pp. 143--157. 1999.

J.A. Weiss, L.E. Paulos. “Mechanical Testing of Ligament Fixation Devices,” In Techniques in Orthopaedics, Vol. 14, No. 1, pp. 14--21. 1999.

D.M. Weinstein, G. Kindlmann, E. Lundberg. “Tensorlines: Advection-Diffusion Based Propagation Through Diffusion Tensor Fields,” In IEEE Visualization, pp. 249--253. 1999.

D.M. Weinstein, L. Zhukov, C.R. Johnson. “Lead Field Basis for FEM Source Localization,” School of Computing Technical Report, No. UUCS-99-014, University of Utah, Salt Lake City, UT October, 1999.