Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2005


C. Guerra, V. Pascucci. “Line-Based Object Recognition Using Hausdorff Distance: From Range Images to Molecular Secondary Structure,” In Image and Vision Computing, Vol. 23, No. 4, Note: UCRL-JRNL-208551, pp. 405-415. April, 2005.



A. Gyulassy, V. Natarajan, V. Pascucci, P.-T. Bremer, B. Hamann. “Topology-based Simplification for Feature Extraction from 3D Scalar Fields,” In Proceedings of the IEEE Conference on Visualization (VIS-05), pp. 275--280. October, 2005.



V. Natarajan, V. Pascucci. “Volumetric Data Analysis Using Morse-Smale Complexes,” In Proceedings of the International Conference Shape Modeling and Applications, Edited by A.G. Belyaev and A.A. Pasko and M. Spagnuolo, IEEE Computer Society, pp. 320--325. June, 2005.



S.-E. Yoon, P. Lindstrom, V. Pascucci, D. Manocha. “Cache-Oblivious Mesh Layouts,” In ACM Transactions on Graphics: ACM SIGGRAPH 2005 Papers, Vol. 24, No. 3, pp. 886--893. August, 2005.



S.-E. Yoon, P. Lindstrom, V. Pascucci, D. Manocha. “Cache-Oblivious Layouts of Polygonal Meshes,” In Proceedings of Massive 2005 (workshop on Massive Geometric Data Sets), pp. 29--33. 2005.


2004


R. Borgo, V. Pascucci, R. Scopigno. “Massive Data Pre-Processing with a Cluster Based Approach,” In Proceedings of the 2004 Eurographics Symposium on Parallel Graphics and Visualization (EG-PGV-04), Note: UCRL-PROC-208678, Eurographics Association, Aire-la-Ville, Switzerland pp. 67--74. June, 2004.



P.-T. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci. “A Topological Hierarchy for Functions on Triangulated Surfaces,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 10, No. 4, Note: UCRL-JRNL-208700, pp. 385-396. July/August, 2004.



P.-T. Bremer, V. Pascucci, B. Hamann. “Maximizing adaptivity in hierarchical topological models,” In Trends in Software, Note: UCRL-BOOK-200013, Edited by T. Moeller and B. Hamann and B. Russell, Springer, pp. 121--130. January, 2004.



K. Cole-McLaughlin, V. Pascucci. “Multiresolution Representation of Topology,” In Proceedings of the 4th IASTED International Conference on Visualization, Imaging, And Image Processing (VIIP 2004), Marbella, Spain, Vol. 2004, Note: UCRL-PROC-208680, pp. 282--289. September, 2004.



H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Local and Global Comparison of Continuous Functions,” In Proceedings of the IEEE Conference on Visualization (VIS-04), Note: UCRL-PROC-208677, pp. 275--280. October, 2004.



H. Edelsbrunner, J. Harer, A. Mascarenhas, V. Pascucci. “Time-Varying Reeb Graphs for Continuous Space-Time Data,” In SCG '04: Proceedings of the Twentieth Annual Symposium on Computational Geometry, Brooklyn, New York, USA, Note: UCRL-PROC-208697, ACM Press, pp. 366--372. 2004.
ISBN: 1-58113-885-7



D. Laney, V. Pascucci. “Progressive Compression of Volumetric Subdivision Meshes,” In Proceedings of the International Symposium on 3D Data Processing, Visualization, and Transmission (3DPVT), Note: UCRL-CONF-203679, pp. 293--300. September, 2004.



L. Linsen, V. Pascucci, M.A. Duchaineau, B. Hamann, K.I. Joy. “Wavelet-Based Multiresolution with N-th-Root-of-2,” In Geometric Modeling, Dagstuhl 2002. Proceedings of the Dagstuhl Seminar on Geometric Modeling, Note: UCRL-PROC-208699, Dagstuhl, Germany May, 2004.



L. Linsen, J.T. Gray, V. Pascucci, M.A. Duchaineau, B. Hamann, K.I. Joy. “Hierarchical Large-scale Volume Representation with 3rd-root-of-2 Subdivision and Trivariate B-spline Wavelets,” In Geometric Modeling for Scientific Visualization, Edited by G. Brunnett and B. Hamann and H. Mueller, Springer-Verlag, pp. 359--377. 2004.
DOI: 10.1007/978-3-662-07443-5_22



L. Linsen, V. Pascucci, M.A. Duchaineau, B. Hamann, K.I. Joy. “Wavelet-Based Multiresolution with n-th-root-of-2,” In Proceedings of Geometric Modeling, Dagstuhl 2002, Dagstuhl, Germany, Note: UCRL-PROC-208699, May, 2004.



A. Mascarenhas, M. Isenburg, V. Pascucci, J. Snoeyink. “Encoding Volumetric Meshes For Streaming Isosurface Extraction,” In Proceedings of the International Symposium on 3D Data Processing, Visualization, and Transmission (3DPVT), Note: UCRL-PROC-208696, pp. 293--300. September, 2004.



A. Paoluzzi, V. Pascucci, G. Scorzelli. “Progressive BSP Representation and Boolean Operations for Dimension-Independent Polyhedra,” In ACM Symposium on Solid Modeling, Note: UCRL-PROC-208679, pp. 203-211. June, 2004.



V. Pascucci. “Isosurface Computation Made Simple: Hardware Acceleration, Adaptive Refinement and Tetrahedral Stripping,” In Proceedings of the Joint Eurographics - IEEE TVCG Symposium on Visualization (VisSym), Note: UCRL-CONF-202459, pp. 293--300. May, 2004.



S. Pesco, P. Lindstrom, V. Pascucci, C.T. Silva. “Implicit Occluders,” In Proceeding of IEEE Volume Visualization 2004, pp. 47--54. 2004.



M.J. van Kreveld, R. van Oostrum, C.L. Bajaj, V. Pascucci, D.R. Schikore. “Efficient contour tree and minimum seed set construction,” In Surface Topological Data Structures: An Introduction for Geographical Information Science, Note: UCRL-BOOK-200018, Edited by Sanjay Rana and Jo Wood, John Wiley & Sons, pp. 71--86. May, 2004.