Center for Integrative Biomedical Computing

SCI Publications


A. Ghodrati, D.H Brooks, G. Tadmor, R.S. MacLeod. “A Threshold-Based Method for Inverse Solutions to Reconstruct Complex Obstacles, with Application to the Inverse Problem of Electrocardiography,” In SIAM Conference on Imaging Science, Minneapolis, MN, USA May, 2006.

C.R. Johnson, D.M. Weinstein. “Biomedical Computing and Visualization,” In Proceedings of the Twenty-Ninth Australasian Computer Science Conference (ACSC2006): Conferences in Research and Practice in Information Technology (CRPIT), Hobart, Australia, Vol. 48, Edited by Vladimir Estivill-Castro and Gill Dobbie, pp. 3-10. 2006.

J.T. Johnson III, M.S. Hansen, I. Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C. Keller. “Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping,” In PLoS Genetics, Vol. 2, No. 1, pp. 471--477. April, 2006.

C.R. Johnson. “Computational Methods and Software for Bioelectric Field Problems,” In Biomedical Engineering Handbook, 2nd Edition, Vol. 1, Ch. 23, Edited by J.D. Bronzino, CRC Press, Boca Raton, pp. 1--23. 2006.

J.T. Johnson III, M.S. Hansen, I.Q Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C.Keller. “Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping,” In Proceedings of the Teratology 46th Annual Meeting, Tucson, AZ, 2006.

M. Jolley, J. Triedman, C.-F. Westin, D.M. Weinstein, R.S. MacLeod, D.H. Brooks. “Image Based Modeling of Defibrillation in Children,” In Proceedings of the 26th Annual International Conference of the IEEE EMBS, New York, NY, USA August, 2006.

E. Jurrus, T. Tasdizen, P. Koshevoy, P.T. Fletcher, M. Hardy, C-B. Chien, W. Denk, R.T. Whitaker. “Axon Tracking in Serial Block-Face Scanning Electron Microscopy,” In Workshop on Microscopic Image Analysis with Applications in Biology, MICCAI, October, 2006.

G. Kindlmann, X. Tricoche, C.-F. Westin. “Anisotropy Creases Delineate White Matter Structure in Diffusion Tensor MRI,” In Proceedings of the Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Copenhagen, Denmark, Springer Lecture Notes in Computer Science 4190, pp. 126--133. October, 2006.

G. Kumfert, D.E. Bernholdt, T.G.W. Epperly, J.A. Kohl, L.C. McInnes, S.G. Parker, J. Ray. “How the Common Component Architecture Advances Computational Science,” In J. Phys.: Conf. Ser., Vol. 46, pp. 479--493. 2006.

G. Li, X. Tricoche, C.D. Hansen. “GPUFLIC: Interactive and Accurate Dense Visualization of Unsteady Flows,” In Proceedings of Euro Vis 2006, pp. 29--34. 2006.

L. Lorenzo, R.S. MacLeod, R.T. Whitaker, G. Adluru, E.V.R. DiBella. “Level Sets and Shape Models for Segmentation of Cardiac Perfusion MRI,” In Proceedings of International Society for Optical Engineering (SPIE) Conference on Medical Imaging 2006, Vol. 6144, pp. 1320--1331. 2006.

C.R. Johnson, R. Moorhead, T. Munzner, H. Pfister, P. Rheingans, T. Yoo. “NIH/NSF Visualization Research Challenges Report Summary,” Note: NIH/NSF, pp. 66-73. 2006.

S. Nagarajan, O. Portniaguine, D. Hwang, C.R. Johnson, K. Sekihara. “Controlled Support MEG Imaging,” In NeuroImage, Vol. 15;33, No. 3, pp. 878--885. 2006.

S.G. Parker, K. Zhang, K. Damevski, C.R. Johnson. “Integrating Component-Based Scientific Computing Software,” In Parallel Processing for Scientific Computing, Edited by M.A. Heroux and P. Raghavan and H.D. Simon, SIAM Press, pp. 271--288. 2006.
ISBN: 0-89871-619-5

Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources,” In IEEE Trans Biomed. Eng., Vol. 53, No. 10, pp. 2024--2034. October, 2006.

J.F. Shepherd. “Hexahedral Mesh Generation Constraints,” SCI Institute Technical Report, No. UUSCI-2006-010, University of Utah, 2006.

J.G. Stinstra, S.F. Roberts, J.B. Pormann, R.S. MacLeod, C.S. Henriquez. “A Model of 3D Propagation in Discrete Cardiac Tissue,” In Proceedings of Computers in Cardiology 2006, Vol. 33, pp. 41. 2006.

X. Tricoche, X. Zheng, A. Pang. “Visualizing the Topology of Symmetric, Second-Order, Time-varying Two-Dimensional Tensor Fields,” In Visualization and Processing of Tensor Fields, Springer, pp. 225--240. 2006.

C.H. Wolters, A. Anwander, X. Tricoche, D.M. Weinstein, M.A. Koch, R.S. MacLeod. “Influence of Tissue Conductivity Anisotropy on EEG/MEG Field and Return Current Computation in a Realistic Head Model: A Simulation and Visualization Study Using High-Resolution Finite Element Modeling,” In Neuroimage, Vol. 30, No. 3, pp. 813--826. April, 2006.

C.H. Wolters, A. Anwander, G. Berti, U. Hartmann. “Geometry-Adapted Hexahedral Meshes Improve Accuracy of Finite Element Method Based EEG Source Analysis,” In IEEE Transactions on Biomedical Engineering, Vol. 54, No. 8, pp. 1446--1453. August, 2006.