Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


 F. Stenger, T. Cook, R.M. Kirby. “Sinc Solution of Biharmonic Problems,” In Canadian Applied Mathematics Quarterly, Vol. 12, No. 3, pp. 391--413. 2004.


Z. Yosibash, R.M. Kirby, D. Gottlieb. “Collocation Methods for the Solution of Von-Karman Dynamic Non-Linear Plate Systems,” In Journal of Computational Physics, Vol. 200, No. 2, pp. 432--461. 2004.

2003


 R.M. Kirby, G.E. Karniadakis. “De-Aliasing on Non-Uniform Grids: Algorithms and Applications,” In J. Comp. Phys., Vol. 191, No. 1, pp. 267--282. October, 2003.


G.E. Karniadakis, R.M. Kirby. “Parallel Scientific Computing in C++ and MPI: A Seamless Approach to Parallel Algorithms and their Implementation,” Cambridge University Press, pp. 628 pages. June, 2003.
ISBN: 0521520800


R.M. Kirby, G.E. Karniadakis. “De-Aliasing on Non-Uniform Grids: Algorithms and Applications,” In Journal of Computational Physics, Vol. 191, pp. 249--264. 2003.

2002


 R.M. Kirby, G.E. Karniadakis. “Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES),” In J. Fluids Eng., Vol. 124, No. 4, pp. 886-891. 2002.


R.M. Kirby, G.E. Karniadakis. “Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES),” In Journal of Fluids Engineering, Vol. 124, No. 4, pp. 886--891. 2002.

2001


 R.M. Kirby, G.E. Karniadakis, O. Mikulchenko, K. Mayaram. “Integrated Simulation for MEMS: Coupling Flow-Structure-Thermal-Electrical Domains,” In The MEMS Handbook, Edited by M. Gad-el-Hak, Informa UK Limited, 2001.


R.M. Kirby, G.E. Karniadakis. “Under-Resolution and Diagnostics in Spectral Simulations of Complex-Geometry Flows,” In Turbulent Flow Computation, Edited by D. Drikakis and B. Geurts, Springer, pp. 1--42. 2001.


R.M. Kirby, G.E. Karniadakis, O. Mikulchenko, K. Mayaram. “An Integrated Simulator for Coupled Domain Problems in MEMS,” In Journal of Microelectromechanical Systems, Vol. 10, No. 3, pp. 379--399. 2001.


D.H. Laidlaw, R.M. Kirby, J.S. Davidson, T.S. Miller, M. da Silva, W.H. Warren, M. Tarr. “Quantitative Comparative Evaluation of 2D Vector Field Visualization Methods,” In Proceedings of IEEE Visualization 2001, San Diego, CA, pp. 143--150. October, 2001.

2000


 A. Forsberg, R.M. Kirby, D.H. Laidlaw, G.E. Karniadakis, A. van Dam, J. Elion. “Immersive Virtual Reality for Visualizing Flow Through an Artery,” In Proceedings of IEEE Visualization 2000, Salt Lake City, UT, pp. 457--460. October, 2000.

1999


 G.-S. Karamanos, C. Evangelinos, R.C. Boes, R.M. Kirby, G.E. Karniadakis. “Direct Numerical Simulation of Turbulence with a PC/Linux Cluster: Fact or Fiction?,” In Proceedings of SuperComputing 1999, Portland, OR, November, 1999.


R.M. Kirby, T.C. Warburton, I. Lomtev, G.E. Karniadakis. “A Discontinuous Galerkin Spectral/hp Method on Hybrid Grids,” In Journal of Applied Numerical Mathematics, Vol. 33, pp. 393--405. 1999.


R.M. Kirby, H. Marmanis, D.H. Laidlaw. “Visualizing Multivalued Data from 2D Incompressible Flows Using Concepts from Painting,” In Proceedings of IEEE Visualization 1999, San Francisco, CA, pp. 333--340. October, 1999.


I. Lomtev, R.M. Kirby, G.E. Karniadakis. “A Discontinuous Galerkin ALE Method for Compressible Viscous Flows in Moving Domains,” In Journal of Computational Physics, Vol. 155, pp. 128--159. 1999.