June 2013 Commit Log

Number of Commits:
181
Number of Active Developers:
13
harman 2013-06-29 12:01 Rev.: 50615

removed switchDebug variables.

0 lines of code changed in 2 files:

jthornoc 2013-06-28 11:02 Rev.: 50609

Fixing an error with the new scalar variance implementation to return
zero when in walls.

Moving the heptane_pipe and coal_pipe RT tests over to ARCHES and
modernizing the input files.

22 lines of code changed in 4 files:

jthornoc 2013-06-28 09:17 Rev.: 50608

Remove a debugging print statement.
Update some of the new input files to get ready for new RT tests.
Make d_calcVariance false by default.

9 lines of code changed in 3 files:

jsutherland 2013-06-27 20:25 Rev.: 50607

Use some full paths rather than abbreviated ones to get make the cuda compiler happy.

7 lines of code changed in 6 files:

harman 2013-06-27 15:54 Rev.: 50606

Added diagnostic label (eq_press_itersLabel) to the equilibration pressure task.
This allows the user to visualize where equilibration pressure is having problems.


50 lines of code changed in 3 files:

harman 2013-06-27 15:38 Rev.: 50605

printParticleCount()
- ignore the 0 particle count bulletproofing if using Arches

1 lines of code changed in 1 file:

harman 2013-06-27 12:31 Rev.: 50604

printParticleCount()
- added missing conditional

12 lines of code changed in 1 file:

harman 2013-06-27 12:05 Rev.: 50603

printParticleCount()
- throw an exception if 0 particles are created. This can happen if the grid resolution is too
coarse in multi-level simulations. You probably want to know about this before you burn 1M SUs


15 lines of code changed in 1 file:

harman 2013-06-27 10:09 Rev.: 50602

ImpMPM, MPM, DDT1:
- added component names in task name. It's easier to "see" what task is running when if
the name is complete.

TiledRegridder:
- output refinement ratio for each level in the grid statistics section.

10 lines of code changed in 4 files:

jthornoc 2013-06-26 16:31 Rev.: 50601

More broken function calls in TabPropsInterface.

Updating HeatLoss model to remove some debugging and to add flexibility.

19 lines of code changed in 3 files:

jthornoc 2013-06-26 16:13 Rev.: 50600

Bad function call in TabPropsInterface.

1 lines of code changed in 1 file:

jthornoc 2013-06-26 16:02 Rev.: 50599

* Not forcing a hard coded name on the particle absorption coefficient.
* Added a new variable transformation for single mixture fraction cases.
* Adiabatic enthalpy is now computed via the mixture fraction to force consistency with the enthalpy equation. Previously a table lookup on adiabatic enthalpy was being used which 1) was slow and 2) was lagged in time by dt which caused artificial heat loss. Note this requires that users specify the fuel and oxidizer enthalpies in the table itself using the KEY/value tokens in the table header when using the heat loss model.
* Trim an unused transform
* allocate the property model vars independently from the compute function. Updated all property models accordingly.
* updated some input files accordingly

735 lines of code changed in 22 files:

jthornoc 2013-06-26 16:01 Rev.: 50598

Simplifying the var transform proceedure by passing the inert mass
fraction for all cases.

Getting the inerts to the heat loss model.

39 lines of code changed in 4 files:

awabboud 2013-06-26 10:57 Rev.: 50594

Allow for the Tolman length to be an input parameter, rahter than set = 0.2

3 lines of code changed in 1 file:

tsaad 2013-06-26 09:18 Rev.: 50592

enforce the momentum full rhs to be 0 at walls on a few tests. This is the CORRECT way of doing this and eventually will be done automatically within Wasatch as we refactor the BC input interface. This will break the RT on these three tests, so don't panic.

3 lines of code changed in 1 file:

amir 2013-06-25 22:53 Rev.: 50591

Putting back the boundary consitions for density, density_* and primary variables. density_* will be handled automatically inside the code. The other ones should be entered in the input file as usual.

65 lines of code changed in 3 files:

jsutherland 2013-06-25 16:40 Rev.: 50590

More minor header cleanup

0 lines of code changed in 3 files:

jsutherland 2013-06-25 16:29 Rev.: 50589

Replace some deprecated spatialops header files

3 lines of code changed in 10 files:

tsaad 2013-06-25 16:18 Rev.: 50588

add kinetic energy example to regression tests.

5 lines of code changed in 1 file:

ahumphrey 2013-06-25 15:57 Rev.: 50586

#define proc0thread0cout.
This is to further reduce excess spew on large parallel runs when using the threaded scheduler.

7 lines of code changed in 1 file:

tsaad 2013-06-25 15:41 Rev.: 50584

Add an option to the MomentumEquations spec to trigger calculation of the KineticEnergy. One could either calculate the local pointwise field OR the total KE. This will reduce inputfile coding a lot.

47 lines of code changed in 3 files:

harman 2013-06-25 14:32 Rev.: 50583

accumulateMomentumSourceSinks()
Put the divergence of the viscous forces computation into a separate task.
*This should not change the answers.

220 lines of code changed in 7 files:

tsaad 2013-06-25 14:22 Rev.: 50582

1. Simplify the ReductionHelper and ReductionBase interfaces.
2. Extend the reduction expressions to work with PerPatch source fields.
3. Add expression that calculates local, pointwise kinetic energy.
4. Add expression that calculates the total kinetic energy (sum_over_cells).
5. Move some postprocessing expressions to the postprocessing directory.
6. A few cosmetic changes.

1176 lines of code changed in 24 files:

harman 2013-06-25 13:22 Rev.: 50581

Removed debugging output.

0 lines of code changed in 2 files:

harman 2013-06-24 17:32 Rev.: 50580

Adjust the iterator to include the x+,y+,z+ faces in the extra cells when
outputing SFC(*) variables.

63 lines of code changed in 2 files:

harman 2013-06-24 13:31 Rev.: 50578

The user can now output SFC(X,Y,Z)Variables, doubles and Vectors.

cavityFlow_dx.ups
- added example usage.

58 lines of code changed in 2 files:

harman 2013-06-24 12:13 Rev.: 50577

accumulateMomentumSourceSinks()
- shear stress components can now be saved to an uda.
- cleaned house.

* This should not change the answers.

128 lines of code changed in 4 files:

tsaad 2013-06-24 09:47 Rev.: 50575

Add regression test for reduction variables. Shorten the name of the Uintah reduction variable that Wasatch creates to manage reductions.

4 lines of code changed in 2 files:

beckvermit 2013-06-24 09:46 Rev.: 50574

DDT1 added to the switching criteria

336 lines of code changed in 5 files:

tsaad 2013-06-24 08:01 Rev.: 50573

cleanup and bulletproofing for reduction-variable managment in Wasatch.

100 lines of code changed in 3 files:

tsaad 2013-06-22 16:01 Rev.: 50572

add capability to Wasatch to manage and calculate reduction variables using expressions.

956 lines of code changed in 11 files:

tsaad 2013-06-22 14:57 Rev.: 50571

allow problemspec to get boolean attributes.

207 lines of code changed in 2 files:

harman 2013-06-21 13:53 Rev.: 50567

planeExtract.cc
- doAnalysis()
Output da separate file for each patch

combinePlaneData
- script for gluing together plane data for each variable, timestep, and level.

This "shortcut" approach may be slow for large planes

160 lines of code changed in 2 files:

jsutherland 2013-06-21 08:38 Rev.: 50565

Add a break statement to quiet a warning.

1 lines of code changed in 1 file:

jsutherland 2013-06-21 08:30 Rev.: 50564

Minor cleanup; initialize some variables.

20 lines of code changed in 6 files:

jsutherland 2013-06-21 08:30 Rev.: 50563

Add a missing break on a switch. This could have been causing some bugs for BCs on the poisson solver.

32 lines of code changed in 1 file:

jas 2013-06-21 08:01 Rev.: 50561

Open the chemistry tables once and pass around the file pointer.

36 lines of code changed in 2 files:

jsutherland 2013-06-21 07:54 Rev.: 50560

Initialize a few variables in the Wasatch constructor.

5 lines of code changed in 1 file:

jas 2013-06-21 07:45 Rev.: 50559

Remove blank lines as part of testing svn db upgrade.

0 lines of code changed in 2 files:

jas 2013-06-21 07:41 Rev.: 50558

Add another space for testing.

1 lines of code changed in 1 file:

jas 2013-06-21 07:41 Rev.: 50557

Add a space for testing.

1 lines of code changed in 1 file:

tsaad 2013-06-20 17:55 Rev.: 50554

add an example to Wasatch.py on how to create a new list of regression tests that include a subset of the local regression tests and that can be used when debugging a few tests only. This can be used to circumvent the need of selecting a subset of tests via a terminal dialog. If you don't understand what i'm talking about, feel free to ask to Todd.

13 lines of code changed in 1 file:

dav 2013-06-20 13:24 Rev.: 50553

Cosmetic fix so one can grep for 'Mod(', etc.

10 lines of code changed in 3 files:

jsutherland 2013-06-20 12:59 Rev.: 50552

Fix a problem with RadProps linking dependencies when TabProps is built with BSplines on.

4 lines of code changed in 2 files:

jsutherland 2013-06-20 12:59 Rev.: 50551

Only parse one density entry per TabProps block.

3 lines of code changed in 1 file:

jsutherland 2013-06-20 12:59 Rev.: 50550

Fix some output messages on transport equation construction.

2 lines of code changed in 1 file:

jsutherland 2013-06-20 12:59 Rev.: 50549

Better error trapping on initialization.

24 lines of code changed in 1 file:

jsutherland 2013-06-20 12:58 Rev.: 50548

Don't require the user to tell us the name for density in the table, since this is hard-coded by TabProps.

2 lines of code changed in 1 file:

harman 2013-06-20 09:48 Rev.: 50546

added 3 level AMR shocktube problem to the RT

13 lines of code changed in 1 file:

harman 2013-06-20 09:46 Rev.: 50545

added () around filename exceptions so you can detect when an errant space is present

0 lines of code changed in 2 files:

tsaad 2013-06-20 09:44 Rev.: 50544

start experimenting with DebugStream in the TaskInterface.

59 lines of code changed in 1 file:

cam 2013-06-20 09:20 Rev.: 50543

add ability to force VisIt version when building udaReader

0 lines of code changed in 2 files:

harman 2013-06-20 08:45 Rev.: 50542

added entry

1 lines of code changed in 1 file:

harman 2013-06-20 08:45 Rev.: 50541

compiler warnings

2 lines of code changed in 5 files:

harman 2013-06-20 08:43 Rev.: 50540

problemSetup()
- initialize d_inputMinTileSize after d_minTileSize has been populated.

4 lines of code changed in 1 file:

harman 2013-06-19 16:58 Rev.: 50539

Use % instead of fmod for integers.

2 lines of code changed in 1 file:

tsaad 2013-06-19 16:42 Rev.: 50538

rename the modifies with ghost cells to modifiesWithScratchGhost. Thanks to Guilkey and Thornock for the naming-inspiration.

25 lines of code changed in 3 files:

tsaad 2013-06-19 16:42 Rev.: 50537

pay respect to the Uintah guards and create a separate interface for Task::modifies that uses ghost cells with a big warning next to it.

11 lines of code changed in 1 file:

harman 2013-06-19 16:12 Rev.: 50536

problemSetup()
-throw an exception if the minimum patch size is not divisible by the refinement ratio.

If you don't catch this then the fine level cells won't properly overlap the coarse level cells.

12 lines of code changed in 3 files:

harman 2013-06-19 16:08 Rev.: 50535

added bulletproofing to catch situation where the number of fine cells used to compute the
coarse cell != the product of the refinement ratio.


21 lines of code changed in 1 file:

dav 2013-06-19 16:07 Rev.: 50534


Halfway through the 'configure' script, configure was not respecting
previous values set to CFLAGS (and CXXFLAGS). This caused the
-ffloat-store (used to turn off 80 bit precision in the processor)
flag to not actually be propagated to the CFLAGS variable in the
configVars.mk file. This fixes that problem. However, it is very
strange that this 'stopped' working at some point, and yet no problems
were detected because of it...

M configure
M configure.ac

12 lines of code changed in 2 files:

tsaad 2013-06-19 15:40 Rev.: 50533

pay respect to the Uintah guards and create a separate interface for Task::modifies that uses ghost cells with a big warning next to it.

34 lines of code changed in 3 files:

tsaad 2013-06-19 14:12 Rev.: 50531

allow task::modifies to specify ghost cells.

26 lines of code changed in 3 files:

jthornoc 2013-06-19 13:24 Rev.: 50530

Fix a copy/paste bug.

4 lines of code changed in 1 file:

jthornoc 2013-06-19 13:24 Rev.: 50529

Pass a reference of the mixing table to the heat loss model.

9 lines of code changed in 2 files:

harman 2013-06-19 10:15 Rev.: 50527

cosmetics:
- added dividers
- added horizontal and vertical spaces
- clean out some unused variables.

73 lines of code changed in 2 files:

tsaad 2013-06-18 16:08 Rev.: 50525

be smart about when to create the expression that calculates a stable dt: If deltmin and deltmax are equal then do not create the stableDT expression.

20 lines of code changed in 3 files:

tsaad 2013-06-18 15:25 Rev.: 50524

Fix VarLabel leak in Restarts for Wasatch and other components that do not save varlabels.

27 lines of code changed in 6 files:

jthornoc 2013-06-18 15:00 Rev.: 50523

Attach the name of the face to the output file for the handoff warnings.

19 lines of code changed in 2 files:

jthornoc 2013-06-18 12:59 Rev.: 50522

This should cover a density issue that intrusions with inlets were
getting when intrusions lined up with patch boundaries.

116 lines of code changed in 1 file:

harman 2013-06-18 11:22 Rev.: 50520

specify the X11 terminal size

0 lines of code changed in 2 files:

jsutherland 2013-06-18 10:03 Rev.: 50519

- Rework the nomenclature in the DensityCalculator to be more understandable.
- Many other changes to the DensityCalculator to improve efficiency and readability.
- Update property parsing to be a bit more compact
- fix a stray character in a comment in StrainTensorMagnitude.h

213 lines of code changed in 5 files:

jpeterson 2013-06-18 08:25 Rev.: 50518

Include literature citations that describe the various specific heat models.

0 lines of code changed in 8 files:

dav 2013-06-17 16:14 Rev.: 50517


Fix for memory leak (of VarLabels) when restarting a simulation.

M DataArchive/DataArchive.h

- Indent, use white space, line up parameters, general cosmetic cleanups
to make the spec easier to read.

M DataArchive/DataArchive.cc

- In order to restart from a previous UDA, sus (sometimes) must create
new VarLabels for the data in the old UDA. However, these VarLabels
were not being deleted, thus causing a (small) memory leak. This
fixes that problem.

58 lines of code changed in 2 files:

jsutherland 2013-06-17 14:59 Rev.: 50516

Update due to ExprLib interface changes.

2 lines of code changed in 2 files:

jsutherland 2013-06-17 14:41 Rev.: 50515

Split the DensityCalculator into source and header file, with an explicit template instantiation.

329 lines of code changed in 3 files:

jsutherland 2013-06-17 14:41 Rev.: 50514

Update some doxygen stuff.

253 lines of code changed in 3 files:

jthornoc 2013-06-17 10:45 Rev.: 50512

Added a new iterator for the solid intrusion cell (not the face) that is
acting as the inlet boundary. This should fix a bug we are seeing when
a patch boundary lines up with an intrusion outlet.

Fixed a print statement that should have gone to file but was going to
screen.

66 lines of code changed in 3 files:

tsaad 2013-06-17 10:10 Rev.: 50511

use switch instead of if in Aggregation and Birth models.

116 lines of code changed in 2 files:

tsaad 2013-06-17 09:43 Rev.: 50510

rename and initialize the enums that Alex just committed.

14 lines of code changed in 3 files:

awabboud 2013-06-17 09:15 Rev.: 50508

Change strings for model types to enums for birth and aggregation kernels.

54 lines of code changed in 3 files:

jsutherland 2013-06-15 07:11 Rev.: 50506

Simplify heat loss specification because we have some of this information hard-coded in tables (e.g. variable names) so we don't need to provide them through the input file.

13 lines of code changed in 1 file:

jpeterson 2013-06-14 20:43 Rev.: 50505

Added the NASA type polynomial specific heat model

181 lines of code changed in 7 files:

jsutherland 2013-06-14 16:45 Rev.: 50504

misc. minor cleanup

8 lines of code changed in 2 files:

jsutherland 2013-06-14 16:45 Rev.: 50503

- First cut at heat loss calculations in Wasatch to enable non-adiabatic tables.
- still needs regression testing.

295 lines of code changed in 4 files:

jsutherland 2013-06-14 12:39 Rev.: 50502

Okay - I have been beaten into submission. This reverts to the original implementation so that we can retain reasonable values in extra cells for visualization purposes.

0 lines of code changed in 2 files:

jsutherland 2013-06-14 12:21 Rev.: 50501

- Activate full inlined version of VelEst now that a few other issues have been resolved.
- minor changes to a few other things

19 lines of code changed in 3 files:

jsutherland 2013-06-14 12:03 Rev.: 50500

Put two initializations back in. These should avoid crazy values in extra cells, but at the cost of zeroing a field (fairly minor).

3 lines of code changed in 2 files:

jsutherland 2013-06-14 12:02 Rev.: 50499

Okay - I am settling on this version of PrimVar. It retains initialization to avoid ambiguous entries in ghost/extra cells, but avoids the temporary and extra operations that were in the previous version.

1 lines of code changed in 1 file:

jsutherland 2013-06-14 11:50 Rev.: 50498

Change an order of operations to fix a diffing test.

3 lines of code changed in 1 file:

jsutherland 2013-06-14 10:02 Rev.: 50497

Re-apply changes to PrimVar. There is only one test diffing, and this does not appear to be due to this change.

9 lines of code changed in 1 file:

jsutherland 2013-06-14 09:50 Rev.: 50496

Silence a warning.

1 lines of code changed in 1 file:

jsutherland 2013-06-14 09:47 Rev.: 50495

- for expressions that are ready for GPU execution, advertise this fact in their constructor. Note that this means that we must start to be very careful about putting anything in an evaluate() method that may break this!

- more cleanup.

686 lines of code changed in 66 files:

jsutherland 2013-06-13 17:04 Rev.: 50494

Revert changes to PrimVar. It was occasionally causing diffs (not consistently though) on only a single regression test. Very strange.

9 lines of code changed in 1 file:

jsutherland 2013-06-13 16:53 Rev.: 50493

This one is a bit sketchy because of a previously initialized value that is now not initialized any more. This could potentially cause some issues, but everything passes on my mac laptop...

15 lines of code changed in 1 file:

jsutherland 2013-06-13 16:53 Rev.: 50492

Inline Dilatation.

11 lines of code changed in 2 files:

jsutherland 2013-06-13 16:40 Rev.: 50491

Inlining on vorticity expression

22 lines of code changed in 2 files:

jsutherland 2013-06-13 16:40 Rev.: 50490

More minor cleanup.

24 lines of code changed in 5 files:

jsutherland 2013-06-13 16:37 Rev.: 50489

Temporary fix to get restart working again - go figure...

3 lines of code changed in 1 file:

harman 2013-06-13 16:03 Rev.: 50488

Dusting off the turbulence models.

28 lines of code changed in 4 files:

jsutherland 2013-06-13 15:24 Rev.: 50487

More aggressive inlining for 3D cases.

287 lines of code changed in 17 files:

jsutherland 2013-06-13 15:23 Rev.: 50486

Minor housekeeping.

38 lines of code changed in 4 files:

jthornoc 2013-06-13 14:39 Rev.: 50485

Finalized some details about the Arches wall implmentation and turned
it on. This will cause some Arches tests to fail.

94 lines of code changed in 3 files:

harman 2013-06-13 13:15 Rev.: 50482

Added tests for the driven lid cavity problem. Order of accuracy
tests and ups files. Everything is working and looks good -- Greg Torkelson


685 lines of code changed in 11 files:

jthornoc 2013-06-13 09:31 Rev.: 50481

These print statements needed to be surrounded by an "if" to avoid a
segfault.

12 lines of code changed in 2 files:

tsaad 2013-06-13 09:21 Rev.: 50479

Change the way we grab the stable timestep calculated by the StableDT Expression. Instead of obtaining that value through an expression dynamic_cast + a get_ function call on the expression - now use a dw->get on a perpatch variable. This is cleaner and does not break the Expression interface.

17 lines of code changed in 3 files:

jthornoc 2013-06-13 08:40 Rev.: 50478

Moved a print statement.

19 lines of code changed in 2 files:

jthornoc 2013-06-13 08:36 Rev.: 50477

Updated the scalar variance model to actually do something.
Committed some new updated input files with the latest and greatest.

94 lines of code changed in 3 files:

harman 2013-06-12 16:54 Rev.: 50476

Added abilities for writing CCVariable<double,int,Vector,Stencil7> variables

**only works in serial**

264 lines of code changed in 2 files:

ihunsaker 2013-06-12 16:39 Rev.: 50475

Added radiationVolqLabel to make RMCRT more
interchangeable with DOM.

15 lines of code changed in 2 files:

harman 2013-06-12 16:32 Rev.: 50474

Additional warning if an uninitialized variable has been found.

3 lines of code changed in 1 file:

jsutherland 2013-06-12 14:48 Rev.: 50472

Deactivate RadProps test in Wasatch until I can sort out a few issues with it.

5 lines of code changed in 1 file:

dav 2013-06-12 14:39 Rev.: 50471


M configure
M configure.ac

- Fix logic for the USE_WASATCH flag. Now if you specify it (on the
configure line), and the pre-reqs (Boost, Wasatch 3P) are not found,
an error occurs; and if you set it to 'no' (and the pre-reqs
are found) then a warning message will be displayed.

- Default BUILD_WASATCH_IN_ARCHES to 'no'.

- Removed some tabs.



61 lines of code changed in 2 files:

dav 2013-06-12 13:55 Rev.: 50470


M configure.ac
M configure

- Fix checking for exceptions (this is necessary when an LDFLAGS var (or
CFLAGS) is hard coded on the configure line). (Most of our configure
compilation commands add these automatically, but for some reason we
are manually compiling this test, so need to add these variables our
self.)

- Take care of the case where the user wants to use mpif77 (instead
of just the name of the actual compiler). Do this by assuming
mpif77 is gfortran... print out a warning message to this effect.
(Note, if this is not the case, then much more complicated (assuming
it is even possible) logic would be needed to determine the actual
compiler.)

M CCA/Components/MPMArches/sub.mk

- In some builds (when Wasatch is turned on), MPMArches is
required to link against boost... so need to add $(BOOST_LIBRARY) to
the LIBS line.

M CCA/Components/ICE/ICE.cc

- Indentation.

M Core/Exceptions/AssertionFailed.cc

- If exceptions are broken, then need to include iostream for cout.

27 lines of code changed in 6 files:

tsaad 2013-06-12 13:31 Rev.: 50469

Skip initialization of a temporary field in the stable timestep calculation when this is not needed.

4 lines of code changed in 1 file:

tsaad 2013-06-12 12:22 Rev.: 50468

Add regression test for adaptive timestepping. cleanup Wasatch.py. cleanup a few DynamicSmagorinskyCoefficient and StableTimestep expressions. Allo Warches to do BC treatment on the Wasatch turbulent viscosity.

102 lines of code changed in 7 files:

jthornoc 2013-06-12 09:21 Rev.: 50465

Radiation vars for DOM are no longer new_*.

Added some new, updated input files that will replace the exisiting RT tests.

30 lines of code changed in 4 files:

tsaad 2013-06-11 16:49 Rev.: 50463

Allow Warches to set BCs in extra cells at walls. Silence a warning in Arches MixingRxnMOdel. Re-Order the Wasatch-rhs task in Warches so that we can pass restart RT. update warches input files. Update warches RT spec to add restart.

61 lines of code changed in 4 files:

harman 2013-06-11 15:12 Rev.: 50460

Refactored how the shear stresses are computed. At the edge of the computational domain you need to
use dx/2 so the normal velocity gradients are computed correctly. This will change the results.


128 lines of code changed in 4 files:

jsutherland 2013-06-11 14:40 Rev.: 50459

Particle radiative property evaluation in Wasatch.

193 lines of code changed in 4 files:

harman 2013-06-11 14:32 Rev.: 50458

Dusting off the Rayleigh problem. Now testing in all three planes -Greg Torkelson

721 lines of code changed in 9 files:

jthornoc 2013-06-11 13:55 Rev.: 50456

In a previous commit, the StABL option wasn't copied over to the new BC
class.

7 lines of code changed in 2 files:

tsaad 2013-06-11 10:51 Rev.: 50455

forgot to commit the Warches RT spec.

18 lines of code changed in 1 file:

tsaad 2013-06-11 10:41 Rev.: 50454

silence a warning in ParablicBC. Do not use getWithDefault when Dynamic model is used. Update a few things in the Warches RT.

8 lines of code changed in 2 files:

harman 2013-06-10 16:01 Rev.: 50452

Added new on-the-fly analysis module, plane extract.
This is designed to save instantaneous data for comparing with PIV data.
It only dumps out the directory structure, data is not being written, more to come....

Usage:
<DataAnalysis>
<Module name="planeExtract">

<material>Atmosphere</material>
<samplingFrequency> 1e10 </samplingFrequency>
<timeStart> 0.001 </timeStart>
<timeStop> 100 </timeStop>

<Variables>
<analyze label="press_CC" matl="0"/>
<analyze label="rho_CC"/>
<analyze label="temp_CC"/>
<analyze label="delP_Dilatate"/>
</Variables>

<planes>
<plane name="X_plane">
<startingPt> [0.0, 0.5, 0] </startingPt>
<endingPt> [1.0, 0.5, 0] </endingPt>
</plane>
<plane name="Y_plane">
<startingPt> [0.5, 0.0, 0] </startingPt>
<endingPt> [0.5, 1.0, 0] </endingPt>
</plane>
</planes>
</Module>
</DataAnalysis>

977 lines of code changed in 6 files:

jthornoc 2013-06-10 13:58 Rev.: 50451

Added a screen warning to direct user to output file(s).

5 lines of code changed in 2 files:

tsaad 2013-06-10 13:52 Rev.: 50450

silence bigmac.

3 lines of code changed in 1 file:

jthornoc 2013-06-10 13:52 Rev.: 50449

Updated the name of the valid radiation options.

1 lines of code changed in 1 file:

jthornoc 2013-06-10 13:49 Rev.: 50448

Write information to a file rather than to screen to avoid mangled
output.

112 lines of code changed in 2 files:

tsaad 2013-06-10 13:42 Rev.: 50447

Add adaptive-stable timestepping in Wasatch based on basic stability analysis of convection-diffusion equations. The CFL max condition can be controlled with the timestep_multiplier from the input file.

294 lines of code changed in 7 files:

harman 2013-06-10 12:15 Rev.: 50446

changed epsilon to 1e-15. Previous change snuck in with another big commit.


0 lines of code changed in 2 files:

harman 2013-06-10 11:51 Rev.: 50445

removed extra cout.

0 lines of code changed in 1 file:

jsutherland 2013-06-10 11:34 Rev.: 50444

silence a warning.

1 lines of code changed in 1 file:

jsutherland 2013-06-10 11:33 Rev.: 50443

Add regression test for radprops in wasatch.

4 lines of code changed in 1 file:

jsutherland 2013-06-10 11:33 Rev.: 50442

RadProps support in Wasatch. We can now calculate grey gas radiative transport properties via table lookups.
Regression tests coming next...

284 lines of code changed in 5 files:

harman 2013-06-10 10:45 Rev.: 50441

Hardwired the svn user to be anonymous and passord to be "" when
performing either -svnDiff or -svnStat. This is a hack to get the RT
to run.

More descriptive error message if MALLOC_STATS is used.

7 lines of code changed in 1 file:

jthornoc 2013-06-10 10:23 Rev.: 50440

Fixed a bug where the default BC wasn't being set properly at handoff
boundaries. Also, throw an error if the user doesn't use a zero neumann
for the default velocity since only zero neumann is supported at this
time.

13 lines of code changed in 2 files:

tsaad 2013-06-10 08:47 Rev.: 50439

Do not use getWithDefault for the eddy viscosity so as to avoid conflict with need_applies_to. Also, grab the timestep size from the old_dw instead of setting it manually. This will remove the Uintah warning - lowering delt from 1 to max - at every timestep.

12 lines of code changed in 2 files:

harman 2013-06-10 08:22 Rev.: 50438

Fixed a memory leak

0 lines of code changed in 1 file:

harman 2013-06-09 15:11 Rev.: 50437


throw an "exception" if mpirun isn't found.

3 lines of code changed in 1 file:

harman 2013-06-09 12:19 Rev.: 50436

Update svn checkout command.

1 lines of code changed in 1 file:

jthornoc 2013-06-07 17:25 Rev.: 50435

Bugfix.

1 lines of code changed in 1 file:

jthornoc 2013-06-07 16:54 Rev.: 50434

Forgot to multiply the sign.

3 lines of code changed in 1 file:

jthornoc 2013-06-07 16:45 Rev.: 50433

Adding an initialization function for the StABL.

147 lines of code changed in 2 files:

tsaad 2013-06-07 13:10 Rev.: 50432

remove a variable that was declared twice and make it const so that it can't be redeclared.

3 lines of code changed in 1 file:

harman 2013-06-07 12:28 Rev.: 50431

Removed the last remnants of the "addMaterial" code. It hasn't been used for years.

7 lines of code changed in 22 files:

tsaad 2013-06-07 08:14 Rev.: 50430

require hypre solver ONLY when pressure solve is needed. this will fix the failing RT test for Wasatch.

2 lines of code changed in 1 file:

harman 2013-06-07 07:43 Rev.: 50428

Initialize the wall shear stress model

1 lines of code changed in 1 file:

jsutherland 2013-06-06 16:55 Rev.: 50427

- reinstate a piece of a constructor that had previously been commented out due to memory issues.
- minor changes in Properties.cc

10 lines of code changed in 2 files:

harman 2013-06-06 16:39 Rev.: 50426

removed scheduleInitializeAddedMaterial()
- It hasn't been used in 5+ years.

2 lines of code changed in 16 files:

harman 2013-06-06 14:35 Rev.: 50425

Now creating a wallShearStressModel for each ice matl.
-pruned #includes


40 lines of code changed in 3 files:

jthornoc 2013-06-06 14:06 Rev.: 50424

Added a missing requires for temperature when using the RadProp
calculator.

4 lines of code changed in 1 file:

tsaad 2013-06-06 14:03 Rev.: 50423

remove some leftover commented code from my recent commit. Also reactivate check for Hypre solver since Wasatch works only with Hypre at the moment.

7 lines of code changed in 1 file:

jthornoc 2013-06-06 13:05 Rev.: 50422

Adding the options for the stabilized atmospheric boundary layer BC for
momentum.

202 lines of code changed in 2 files:

jthornoc 2013-06-06 13:05 Rev.: 50421

Adding a constant property model to avoid using ColdFlow with two
streams of the same composition. Useful for debugging.

505 lines of code changed in 6 files:

tsaad 2013-06-06 13:02 Rev.: 50419

repair an unused variable with Warches. change the interface of how we check for extracells and periodicity in both Wasatch and Warches.

80 lines of code changed in 3 files:

tsaad 2013-06-06 11:56 Rev.: 50416

Add local regression tests for Warches. We can't add nightly tests for Warches because it is not a component. We will most likely have to track Warches RT on a local buildbot. Todd will also look into getting a Warches build on the RT machine. Thanks Todd.

125 lines of code changed in 1 file:

tsaad 2013-06-06 10:29 Rev.: 50415

remove an obsolete function argument from OldVariable. Repair name of some Warches tests.

3 lines of code changed in 3 files:

jsutherland 2013-06-06 09:32 Rev.: 50414

Update uintah configure due to recent major changes to SpatialOps.

3 lines of code changed in 2 files:

tsaad 2013-06-06 09:19 Rev.: 50413

repair bug in OldVariable that has to do with locking the fields that are used to construct old variables. This will nicely revert my related commit yesterday.

2 lines of code changed in 3 files:

jas 2013-06-05 18:48 Rev.: 50412

Remove '.' to test svn commit.

1 lines of code changed in 1 file:

jas 2013-06-05 18:31 Rev.: 50411

Add a period to test svn checkin.

1 lines of code changed in 1 file:

harman 2013-06-05 15:39 Rev.: 50409

removed all calls to printData()

36 lines of code changed in 7 files:

dav 2013-06-05 14:11 Rev.: 50408

Blank line - still testing svn checkin/out.

0 lines of code changed in 2 files:

dav 2013-06-05 14:07 Rev.: 50407

Removed a blank line to test committing files using newest gforge.

0 lines of code changed in 1 file:

tsaad 2013-06-05 14:02 Rev.: 50406

simplify the Turbulence specification.

2 lines of code changed in 1 file:

dav 2013-06-05 13:54 Rev.: 50405

Added blank line to test committing files using newest gforge.

1 lines of code changed in 1 file:

jsutherland 2013-06-05 11:36 Rev.: 50404

Change approach to get expressions in TaskInterface to accommodate upcoming commit to ExprLIb.

9 lines of code changed in 1 file:

tsaad 2013-06-05 11:11 Rev.: 50403

make volume fractions persistent on the initialization graph.

13 lines of code changed in 3 files:

tsaad 2013-06-04 17:46 Rev.: 50402

get Warches to run Smagorinsky and WALE turbulence models. This is another leftover from the age of stresses. Now, since these models require the strain tensor components, the latter should be built and registered.

52 lines of code changed in 2 files:

tsaad 2013-06-04 17:22 Rev.: 50401

remove a tag for viscosity leftover from the age of stress.

5 lines of code changed in 1 file:

jthornoc 2013-06-04 15:17 Rev.: 50398

Removing prefill option, which has been replaced by the
<initialization> option in the momentum solver.

This will break the mpmpipe test and require a GS update.

0 lines of code changed in 3 files:

tsaad 2013-06-03 14:48 Rev.: 50393

This is an important commit in the HypreSolver. Allow Hypre to skip filling the coefficient matrix and calling hypreMatrixAssemble at every timestep. This can be controlled with setupFrequency. Based on timings with some Wasatch tests, solver time was reduced by 30%. If your coefficient matrix is constant, then by all means you should use setupFrequency=0. These benefits fall on top of the existing benefits gained from changing the setupFrequency.

94 lines of code changed in 2 files:

tsaad 2013-06-03 14:01 Rev.: 50392

revert one of Jeremy's changes in his recent commit. This has to do with the sequential parsing for the turbulent inlet data and not skipping any line.

3 lines of code changed in 1 file:

tsaad 2013-06-03 14:01 Rev.: 50391

Fix varlabel creation problem on Wasatch restarts. Since Wasatch now adopts extracells exclusively, there's no need for BoundaryLayer cells. This essentially reverts commit r48793.

4 lines of code changed in 2 files:

harman 2013-06-03 13:35 Rev.: 50390

ComputeTiles()
- Increased tileHigh by (1,1,1). We must use inclusive loops in the tile loops otherwise regions
of space aren't searched for refinement flags.

- Added bulletproofing when assertions are turned on. Throw an exception if cells in a patch
are not searched for a refinement flags.

44 lines of code changed in 1 file:

harman 2013-06-03 12:43 Rev.: 50388

Cosmetic changes:
- removed tabs
- added dividing lines
- added vertical and horzontal spaces

131 lines of code changed in 2 files:

jthornoc 2013-06-03 11:30 Rev.: 50385

Clean out some warnings.

8 lines of code changed in 5 files:

jthornoc 2013-06-03 10:59 Rev.: 50384

Heat loss bounds are now automatically set to the table grid bounds
rather than letting the users specify them.

49 lines of code changed in 6 files:

tsaad 2013-06-03 10:06 Rev.: 50383

fix typo in two ICE warnings.

2 lines of code changed in 2 files:

jsutherland 2013-06-01 16:49 Rev.: 50382

Add a few more diagnostic output messages when WASATCH_TASK_FIELD_DIAGNOSTICS is on.

6 lines of code changed in 1 file:

May 2013 »

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