August 2015 Commit Log

Number of Commits:
77
Number of Active Developers:
12
harman 2015-08-31 15:18 Rev.: 53882

Explicity state the class the enums belong to.

Moved logic statements upstream of the PossiblyDynamicallyReallocate() call. Before the logic was
embedded inside of the call, hard to follow.

29 lines of code changed in 2 files:

harman 2015-08-31 15:13 Rev.: 53881

- Added comments
- more descriptive debugging output.


14 lines of code changed in 1 file:

awabboud 2015-08-31 14:50 Rev.: 53880

Add an extra_src tag for scalar eqns to use any arbitrary variable instead of SourceTermFactory ones

0 lines of code changed in 4 files:

awabboud 2015-08-28 15:54 Rev.: 53878

Fix another radition file for CQMOM

10 lines of code changed in 1 file:

awabboud 2015-08-28 14:25 Rev.: 53876

Update radiation property to work with CQMOM

38 lines of code changed in 1 file:

u0407585 2015-08-28 13:17 Rev.: 53875

Updated to ParticleTools instead of ParticleHelper.

8 lines of code changed in 1 file:

u0407585 2015-08-28 13:06 Rev.: 53874

Added maximum temperature to dqmom internal coordinates.

348 lines of code changed in 4 files:

awabboud 2015-08-28 11:46 Rev.: 53872

Change Arches ParticleHelper to ParticleTools to reduce naming conflicts

347 lines of code changed in 28 files:

jthornoc 2015-08-28 11:25 Rev.: 53871

Remove a debug condition that snuck in a commit.

5 lines of code changed in 1 file:

jthornoc 2015-08-27 23:58 Rev.: 53869

Fix ordering.

1 lines of code changed in 1 file:

awabboud 2015-08-27 16:51 Rev.: 53868

Fix ParticleHelper for CQMOM particles

0 lines of code changed in 1 file:

jthornoc 2015-08-27 16:36 Rev.: 53867

Remove some cruft.
Also, start re-abstracting the non-linear solver.

78 lines of code changed in 3 files:

jthornoc 2015-08-27 16:36 Rev.: 53866

Should have checked for the type before trying to insert the name.

8 lines of code changed in 1 file:

jthornoc 2015-08-27 16:36 Rev.: 53865

Move sharedState to the factories after they have been instantiated.
Provide base class task organization for the factories.

63 lines of code changed in 4 files:

jthornoc 2015-08-27 16:36 Rev.: 53864

Warning.

72 lines of code changed in 5 files:

jthornoc 2015-08-27 16:36 Rev.: 53863

Use the smart pointer.

8 lines of code changed in 5 files:

jthornoc 2015-08-27 16:36 Rev.: 53862

Store reference.

40 lines of code changed in 5 files:

awabboud 2015-08-26 16:56 Rev.: 53861

Change coal temperature to work with varaible particle sizes when needed

53 lines of code changed in 3 files:

awabboud 2015-08-26 15:07 Rev.: 53860

Change coal density model to work with variable particle sizes when needed

82 lines of code changed in 4 files:

jthornoc 2015-08-26 11:36 Rev.: 53859

Add a new property model task subset.

272 lines of code changed in 3 files:

awabboud 2015-08-26 10:31 Rev.: 53858

Actually add deposition test to RT

3 lines of code changed in 1 file:

jthornoc 2015-08-25 14:24 Rev.: 53856

Remove shared state when not used in these models.

160 lines of code changed in 8 files:

u0407585 2015-08-25 11:15 Rev.: 53855

removed restart initialization because it was causing restarts to fail.

0 lines of code changed in 1 file:

harman 2015-08-25 09:20 Rev.: 53854

formatting:
added {}
added vertical and white spaces
alignment.
added dividers

93 lines of code changed in 3 files:

harman 2015-08-24 17:23 Rev.: 53853

Formatting:
- alignment
- added vertical and white space.

68 lines of code changed in 6 files:

harman 2015-08-24 13:49 Rev.: 53852

formatting:
- added dividers
- added {}
- added vertical and horizontal spaces.

183 lines of code changed in 4 files:

jthornoc 2015-08-19 21:33 Rev.: 53845

Fix density predictor bug with variable allocation.
Provide warnings when MODIFIES is used with ghosts (and subsequently set
nGhost = 0).

65 lines of code changed in 5 files:

awabboud 2015-08-19 16:52 Rev.: 53844

Add in varaible to turn on wall deposition of particles in CQMOM

0 lines of code changed in 4 files:

derekhar 2015-08-19 12:05 Rev.: 53843

Extended LHC ray-direction sampling to include the multi-level ray tracing algorithm.

13 lines of code changed in 1 file:

derekhar 2015-08-19 11:11 Rev.: 53842

Updated comments to be slightly more accurate.

1 lines of code changed in 1 file:

u0407585 2015-08-18 15:46 Rev.: 53838

Added regression test which tests the new CO property model on a Westbrooke Dryer combustion case.

3 lines of code changed in 1 file:

u0407585 2015-08-18 13:29 Rev.: 53837

Added CO model, which predicts equilibrium values at high temperatures and has global rate for low temperatures. Should not effect regression tests.

548 lines of code changed in 6 files:

guilkey 2015-08-18 13:19 Rev.: 53836

Change CellNAPID from a short int to an int. This will likely anger the RT.

24 lines of code changed in 15 files:

tsaad 2015-08-18 10:46 Rev.: 53834

fix conceptual bug in the 1D MMS mixture fraction source term. One must use the appropriate time (t + dt) for the source term in the rhs of (rho*f)_at_(n+2)

112 lines of code changed in 4 files:

harman 2015-08-17 16:52 Rev.: 53833

sched_RestartInitialize()
- fixed conditional logic to only schedule if the variables exist in the new_dw
and it's an arches_level

The key, that I missed the first time, is that the mpi rank must own the patch for the
exists() query.


36 lines of code changed in 1 file:

dav 2015-08-17 12:21 Rev.: 53828

Add white space to make it easier to read.

0 lines of code changed in 2 files:

awabboud 2015-08-17 11:21 Rev.: 53827

Change the parsing for the particle models to be more consistent

9 lines of code changed in 2 files:

harman 2015-08-14 15:25 Rev.: 53824

sched_sigmaT4()
- fixed logic for requiring d_sigmaT4 from the OldDW. Only require it _if_ the
oldDW exists. The oldDW always exists except when schedule_RestartInitialize() is called.

4 lines of code changed in 1 file:

dav 2015-08-14 13:40 Rev.: 53823


A few minor cosmetic updates.

M StandAlone/sus.cc

- Cosmetic move of #ifdef to make it easier to "see".

M configVars.mk.in

- When "quietly" compiling CUDA files, let the user know it is a CUDA file.

M configure
M configure.ac

- Use standard indention.
- Fix verbage on math lib check.

11 lines of code changed in 4 files:

jsutherland 2015-08-13 18:04 Rev.: 53821

Updates to use the new apply_pointwise interface in SpatialOps. This will eliminate the bug that could otherwise show up when there are multiple expressions hitting this simultaneously.

78 lines of code changed in 1 file:

ahumphrey 2015-08-13 17:20 Rev.: 53819

Cleanup in Switcher component - for merge with and usage in arl_dev branch.

0 lines of code changed in 4 files:

ajosephson 2015-08-13 15:14 Rev.: 53817

Cleaning up some code to remove unnessary variables. Also addressing some warnings that appeared at time of compilation.

40 lines of code changed in 8 files:

dav 2015-08-13 14:09 Rev.: 53816

Clean up permission setting. Add another file to ignore list for RadProps dir.

8 lines of code changed in 7 files:

harman 2015-08-13 11:04 Rev.: 53815

Arches/SourceTerms/*
- added sched_RestartInitialize() If you're restarting from a Discrete Ord. uda
you must initialize sigmaT4 & RMCRTBoundaryFlux variables

- Added task (DBLsToStencil) and scheduling. Needed to initialize RMCRTboundaryFlux

- removed EOL spaces

Models/Radiation/RMCRT/*
- sched_sigmaT4()
Added logic to restrict when to require d_sigmaT4Label. There are multiple "corner cases"
that need to be accounted for and they are not obvious.

- comment out all filter VarLabels & tasks, they're not used.
- moved d_boundFluxLabel and d_radiationVolqLabel -> RMCRTCommon. Needed
by Arches when restarting.
- updated ToDo list
- removed EOL spaces

This commit will change the number checkpoint variables in some RT tests


336 lines of code changed in 6 files:

jthornoc 2015-08-12 16:04 Rev.: 53814

Allowing extra specification in the get variable functionality so that
one may grab the same variable from two different DWs as const.

142 lines of code changed in 2 files:

jthornoc 2015-08-12 16:03 Rev.: 53813

Reorder for clarity.

0 lines of code changed in 2 files:

harman 2015-08-12 14:23 Rev.: 53810

Added
sched_RestartInitialize()
machinery to the source terms. It's not being utilized in this commit.

Arches::scheduleRestartInitialize:
calling sched_RestartInitialize()

18 lines of code changed in 5 files:

dav 2015-08-12 13:58 Rev.: 53809

Fix permission updating. Change default installation dir for Titan

9 lines of code changed in 5 files:

harman 2015-08-12 13:22 Rev.: 53806

Added method:
bool isRestartInitTimestep()

A component can query the scheduler and determine if it is the initial timestep after
a restart.


AMRSimulationController: run()
- moved

bool first = true;
if (d_restarting) {
d_scheduler->setRestartInitTimestep(first);
}

upstream, before doInitialTimestep().


11 lines of code changed in 5 files:

tsaad 2015-08-12 12:08 Rev.: 53805

1. Fix a few bugs in the Hypre solver interface for asymmetric matrices
2. Allow components to specify whether a matrix is symmetric or not. This should done via, for example, sParams->setSymmetric(true). To check for symmetry use getSymmetric()

0 lines of code changed in 6 files:

jthornoc 2015-08-10 17:18 Rev.: 53804

Turn on this test for All systems in the LOCAL_TESTS.

1 lines of code changed in 1 file:

jthornoc 2015-08-10 16:19 Rev.: 53803

Warning.

0 lines of code changed in 1 file:

jthornoc 2015-08-10 16:19 Rev.: 53802

Warnings.

173 lines of code changed in 2 files:

jthornoc 2015-08-10 16:19 Rev.: 53801

Cleaning up warnings.

520 lines of code changed in 5 files:

jthornoc 2015-08-10 16:19 Rev.: 53800

Clean up unused information.

0 lines of code changed in 1 file:

jthornoc 2015-08-10 16:19 Rev.: 53799

Fix a problem with the variable registry. The values are no longer being
altered after it is passed to the task.

25 lines of code changed in 3 files:

jthornoc 2015-08-10 16:18 Rev.: 53798

Remove more _new functions.

333 lines of code changed in 42 files:

jthornoc 2015-08-10 16:18 Rev.: 53797

Remove the _new tags from the new functions.

12 lines of code changed in 2 files:

jthornoc 2015-08-10 16:18 Rev.: 53796

Minor front-end change, major back-end change to the Arches Task Interface (ATI).
* Remove the ATI variable type enums in favor of Uintah type descriptions and the FieldAdaptor mapping for better generality.
* Rather than resolving all variables in the task call-back function, resolve the labels when they are retrieved. This is now done in the FieldContainer.h

This should reduce the complexity of the field mapping behind the scenes for easier readability and maintainability.

2600 lines of code changed in 61 files:

jthornoc 2015-08-10 16:18 Rev.: 53795

Using Wasatch FieldAdaptor to simplify the logic in retrieving and
wrapping Uintah fields in the Arches task interface.

1055 lines of code changed in 4 files:

jthornoc 2015-08-10 16:18 Rev.: 53794

Adding header file.

46 lines of code changed in 1 file:

jthornoc 2015-08-10 16:18 Rev.: 53793

* computeBCArea__NEW -> computeBCArea
* Moved the momentum helpers into a separate header…hoping it is useful elsewhere
* Atom editor performed some beautification by removing extra spaces at the ends of lines.
* Re-tooling of variable_stats model including:
1) This class is no longer templated and as a result only works on cell-centered variable (everything but velocity). The templating seemed like an unnecessary complication.

2) As a result of 1), you don’t specify the variable type any more as part of the spec (was an optional input before) 

3) The result of the <flux_variable> spec is the running sum of the flux variable on the FACES of the cells in each coordinate direction. The running sums  were previously located in the cell center. This was done to enable exact mass/energy/scalar etc. balances. 

4) The local variable creation was moved out of the problemSetup and into the automagic ArchesTaskInterface functionality.

985 lines of code changed in 6 files:

jthornoc 2015-08-10 16:18 Rev.: 53792

rm a __NEW and beautify.

3017 lines of code changed in 3 files:

jthornoc 2015-08-10 16:18 Rev.: 53791

Beautify.

468 lines of code changed in 1 file:

u0407585 2015-08-10 14:57 Rev.: 53790

Fixed initialization issue. Now devol and char models will be initialized. This will break the regression test: coal_channal_FOWY, because we are now saving source terms at time-step 0, where before they weren't saved.

269 lines of code changed in 17 files:

jsutherland 2015-08-07 10:58 Rev.: 53788

Revert "- Get the framework to compile when C++11 is turned on."

We can remove this once we switch over to C++11 entirely. But not quite yet...

152 lines of code changed in 5 files:

jsutherland 2015-08-07 10:32 Rev.: 53787

- Get the framework to compile when C++11 is turned on.
- Remove sci_algorithm.h. This must have been from prehistoric times.

4 lines of code changed in 4 files:

harman 2015-08-06 16:15 Rev.: 53786

print()
- if the "domain" is not defined then don't print it.

0 lines of code changed in 2 files:

derekhar 2015-08-06 15:38 Rev.: 53785

Fixed CharOxidation model so that information is now properly pulled from the table when needed. No need to use data Archiver to pull chemical species from table.

40 lines of code changed in 1 file:

derekhar 2015-08-06 14:48 Rev.: 53784

Fully removed DO/RMCRT specific code in the Wall-HT model. This can be done since they use the same interface of 6 CCVariables for the fluxes .

29 lines of code changed in 2 files:

derekhar 2015-08-06 13:41 Rev.: 53783

Possible fix to memory leak in wallHT model.

3 lines of code changed in 1 file:

u0407585 2015-08-06 12:27 Rev.: 53782

Several modifications for the Westbrook Dryer model. Added temperature dependence for flammability limits. Moved various user inputs to the chemistry table to avoid user error. Made model compatible with inerts in the fuel stream.

87 lines of code changed in 12 files:

derekhar 2015-08-06 11:52 Rev.: 53781

Added Latin Hyper-Cube ray direction sampling to RMCRT.

156 lines of code changed in 4 files:

derekhar 2015-08-05 10:46 Rev.: 53780

Altered WallHT model so that it will treat both radiation models the same. This is in accordance with commit 53735.

6 lines of code changed in 1 file:

jas 2015-08-03 15:49 Rev.: 53778

Namespace cleanups.

220 lines of code changed in 37 files:

guilkey 2015-08-03 13:56 Rev.: 53777

Improve the fault tolerance of the water model. Namely, delete particles
for which the deformation gradient will give non-sense answers.

0 lines of code changed in 4 files:

guilkey 2015-08-02 15:12 Rev.: 53776

Add compute for p.temperatureGradient

2 lines of code changed in 1 file:

July 2015 »

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