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seg3d  
Segmentation    Image Processing

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing. It combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit.


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Overview

Seg3D layout-1Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows.

Seg3D at a glance:

  • Fully 3D interface with multiple volumes managed as layers
  • Automatic segmentation integrated with manual contouring
  • Volume rendering with 2D transfer function manipulation in real-time
  • Image processing and segmentation from the Insight Toolkit (ITK)
  • Real time display of ITK filtering output allows for computational steering
  • 64-bit enabled for handling large volumes on large memory machines
  • Supports many common biomedical image formats
  • Open source with BSD-style license
  • Cross platform: Windows, OSX, and Linux



Acknowledgement: Seg3D is an Open Source software project that is principally funded through the SCI Institute's NIH/NIGMS CIBC Center. Please use the following acknowledgment and send us references to any publications, presentations, or successful funding applications that make use of NIH/NIGMS CIBC software or data sets.

 "This project was supported by grants from the National Center for Research Resources (5P41RR012553-15) and the National Institute of General Medical Sciences (8 P41 GM103545-15) from the National Institutes of Health."

Seg3D Citation: [bibtex citation] [Endnote citation]