February 2013 Commit Log

Number of Commits:
83
Number of Active Developers:
11
awabboud 2013-02-27 15:53 Rev.: 49953

Added two new precipitation growth terms. Restructured Ostwald ripenign so that only S bar is calculated rather than the enitre source. Renamed a few variables in qmom parsing.

501 lines of code changed in 6 files:

harman 2013-02-26 14:07 Rev.: 49945

ScheduleComputeInternalForce()
- add a 'requires' for pStressLabel without getting it from the DW.
pStressLabel with then be checkpointed so the user can restart a
rigidmpmice calculation using mpmice.

0 lines of code changed in 2 files:

harman 2013-02-25 17:43 Rev.: 49943


Added fflush statements. Stampede needs to be flushed. If you don't then nothing is ever written.

4 lines of code changed in 2 files:

harman 2013-02-25 10:37 Rev.: 49942

Added "#" to output file header so octave and gnuplot will ignore it.

2 lines of code changed in 2 files:

harman 2013-02-24 15:12 Rev.: 49941

Use unique FileInfo varLabel names. This prevents clashes when multiple
modules are used.

4 lines of code changed in 2 files:

jthornoc 2013-02-23 10:41 Rev.: 49940

Only assign density if actually computed. If not computed, then this
should indicate that there wasn't an inlet face iterator on this particular
patch for this intrusion.

Note that the intrusion report that prints is still broken.

1 lines of code changed in 1 file:

jthornoc 2013-02-23 01:51 Rev.: 49939

Fix some warnings.

Tweaks to the intrusion class. Still hunting a strange density issue...

65 lines of code changed in 5 files:

ahumphrey 2013-02-22 17:35 Rev.: 49938

Add MAGMA Equivalent LAPACK calls to sci_lapack.cc
Refine MAGMA build system support
Generate new configure script

116 lines of code changed in 5 files:

harman 2013-02-22 11:11 Rev.: 49936

fixed bulletproofing

1 lines of code changed in 1 file:

guilkey 2013-02-21 15:39 Rev.: 49935

Force eval_dp_dJ to give the same value as computeBulkModulus

0 lines of code changed in 2 files:

guilkey 2013-02-21 15:20 Rev.: 49934

Change the number size of UI, DC and GC arrays.

3 lines of code changed in 1 file:

harman 2013-02-21 13:34 Rev.: 49933

Turned off debugging output.

added fflush() commented out.

7 lines of code changed in 1 file:

jthornoc 2013-02-21 12:25 Rev.: 49932

Attempting some bullet proofing on setting a constant density across an
intrusion inlet face.

33 lines of code changed in 2 files:

jthornoc 2013-02-21 12:25 Rev.: 49931

Fixing a couple minor issues with the Inject source term.

2 lines of code changed in 1 file:

ahumphrey 2013-02-21 10:45 Rev.: 49930

Add support for using MAGMA library (Matrix Algebra on GPU and Multicore Architectures).
Add some whitespace in configre.ac for readability (--with and --enable sections).
Generate new configure script.

1388 lines of code changed in 4 files:

cam 2013-02-21 10:15 Rev.: 49929

remove (unnecessary) hard-coded path from udaReader sub.mk

5 lines of code changed in 1 file:

jthornoc 2013-02-21 05:13 Rev.: 49928

Intrusions weren't accounting for the inert streams when <post_mix> was
setup in the properties. This is now fixed.

32 lines of code changed in 3 files:

jthornoc 2013-02-21 02:56 Rev.: 49927

Exit is negative mol fractions are found.

3 lines of code changed in 1 file:

jthornoc 2013-02-21 02:46 Rev.: 49926

Set a flag for inerts when used in the property calculation.

22 lines of code changed in 1 file:

tsaad 2013-02-20 17:22 Rev.: 49925

Increase the number of timesteps for the performance tests in a last attempt at fixing the failing Wasatch RT. Thanks Todd.

4 lines of code changed in 1 file:

harman 2013-02-20 14:06 Rev.: 49922

Covering up a numerical fuzz issue.

periodic_disks & advect_2L_3D_slabs: Using the default values for abs_tolerance and rel_tolerance.

2 lines of code changed in 1 file:

tsaad 2013-02-20 10:40 Rev.: 49921

Use the newly created ifstream utilities in the TurbulentInletBC. This should provide faster parsing as well as avoiding the inconvenience of running gzip on the Turbulent data generated by the DigitalFilterGenerator.

21 lines of code changed in 1 file:

tsaad 2013-02-20 10:35 Rev.: 49920

Add tools to parse regular ASCII input files using ifstream. These provide the same interface as the gzip utilities for convenience, as well as a unified templated getValue function.

257 lines of code changed in 3 files:

tsaad 2013-02-20 10:08 Rev.: 49919

Remove some leftover debugging code.

0 lines of code changed in 1 file:

tsaad 2013-02-20 10:01 Rev.: 49918

Fix a bug in OldVariable when trying to create OldVars before their varlabels are created.

6 lines of code changed in 1 file:

jthornoc 2013-02-20 03:05 Rev.: 49916

This didn't get committed earlier when Arches was allowed to have
intrusions. This will keep the timestep from being zero (ala MPMArches)
when intrusions are present. This is using some old code that could
use an update....

11 lines of code changed in 1 file:

jthornoc 2013-02-20 03:05 Rev.: 49915

Fix a warning.

0 lines of code changed in 1 file:

guilkey 2013-02-19 17:45 Rev.: 49914

Additional information on the citation

1 lines of code changed in 1 file:

guilkey 2013-02-19 17:44 Rev.: 49913

Add a citation for the pressure equation

4 lines of code changed in 1 file:

harman 2013-02-19 16:21 Rev.: 49911

Passing restart_problem_spec into the OnTheFly Analysis modules.

1stLawThermo: now parsing the restart_problem_spec on a
restart for the MPM material properties


49 lines of code changed in 24 files:

tsaad 2013-02-19 10:54 Rev.: 49910

increase the load/timestep on the Wasatch performance tests.

5 lines of code changed in 1 file:

guilkey 2013-02-19 10:51 Rev.: 49909

Make changes consistent with moving calculation of L and F out of the material
models. Because this is "rigid" MPM, the L is assigned to be zero, and F is
assigned to be the Identity.

24 lines of code changed in 1 file:

guilkey 2013-02-18 13:20 Rev.: 49908

Set tensorF_new (temporary value of F) to the identity for localized particles
to avoid numerical problems in the polarDecomposition later.

1 lines of code changed in 1 file:

jsutherland 2013-02-17 18:10 Rev.: 49905

Fix some issues that Amir found when OldVariable.h was included in MomentumTransportEquation.cc

10 lines of code changed in 2 files:

guilkey 2013-02-17 09:01 Rev.: 49904

Populate all values for the getEigenValues function, even if some are identical.

7 lines of code changed in 1 file:

jthornoc 2013-02-16 03:22 Rev.: 49903

Requesting an incorrect number of ghost cells.

1 lines of code changed in 1 file:

jthornoc 2013-02-16 03:20 Rev.: 49902

This commit permits Arches to handle intrusions (before only MPMArches
could handle intrusions). Could use some more work, but otherwise
the basic functionality is there.

Also allowing the injected source terms to be read from a file.

163 lines of code changed in 8 files:

harman 2013-02-15 16:30 Rev.: 49899

It now works on a single level.



167 lines of code changed in 2 files:

kamojjala 2013-02-15 11:54 Rev.: 49898

Updating the UI number in the Weibull parser for PEAKI1I.

1 lines of code changed in 1 file:

kamojjala 2013-02-15 10:08 Rev.: 49894

Updating the Kayenta wrapper to match the updated model.

314 lines of code changed in 2 files:

tsaad 2013-02-14 15:38 Rev.: 49891

sorry bigmac...

3 lines of code changed in 1 file:

tsaad 2013-02-14 15:25 Rev.: 49890

Simplify the turbulent inlet BC specification in Wasatch.

42 lines of code changed in 1 file:

tsaad 2013-02-14 14:05 Rev.: 49888

Allow developers to set boundary conditions on fields that are not specified in the input file (i.e. NO uintah boundary iterators). This is done by setting the BC on the auxiliary field using one of the mandatory fields specified in the input file.

29 lines of code changed in 2 files:

tsaad 2013-02-14 12:50 Rev.: 49887

add turbulent inlet test to the RT suite. This will break the Wasatch RT. Will update tomorrow morning.

2 lines of code changed in 1 file:

tsaad 2013-02-14 12:19 Rev.: 49885

Add turbulent inlet boundary condition to Wasatch.

268 lines of code changed in 4 files:

tsaad 2013-02-14 11:36 Rev.: 49884

Allow the digitalFilterGenerator to output the face on which it is applied. This is needed for Wasatch and to avoid passing all sorts of Uintah related information along to the Wasatch expressions. Alex, I think that the generator should live outside Arches.

5 lines of code changed in 2 files:

tsaad 2013-02-14 10:45 Rev.: 49883

Allow the problemSpec reader to get integer-valued attributes.

23 lines of code changed in 2 files:

guilkey 2013-02-14 10:17 Rev.: 49882

Delete pVelGradLabel(_preReloc) in the destructor.

5 lines of code changed in 1 file:

guilkey 2013-02-13 16:19 Rev.: 49881

Move the calculation of velocity gradient and deformation gradient out of the constitutive models,
and just have one version of the code to maintain in SerialMPM.

Other changes:
1. Add the ability to specify a number of subcycles in the calculation of F in the input file. Use the MPM Flag "minimum_subcycles_for_F"
2. Add the option to use an approximation to the exponential to compute the increment in F. Use a negative value for "minimum_subcycles_for_F", with the absolute value being the number of terms in the TS approximation.
3. Disable support for Fracture. Most fracture code persists, but won't work. It will be removed later.

This will definitely break the regression tester, but the differences have been verified to be small, or in some cases limited to the number of checkpoint variables changing (pTempPrevNew has been removed, whose brainchild was that again?).

947 lines of code changed in 45 files:

qymeng 2013-02-13 14:19 Rev.: 49880

cleanup some debuging code left in last commit

1 lines of code changed in 1 file:

qymeng 2013-02-13 14:13 Rev.: 49879

Fixed a race condition in DataArchiver

8 lines of code changed in 1 file:

harman 2013-02-13 10:05 Rev.: 49878

more work on it. Next is to save & retrieve data from DW.

177 lines of code changed in 2 files:

qymeng 2013-02-12 22:31 Rev.: 49877

Remove reduction of delT on individual levels.
Only compute a global delT on grid.
This will save one MPI_Allreduce on each level.

21 lines of code changed in 3 files:

jthornoc 2013-02-12 09:13 Rev.: 49875

Thanks to Todd, removing a lot switch statements and replacing them with
te current version.

33 lines of code changed in 1 file:

awabboud 2013-02-11 15:23 Rev.: 49873

Add in the ability to specify the velocity in cylindricla coordinates v_z, v_r, v_theta. These are transformed into appropriate Cartesian components depending on inlet face.

100 lines of code changed in 1 file:

harman 2013-02-11 14:16 Rev.: 49872

Added a new on-the-fly analysis module that will compute the min/max
of variable. This is in very rough shape.

782 lines of code changed in 4 files:

tsaad 2013-02-11 12:46 Rev.: 49871

Give the performance tester another shot for Wasatch in anticipation of the new inline stencil operators. Note that previously, the performance tests were failing, apparently, due to short runtime. This time increase resolution and number of timesteps to increase runtime - hopefully this will fix things.

11 lines of code changed in 1 file:

jthornoc 2013-02-11 11:25 Rev.: 49870

Exposing DORadiation model to RadPropertyCalculator (which could include
RadProps).

228 lines of code changed in 5 files:

harman 2013-02-09 13:05 Rev.: 49868

Now using average value, between two cells for enthalpy entering/leaving the control volume.

95 lines of code changed in 1 file:

jthornoc 2013-02-08 12:34 Rev.: 49867

actually return something....

1 lines of code changed in 1 file:

tsaad 2013-02-07 16:21 Rev.: 49866

Additional fixes to OldVariable.cc: Use the oldDW to grab the values of the old variable. Also add proper checks for variables that DO NOT exist at initialization. This fix also seems to work with fields managed by Wasatch. As of this commit, OldVariable works for me.

17 lines of code changed in 1 file:

tsaad 2013-02-07 15:51 Rev.: 49865

Fix bug in OldVariable.cc by passing the proper ghost type to the task requires.

13 lines of code changed in 1 file:

tsaad 2013-02-07 15:17 Rev.: 49864

fix usage documentation.

3 lines of code changed in 1 file:

tsaad 2013-02-07 15:04 Rev.: 49863

rename OldVariable.cpp to OldVariable.cc to conform to other files and match sub.mk

258 lines of code changed in 2 files:

jsutherland 2013-02-07 14:43 Rev.: 49862

First cut at implementing a general mechanism for keeping "old" variables around.

406 lines of code changed in 5 files:

jsutherland 2013-02-07 14:43 Rev.: 49861

minor formatting changes

23 lines of code changed in 1 file:

jsutherland 2013-02-07 14:43 Rev.: 49860

Rename ioFieldSet_ to lockedFields_ as this name is more descriptive.

13 lines of code changed in 3 files:

jsutherland 2013-02-07 14:43 Rev.: 49859

Remove a few superfluous includes.

3 lines of code changed in 1 file:

jthornoc 2013-02-07 02:47 Rev.: 49858

Fixing a couple bugs with the BC-from-inputfile capability. Should now
allow for multiple input files to be loaded for multiple boundary
conditions.

111 lines of code changed in 3 files:

jthornoc 2013-02-06 23:45 Rev.: 49857

Adding new property interface for Ben.

528 lines of code changed in 10 files:

jthornoc 2013-02-06 23:43 Rev.: 49856

Removing some comments.

1 lines of code changed in 1 file:

jthornoc 2013-02-06 23:42 Rev.: 49855

Removing a extraneous function.

0 lines of code changed in 2 files:

jthornoc 2013-02-06 23:41 Rev.: 49854

Generalizing the boundary condition interface to allow other abribtrary
functions to be used. This hasn't been turned on yet.

533 lines of code changed in 2 files:

jthornoc 2013-02-06 23:35 Rev.: 49853

Cleaning up the logic a bit which will allow the "FromFile" option to
work.

4 lines of code changed in 1 file:

harman 2013-02-06 08:52 Rev.: 49851

added Kinetic energy contributions to the flux in/out of the system.


22 lines of code changed in 2 files:

jas 2013-02-05 20:06 Rev.: 49850

Fix broken logic for static specification.

1 lines of code changed in 1 file:

jas 2013-02-05 15:30 Rev.: 49849

Pass static build specification to Wasatch 3p libraries to ensure that
static libraries are built for both wasatch_3p and uintah.

15 lines of code changed in 3 files:

harman 2013-02-05 13:46 Rev.: 49847


- Removed a hack.

- The mpm specific heat is parsed from the input file and stored in a global map.

- Added a list of assumptions to the header of the output file.

25 lines of code changed in 2 files:

harman 2013-02-05 08:25 Rev.: 49844

COVER UP
only run on optimized tests.

1 lines of code changed in 1 file:

harman 2013-02-04 16:05 Rev.: 49843

using a SFCVars iterator option

- multiply cv * gamma in the flux calculation
- removed delT multiplication.

9 lines of code changed in 1 file:

qymeng 2013-02-01 14:39 Rev.: 49842

Fix a typo of last commit

2 lines of code changed in 2 files:

qymeng 2013-02-01 14:32 Rev.: 49841

libunwind is not required for gperftools shared lib build.

6 lines of code changed in 2 files:

tsaad 2013-02-01 09:34 Rev.: 49840

improve the performance of the area fraction calculation for intrusions by getting rid of a few unecessary loops and algebraic operations.

11 lines of code changed in 1 file:

January 2013 »

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