Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.
Paper presentations are 20' (15' talks with 5' for discussion)
8:45-9:10 Workshop opening Organizers
Session 1: 4D Image Processing
9:10-9:30 Using the fourth dimension to distinguish between structures for anisotropic diffusion filtering in 4D CT perfusion scans Adrinne M. Mendrik, Evert-jan Vonken, Theo Witkamp, Mathias Prokop, Bram van Ginneken, and Max. A. Viergever, University Medical Center Utrecht, Utrecht
9:30-10:00 pdf iconppt iconTutorial I: Appearance Changes in Image Registration Marc Niethammer, UNC Chapel Hill
10:00-10:30 Coffee Break  
Session 2: Longitudinal Modeling
10:30-10:50 Construction of a 4D Brain Atlas and Growth Model using Diffeomorphic Registration Andreas Schuh1, Maria Murgasova, Antonios Makropoulos, Christian Ledig, Serena J Counsell, Jo V Hajnal, Paul Aljabar, and Daniel Rueckert, Imperial and Kings College, London
10:50-11:10 Is it possible to differentiate the impact of pediatric monophasic demyelinating disorders and multiple sclerosis after a first episode of demyelination? Bérengère Aubert-Broche1, Vladimir Fonov, Katrin Weier, Sridar Narayanan, Douglas L Arnold, Brenda Banwell, and D Louis Collins
11:10-11:40 Joint longitudinal modeling of brain appearance in multimodal MRI for the characterization of early brain developmental processes Avantika Vardhan, Neda Sadeghi, Clement Vachet, Joseph Piven, Guido Gerig, University of Utah
11:40-12:00 pdf iconTutorial II: Hierarchical Geodesic Models of Longitudinal Shape Tom Fletcher, SCI Institute, University of Utah
12:00-13:00 Lunch Break  
Session 3: Longitudinal Registration and Shape Modeling
13:00-13:50 Plenary Talk: Yicong Wu, NIMH
Toward the construction of a 4D dynamic brain atlas in the C.elegans embryo
13:50-14:10 Prefrontal cortical folding of the preterm brain: a longitudinal analysis of preterm-born neonates Eliza Orasanu, Andrew Melbourne, Herve Lombaert, Manuel Jorge Cardoso, Stian Flage Johnsen, Giles S. Kendall, Nicola J. Robertson, Neil Marlow, and Sebastien Ourselin, UCL London
14:10-14:30 A locally linear method for enforcing temporal smoothness in serial image registration Ernst Schwartz,Andras Jakab,Georg Langs, University of Vienna
14:30-15:00 pdf iconTutorial III: Statistics of Longitudinal Shape Data Stanley Durrleman, ICM & INRIA, Paris
15:00-15:30 Coffee Break  
Session 4: Reconstruction from Longitudinal Data
15:30-15:50 Longitudinal Guided Super-Resolution Reconstruction of Neonatal Brain MRI Images  Feng Shi, Jian cheng, Li Wang, Pew-Thian Yap, Dinggang Shen, BRIC, UNC Chapel Hill
15.50-16.20 pdf iconTutorial IV: The SVF Framework for Longitudinal Statistics on Deformations  Xavier Pennec, INRIA Sophia Antipolis
Session 5: Discussion
16:20-17:00 Panel Discussion Guido Gerig, SCI Institute, University of Utah, organizers and all participants