December 2013 Commit Log

Number of Commits:
52
Number of Active Developers:
10
allen 2013-12-26 10:40 Rev.: 51412

Changed the sub.mk so that the uda2vis library is build regardless of the VISIT flag

0 lines of code changed in 4 files:

harman 2013-12-21 17:29 Rev.: 51411

reverted back to 51366.

Commit 51367 caused problems with nightly RT.

0 lines of code changed in 4 files:

jthornoc 2013-12-20 11:39 Rev.: 51407

Adding a max KE limit.

0 lines of code changed in 4 files:

dav 2013-12-19 16:31 Rev.: 51406


D Wasatch/transport/EnthalpyTransportEquation.cpp
A + Wasatch/transport/EnthalpyTransportEquation.cc

- Renamed to match Uintah conventions and the name of the file in the sub.mk file...
I've seen this before, but still don't know how an error doesn't occur when
the suffix is ".cc" in the sub.mk file, but the actual file is a ".cpp".

M Wasatch/Expressions/BoundaryConditions/BoundaryConditions.cc

- Quited compiler warning by adding end-of-line to end of file.
- Fixed #include to specify entire path per Uintah conventions.


M Wasatch/transport/sub.mk

- Added newline at end of file, removed tabs.

197 lines of code changed in 6 files:

jsutherland 2013-12-18 19:20 Rev.: 51403

Don’t build preprocessor or table query for RadProps when building for internal Uintah use.

0 lines of code changed in 2 files:

harman 2013-12-18 17:56 Rev.: 51402

updateSumI()
- optimization ~10% improvement.

0 lines of code changed in 2 files:

harman 2013-12-18 13:07 Rev.: 51400


findRayDirection()
add numerical fuzz to prevent inf values when the random number is exactly 0.5.

This should not change the answers.

21 lines of code changed in 3 files:

harman 2013-12-18 11:24 Rev.: 51399

Now using the ln option
-f, --force remove existing destination files

when creating symbolic links in the local_RT directory.


5 lines of code changed in 1 file:

jsutherland 2013-12-18 09:39 Rev.: 51398

Updates due to minor RadProps API change.

0 lines of code changed in 4 files:

jthornoc 2013-12-17 16:27 Rev.: 51396

Revert "Removing two unused functions."

This reverts commit c8065da9bc9465c4756bef7eabdc20b55ba18d34.

0 lines of code changed in 2 files:

jthornoc 2013-12-17 16:27 Rev.: 51395

Removing two unused functions.

3 lines of code changed in 1 file:

jas 2013-12-17 15:36 Rev.: 51394

Reverting the use of Boost to perform file and directory copies for restarting.

0 lines of code changed in 277 files:

harman 2013-12-17 08:56 Rev.: 51393

Comparison of divQ (CPU vs GPU) for partially developed methane flame restart case.

323 lines of code changed in 6 files:

jthornoc 2013-12-16 17:18 Rev.: 51392

Adding in Ben's first-cut clipping method.

0 lines of code changed in 6 files:

jthornoc 2013-12-16 13:17 Rev.: 51391

This should fix the segfaults for the RT. Old density was being requested for some
problems and was not being properly created.

This does put an extra variable in the checkpoint so GS's need an
update.

114 lines of code changed in 9 files:

jsutherland 2013-12-16 09:17 Rev.: 51389

Update to reflect ExprLib API change.

0 lines of code changed in 2 files:

jas 2013-12-15 19:25 Rev.: 51388

Add boost library dependency for dumptfields.

5 lines of code changed in 1 file:

jas 2013-12-15 18:38 Rev.: 51387

Use boost filesystem library for copying files instead of using the system cp command

306 lines of code changed in 4 files:

ahumphrey 2013-12-15 17:10 Rev.: 51386

Make sure to only init and clear GPU-DW if actualy using devices. This code was executing when HAVE_CUDA was defined without SUS explicitly getting the -gpu option.

0 lines of code changed in 2 files:

jthornoc 2013-12-13 15:28 Rev.: 51385

Adding a helper class for adding species to the table lookup.
For scalar equations, use the old density if stage > 0

65 lines of code changed in 14 files:

harman 2013-12-12 17:06 Rev.: 51382

Using jpg as the intermediate file.

removed -depth options on convert command

updated ffmpeg.


38 lines of code changed in 1 file:

dav 2013-12-12 16:42 Rev.: 51381


This fixes the problem Todd was seeing with very large domains.

M Core/Grid/Grid.cc

- Fix the problem with precision. Before, for large numbers, adding epsilon
did not change the number (due to not enough precision). See in-code
comments explaining this fix.

- Alphabetize the #includes.

M R_Tester/toplevel/startLocalTest

- Clean up (add white space) some of the error messages.
- Add the ability to point at a 'gold standard' TestData directory that is
in a different location then the current directory. To use this feature,
set the TEST_DATA environment variable with an absolute path to the
gold standard directory of choice.

M R_Tester/toplevel/generateGoldStandards.py

- Clean up output message.

M R_Tester/helpers/selectComponents.sh

- Print out a list of possible test components to make it easier for the user
to set the TEST_COMPONENTS environment variable.

101 lines of code changed in 7 files:

jthornoc 2013-12-12 10:31 Rev.: 51377

Adding a table probe script.
Some ultra-minor edits.

1 lines of code changed in 3 files:

harman 2013-12-11 12:34 Rev.: 51376

More descriptive exception message.

0 lines of code changed in 2 files:

harman 2013-12-11 11:12 Rev.: 51375

Cover up. Back off the tolerances of the RMCRT_VR test. It's been failing in the last significant digit, optimized test only and it's not repeatable.

0 lines of code changed in 2 files:

harman 2013-12-10 16:53 Rev.: 51374

added RMCRT boundary flux comparision test with pre-computed "gold standard"

339 lines of code changed in 9 files:

harman 2013-12-09 13:52 Rev.: 51372

changed name if preprocessor variable

0 lines of code changed in 2 files:

harman 2013-12-09 13:51 Rev.: 51371

Using
#if DEBUG 1,2 or 3
for better control of cpu/gpu comparison output statements. These will eventuall go away.

46 lines of code changed in 2 files:

harman 2013-12-09 12:55 Rev.: 51370

Added Stencil7 support.

0 lines of code changed in 2 files:

jsutherland 2013-12-08 14:54 Rev.: 51368

Okay - this should fix warches…

30 lines of code changed in 5 files:

dav 2013-12-08 14:46 Rev.: 51367

Number of cleanups and a fix to get Wasatch in Arches compiling.

M CCA/Components/Wasatch/CoordinateHelper.cc
M CCA/Components/Wasatch/TaskInterface.cc

- Comment out "oldVar" as it isn't used and this removes a compiler warning.


M CCA/Components/Wasatch/Expressions/BoundaryConditions/PressureBC.cc

- Add newline to end of file to remove compiler warning.

M CCA/Components/Wasatch/Expressions/BoundaryConditions/VardenMMSBCs.cc

- Don't define your own PI, just use the built in M_PI.
- #include paths should be absolute <>, not relative "".
- Add newline to end of file to remove compiler warning.

M CCA/Components/Wasatch/Expressions/BoundaryConditions/VardenMMSBCs.h

- Place multiple include guard at very top of file to speed file processing.
- #include paths should be absolute <>, not relative "".
- Remove tabs, add some white space for readability.

M CCA/Components/Arches/ExplicitSolver.cc

- Wasatch_in_Arches was not compiling for me... Had to fix use of
TaskInterface constructor - added in State variable. I assume this
is correct (at least it compiles). If someone from Warches could
verify, that would be great. I note James took a shot at fixing this
in the previous commit, but he only added the (non-existent?) variable
'state', to one of the places the state was needed.
- Indent #includes for readability.

M R_Tester/toplevel/startLocalTest
M R_Tester/helpers/runSusTests.py

- Allow the user to specify a different directory of Gold Standards to
test against. This is done using the environment variable
TEST_DATA. In other words, if you have built Gold Standards in
.../Uintah/opt/TestData, and you wish to test your debug build
against the opt generated gold standards, then, from your debug
directory, you do (assuming it is parallel to the opt dir):

setenv TEST_DATA ../opt/TestData

and then run "make runLocalRT" as normal.

M CCA/Components/Wasatch/TaskInterface.h

- Line up parameters for readability.

119 lines of code changed in 16 files:

jsutherland 2013-12-08 14:06 Rev.: 51366

Fix Warches.

1 lines of code changed in 1 file:

jsutherland 2013-12-07 20:17 Rev.: 51365

Commit made on behalf of Abhishek.
This is a step toward Wasatch GPU execution.

80 lines of code changed in 10 files:

harman 2013-12-06 12:35 Rev.: 51364

Hard code the random number to a constant value if

#define DEBUG

is set. Useful for debugging and comparing with GPU code.


16 lines of code changed in 1 file:

colovos 2013-12-06 05:31 Rev.: 51363

Add variability and scale effects to Arenisca. A seed of zero turns off variability.
The max number of substeps has been changed to 100 from 15000 for speed.
The tolerance has been changed from 1e-9 to 1e-6 for speed.

0 lines of code changed in 4 files:

harman 2013-12-05 17:00 Rev.: 51362

Finished filling in the boundaryFlux computations.

The results have not been verified.

132 lines of code changed in 3 files:

tsaad 2013-12-05 12:06 Rev.: 51361

Propagate multistage time-integrator information into the OldVariable class. This is the first step in getting our variable density algorithm working with multistage integrators.

23 lines of code changed in 5 files:

jthornoc 2013-12-05 01:47 Rev.: 51360

This fixes a segfault resulting from Martin's recent commit. If the case is periodic, then the <BoundaryCondition> section may not exist which was the root of the problem.

7 lines of code changed in 1 file:

jthornoc 2013-12-05 01:21 Rev.: 51359

Assign source stage after table is setup. This is required because the
table setup may reassign the eqn stage from the default value if it is
determined to be a table indep. variable.

18 lines of code changed in 1 file:

harman 2013-12-04 17:53 Rev.: 51358

Started filling in the boundaryFlux computation
It compiles and that's it.

141 lines of code changed in 5 files:

wyxpuma 2013-12-04 17:07 Rev.: 51357

to update the problemsetup for WallHT so that WallHT will actually work

2 lines of code changed in 1 file:

dav 2013-12-03 17:42 Rev.: 51353


Enable CUDA in Wasatch 3P build if Uintah is configured with CUDA.

M build_scripts/build_wasatch_3p.sh

- Handle newly passed in (from configure) with-cuda (yes/no) flag so
that SpatialOps will build with CUDA support as necessary.

M configure
M configure.ac

- Pass sci_required_cuda to build_wasatch_3p script.

M StandAlone/sub.mk

- Some OSes require the Wasatch 3P libs to be explicitly listed when linking sus.

15 lines of code changed in 5 files:

harman 2013-12-03 15:06 Rev.: 51352

problemSetup()
using root-ps instead of probl_spec for periodic BC bulletproofing.

1 lines of code changed in 1 file:

harman 2013-12-03 13:12 Rev.: 51351

Now scheduling stencil7 variables for cpu and gpu.

Added bulletproofing. Throw an exception if the user specifies periodic boundaries.

21 lines of code changed in 2 files:

jthornoc 2013-12-02 23:46 Rev.: 51350

Removing a print statement.

0 lines of code changed in 1 file:

jthornoc 2013-12-02 23:17 Rev.: 51349

This didn't make the last commit.
'

1 lines of code changed in 1 file:

jthornoc 2013-12-02 23:17 Rev.: 51348

Add the ability to override the density guess setting for table IVs.

9 lines of code changed in 3 files:

jsutherland 2013-12-02 15:57 Rev.: 51347

Fix a bug on the radprops evaluator expression where I wasn’t bumping iterators on the species compositions.

2 lines of code changed in 1 file:

ahumphrey 2013-12-02 13:55 Rev.: 51346

Cleanup preallocateDeviceMemory() using subtype information from GridVariables. Much cleaner.
Fix incorrect position of mutex unlock in device/host copy methods.

0 lines of code changed in 2 files:

jthornoc 2013-12-02 12:07 Rev.: 51344

Warnings.

0 lines of code changed in 10 files:

ahumphrey 2013-12-02 11:12 Rev.: 51343

Complete support for GPUStencil7.
A cleaner solution would be quite easy with type information support for GPU Variables. This will be the next step.
Also some code cleanup.

224 lines of code changed in 1 file:

harman 2013-12-02 11:00 Rev.: 51342

randDevice() & randDblExcDevice()
- now using a thread index that contains threadIdx(x,y,z). This provides reproduceability of the results.


3 lines of code changed in 1 file:

November 2013 »

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