May 2009 Commit Log

Number of Commits:
71
Number of Active Developers:
11
ffjhl 2009-05-30 14:29 Rev.: 44382

1. Added diagnostic output when negative jacobian of deformation
gradient occurs.
2. Per Jim's 2005 modification of ElasticPlastic.cc, reset deformation
gradient of failed particles to previous value to prevent further
straining of these particles.

16 lines of code changed in 1 file:

ffjhl 2009-05-30 01:41 Rev.: 44381

Using the RMB version of polar decomposition. Note that modifications
for the implicit version are not done yet.

6 lines of code changed in 1 file:

jas 2009-05-29 17:10 Rev.: 44379

Script to update the gold standards from the TestData directory generated
from the regression_tester script.

33 lines of code changed in 1 file:

ffjhl 2009-05-29 16:39 Rev.: 44378

1. Added diagnostic output when negative jacobian of deformation
gradient occurs.
2. Per Jim's 2005 modification of ElasticPlastic.cc, reset deformation
gradient of failed particles to previous value to prevent further
straining of these particles.

14 lines of code changed in 1 file:

jthornoc 2009-05-29 14:13 Rev.: 44376

Commented out a variable that was needed for a kludge.

3 lines of code changed in 1 file:

harman 2009-05-29 12:51 Rev.: 44375

Fixed memory leak.

0 lines of code changed in 2 files:

harman 2009-05-28 12:14 Rev.: 44373

The user can now specifiy a variable with a material index beside the
default material. Example usage:

<material>Atmosphere</material>
<Variables>
<analyze label="press_CC" matl="0"/>
<analyze label="rho_CC"/>
<analyze label="temp_CC"/>
<analyze label="vel_CC" matl="1"/>
</Variables>

63 lines of code changed in 3 files:

jthornoc 2009-05-27 16:08 Rev.: 44371

Reverting to old, somewhat working version of DQMOM.*

51 lines of code changed in 2 files:

jas 2009-05-26 20:24 Rev.: 44361

Move member template function for computeBCs to be an inline function so it
will compile in optimized mode.

5 lines of code changed in 2 files:

jthornoc 2009-05-26 17:56 Rev.: 44360

1) Changed dqmomEqn to use generic BC's
2) Fixed RK averaging
3) Added clipping mechanism to CCscalar
4) Added initial value mechanism to ccscalar
5) DQMOMinit is now setting the domain to initValue (not boundary).
6) Added a hack for reacting coal. It is commented out.
7) Why do we have a dummyT in Kobayashi model? Now using tempINLabel instead.

218 lines of code changed in 12 files:

qymeng 2009-05-26 16:04 Rev.: 44359

Fixed a memory corruption bug.

23 lines of code changed in 1 file:

guilkey 2009-05-26 12:20 Rev.: 44358

Use an evidently better algorithm for the polar decomposition. This gets rid ofmany, but not all, of the negative Jacobian errors that we've been seeing.

4 lines of code changed in 1 file:

guilkey 2009-05-21 15:25 Rev.: 44354

Change the convergence criteria for the polarRotationRMB code.

0 lines of code changed in 2 files:

harman 2009-05-21 13:57 Rev.: 44353

removed unused varLabels

1 lines of code changed in 2 files:

harman 2009-05-21 09:32 Rev.: 44352

changed d_numAxial -1 -> d_numAxial in the loop over particles. This allows
user to have 1 particle in the axial direction

0 lines of code changed in 2 files:

qymeng 2009-05-20 20:23 Rev.: 44349

Added synchronized task block to avoid dead lock with dynamic task scheduling.
Reduction task will only run if it is the last task in its task block.
More efficient way to clean foreign vars under same label.



48 lines of code changed in 6 files:

sshankar 2009-05-20 19:37 Rev.: 44347

Initialized empty matrices with DBL_MIN

1 lines of code changed in 1 file:

sshankar 2009-05-20 19:24 Rev.: 44346

Initialized some variables for particles

20 lines of code changed in 3 files:

jas 2009-05-19 13:32 Rev.: 44343

Build documentation prior to running the regression tests.

9 lines of code changed in 1 file:

jas 2009-05-19 11:39 Rev.: 44342

Remove the -mem option from the regression_test.

Use the 64 bit and 32 bit testing version of Debian for compilation and
regression_testing.


117 lines of code changed in 1 file:

jthornoc 2009-05-18 17:07 Rev.: 44340

Fix for mpmarches to use the new scalar efficiency code.

52 lines of code changed in 3 files:

jas 2009-05-18 16:35 Rev.: 44335

Copy pdf files from various sub-directories.

2 lines of code changed in 1 file:

jthornoc 2009-05-18 15:32 Rev.: 44329

Removing a debug print statement.

0 lines of code changed in 1 file:

jas 2009-05-18 14:40 Rev.: 44328

Shell script to build the documentation and post it to the uintah website.

16 lines of code changed in 1 file:

jthornoc 2009-05-18 14:27 Rev.: 44327

Added a new and improved method for computing scalar efficiency. No more hard coding required!

At this commit, I have verified that the co2 efficiency using the old, dumb way produces the same values of the new method.

Further verificaiton testing and removing the old weeds is needed.

200 lines of code changed in 2 files:

jthornoc 2009-05-14 16:43 Rev.: 44324

Added soot factor for Dan.

7 lines of code changed in 2 files:

charlesreid 2009-05-13 12:13 Rev.: 44320

Creating and implementing a copy constructor for the LU class

16 lines of code changed in 3 files:

charlesreid 2009-05-13 11:46 Rev.: 44319

- Adding AX-B residual portion to DQMOM class
- Fixing some things that give compiler errors (in KobayashiSarofimDevol, DQMOMEqnFactory, and DQMOMEqn classes)

113 lines of code changed in 7 files:

charlesreid 2009-05-13 11:21 Rev.: 44318

Fixing a bracket thing

0 lines of code changed in 1 file:

charlesreid 2009-05-13 11:19 Rev.: 44317

Changing cout to proc0cout for DQMOM and Arches classes

74 lines of code changed in 2 files:

harman 2009-05-13 11:15 Rev.: 44316

replace only lines that match the xml tag. Previously, lines with xml_tag that
partially matched were replaced.

3 lines of code changed in 1 file:

jas 2009-05-13 11:03 Rev.: 44315

Add c includes.

11 lines of code changed in 14 files:

luitjens 2009-05-13 10:16 Rev.: 44313

Removed the call to isSimilar from the tiled regridder. Since the tiled regridder creates patches in predetermined locations the same functionality can be achieved using Grid::operator==() but with much less cost. It may be worth parallelizing this operation directly in the tiled regridder.

The call to isSimilar() becomes expensive with large numbers of patches. This could be parallelized to reduce the cost but it is now only used in the BNR regridder which is superseeded by the tiled regridder.

Added warning messages when using the BNRRegridder and the Hierarchical regridder. These messages tell the user to use the tiled regridder which has much better performance characteristics.

10 lines of code changed in 4 files:

sshankar 2009-05-12 16:39

Added some changes to vector and tensor reading code

16 lines of code changed in 2 files:

harman 2009-05-12 14:10 Rev.: 44307

added restartInitialize task.
- Variables that normally are set during the initialization task should be set
here on a restart.

17 lines of code changed in 2 files:

harman 2009-05-12 14:08 Rev.: 44306

outputProblemSpec()
- output the number of particles on each load surface

when object is created
- read in the number of particles on each surface _if_ it is a restart.


0 lines of code changed in 4 files:

harman 2009-05-11 12:45 Rev.: 44296

BC_bulletproofing()
- setting the boundary condition for Specific Volume is no longer optional.

1 lines of code changed in 1 file:

guilkey 2009-05-10 22:29 Rev.: 44294

Add pressure stabilization to this model as well.

47 lines of code changed in 1 file:

sshankar 2009-05-08 17:08

Updated code for the particle/ material issue and also added particle position as a variable

68 lines of code changed in 3 files:

dav 2009-05-08 15:12 Rev.: 44291

Add some documentation. :)

0 lines of code changed in 2 files:

guilkey 2009-05-08 14:08 Rev.: 44290

A few more pows.

8 lines of code changed in 2 files:

guilkey 2009-05-08 13:57 Rev.: 44289

Replace the * 1/cbrt with /cbrt.

1 lines of code changed in 1 file:

guilkey 2009-05-08 13:56 Rev.: 44288

Free some more POWs.

7 lines of code changed in 2 files:

guilkey 2009-05-08 13:47 Rev.: 44287

Replace the use of pow(x,-1./3.) with 1/cbrt(x) for efficiency.

4 lines of code changed in 1 file:

harman 2009-05-08 13:07 Rev.: 44286

SerialMPM.cc
Global
- added several printSchedule & printTask
outputProblemSpec()
- added loop over each mpmPhysicalBC and call the outputProblemSpec for that
BC.

PressureBC.cc
Filled in outputProblemSpec.

*Restarts still not working with PressureBCs

32 lines of code changed in 2 files:

sshankar 2009-05-08 12:27

Added changes for handling partilces, existing only on some materials

255 lines of code changed in 6 files:

guilkey 2009-05-08 10:51 Rev.: 44283

THIS should fix the buildbot/RT.

1 lines of code changed in 1 file:

guilkey 2009-05-07 23:07 Rev.: 44281

If this fixes the buildbot, I'll be even more puzzled...

4 lines of code changed in 1 file:

guilkey 2009-05-07 17:26 Rev.: 44279

Adding an option to do a pressure stabilization scheme. This results in
smoother stresses at the subgrid level. This is currently only available in
CompNeoHook and HypoElastic.

115 lines of code changed in 7 files:

harman 2009-05-07 10:28 Rev.: 44275

Added bullet proofing. If any portion of the geometry object exceeds the
computational domain then warn the user. The surface area isn't truncated when
a part of the object is outside the domain.

This code could probably be moved into MPMPhysicalBC.h

65 lines of code changed in 12 files:

harman 2009-05-07 10:04 Rev.: 44273

CylinderGeometryPiece.cc: getBoundingBox()
- using a different method to compute the bounding box.
The box now has a tighter fit.

ImpMPM.cc SerialMPM.cc MPMPhysicalBCFactory.*
- now passing a grid into the physical BCs

PressureBC.*
- Warn the user if any portion of specified geometry object lies outside
the computational domain.

61 lines of code changed in 10 files:

luitjens 2009-05-06 10:56 Rev.: 44272

Added alignment bulletproofing.

10 lines of code changed in 1 file:

jthornoc 2009-05-05 17:44 Rev.: 44271

Added a sign check for now on the devol. rate.
Fixed a sign error in the eta source term.

11 lines of code changed in 2 files:

jthornoc 2009-05-05 16:48 Rev.: 44270

Added initialization for special variables in the coal models.

137 lines of code changed in 6 files:

jthornoc 2009-05-05 15:42 Rev.: 44269

1) Added a source term for the coal gas for the eta mixture fraction.
2) Added calculation of the source term in the Kobayashi model.
3) Put a discretization class in EqnBase.
4) Cleaned up some header files.
5) Moved templated functions into header file for Discretization_new
6) Got the dirichlet scalar boundary condition stuff up and running for BoundaryCond_new
7) Added scalar transport equations "sched_eval" to time step algorithm.
8) Added variable density update to ExplicitTimeInt.
9) Some tidying up and variable initialization in Arches.cc

1678 lines of code changed in 23 files:

jas 2009-05-04 21:19 Rev.: 44263

Add Arches/MCRT to the exclude directories list.

Change where the tar ball is made.

12 lines of code changed in 2 files:

jas 2009-05-04 20:55 Rev.: 44262

Add ICE/{CodeAttic,PressureSolve} to directories not included in tarball.

Run the runLatex script and change the location of where the tarball is created.

10 lines of code changed in 2 files:

jas 2009-05-04 20:55 Rev.: 44261

Remove reference to spatial ops.

0 lines of code changed in 1 file:

jas 2009-05-04 20:55 Rev.: 44260

Remove references to spatial ops.

0 lines of code changed in 1 file:

jas 2009-05-04 20:55 Rev.: 44259

Remove functions related to spatial ops materials.

2 lines of code changed in 2 files:

jas 2009-05-04 20:55 Rev.: 44258

Remove SpatialOps from SimulationState in the *.release files.

1684 lines of code changed in 4 files:

jas 2009-05-04 20:55 Rev.: 44257

Add Core/Grid to the list of directories that have *.orig *.release files.

3 lines of code changed in 1 file:

jas 2009-05-04 20:54 Rev.: 44256

Do not include version control directories in tar archive creation.

1 lines of code changed in 1 file:

jas 2009-05-04 20:54 Rev.: 44255

Scripts to create a release tar ball.

42 lines of code changed in 2 files:

jas 2009-05-04 20:43 Rev.: 44254

Pull out the SpatialOps and RMCRT for the release files. The *.orig files
have the SpatialOps and RMCRT reflect what is in the svn repository.

8747 lines of code changed in 12 files:

jeff788 2009-05-04 16:30 Rev.: 44250

modified the prescribed deformation routine, and fixed the line-break issue

94 lines of code changed in 3 files:

guilkey 2009-05-04 15:09 Rev.: 44249

Undoing Jeff's commits until he gets the crazy linefeeds under control.

559 lines of code changed in 3 files:

jeff788 2009-05-04 14:53 Rev.: 44248

modified the prescribed deformation routine

627 lines of code changed in 3 files:

luitjens 2009-05-04 14:42 Rev.: 44247

Only call mpi all gather if we are running in parallel.

8 lines of code changed in 1 file:

jas 2009-05-01 19:08 Rev.: 44239

Remove reference to sci filesystem and inferno.

7 lines of code changed in 1 file:

jas 2009-05-01 18:52 Rev.: 44238

Turn on MPI when using -all for models, ice_amr, and arches.

Show complete compare_uda command when comparing checkpoints.


5 lines of code changed in 1 file:

April 2009 »

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