December 2011 Commit Log

Number of Commits:
115
Number of Active Developers:
15
jthornoc 2011-12-29 23:08 Rev.: 48059

Updating boundary condition types.

0 lines of code changed in 2 files:

tsaad 2011-12-29 16:20 Rev.: 48057

forgot to uncomment some preprocessor directives in my previous commit.

0 lines of code changed in 2 files:

tsaad 2011-12-29 15:12 Rev.: 48055

Fix wasatch task DW requirements for multistage integrators.

18 lines of code changed in 1 file:

harman 2011-12-29 14:34 Rev.: 48054

-formatting.
-added Ray Tracing task using the "data Onion" scheme.
Work in progress.

0 lines of code changed in 8 files:

sadeghirad 2011-12-29 10:48 Rev.: 48051

minor modification for Arenisca.cc

0 lines of code changed in 2 files:

tsaad 2011-12-29 08:45 Rev.: 48050

Finalize code for using Wasatch in Arches. The following changes have been made:
1. Add one way coupling between Arches fluid dynamics and Wasatch transport equations.
2. Add boundary conditions to wasatch-in-arches. All models used from Wasatch have their BCs set in Wasatch.
3. Add a Wasatch material to get things ready for MPMARCHES.
4. Wasatch in Arches now works with multipatch, multiprocessor with mpi (multipatch per processor also).
5. Multistage integrator for wasatch-arches using the Arches RK averaging interface.
6. Modify wasatch transport equations to automatically fill in the root IDs for the solution-graph-helper.
7. Add wasatch-arches input file test. This test is based on the Arches helium_1m.ups.

If you want to test Wasatch-in-Arches, there are two pieces of code in Wasatch that you must comment. This decision is based on our preference to use GhostCells instead of ExtraCells in Wasatch. When these lines of code are commented, wasatch will play well with extraCells. Please contact me or James Sutherland for additional information on what lines must be commented.

562 lines of code changed in 40 files:

jsutherland 2011-12-27 21:59 Rev.: 48048

eliminate an unused variable to silence a compiler warning

0 lines of code changed in 1 file:

jsutherland 2011-12-27 12:27 Rev.: 48047

Consolidate a bunch of duplicate code.

Note: we need rtest coverage on pressure BCs - it appears that we don't have any right now.

32 lines of code changed in 1 file:

jsutherland 2011-12-27 12:26 Rev.: 48046

minor cleanup

102 lines of code changed in 3 files:

jsutherland 2011-12-27 11:43 Rev.: 48045

silence some compiler warnings

25 lines of code changed in 1 file:

jsutherland 2011-12-27 11:05 Rev.: 48044

Simplify DW usage a bit for RK integrator.

6 lines of code changed in 1 file:

jthornoc 2011-12-23 19:57 Rev.: 48043

Allocating soot only if DORadiation model is active by the old enthalpy
solver or the new source term.

This will break some restart tests due to a change in variables in the
checkpoint.

0 lines of code changed in 2 files:

jthornoc 2011-12-23 02:58 Rev.: 48041

Initializing a couple of variables.

0 lines of code changed in 4 files:

qymeng 2011-12-21 15:33 Rev.: 48040

Output task internal thread waiting time.

30 lines of code changed in 8 files:

guilkey 2011-12-21 14:19 Rev.: 48039

Modification so the RT will run. The problem, allocateAndPutting a variable
that wasn't computed. I thought we used to issue errors or warnings about
that?

0 lines of code changed in 2 files:

ihunsaker 2011-12-21 13:21 Rev.: 48038

Added benchmark 4. Made paths to exact solutions relative.

487 lines of code changed in 4 files:

jthornoc 2011-12-21 12:25 Rev.: 48037

Minor reformatting...

4 lines of code changed in 1 file:

ihunsaker 2011-12-21 11:01 Rev.: 48035

Added exact soln for benchmark 3. Changed a variable in benchmark 2.

47 lines of code changed in 1 file:

guilkey 2011-12-20 18:15 Rev.: 48033

Add the option to apply contact in a direction that is normal to the surface
of an arbitrarily oriented rigid body.

To use, along with "rigid" or "specified" or "specified_velocity" (all
different names for the same model) include:

<normal_only>true</normal_only>

in the contact section of the input file. This flag is false by default.
When set to true, the <direction> tag will be ignored.

127 lines of code changed in 3 files:

guilkey 2011-12-20 14:13 Rev.: 48031

Tidying and a bit of code rearranging. Might help performance a wee bit,
will help readability at least as much.

0 lines of code changed in 2 files:

harman 2011-12-20 10:34 Rev.: 48030

Corrected command redirections. Python uses sh for all system commands.

0 lines of code changed in 4 files:

ihunsaker 2011-12-20 10:27 Rev.: 48029

Formatting

22 lines of code changed in 1 file:

jthornoc 2011-12-19 16:07 Rev.: 48025

Helping Tony sleep at nights:

Removing the redundant specification of the time integrator. Order is now set as:

<TimeIntegrator>
<ExplicitIntegrator order="..some string.."/>
</TimeIntegrator>

where ...some string... options (quoted items) are

foward euler = "first"
ssp rk2 = "second"
ssp rk3 = "third"

Updated script "updateUPS" to make these changes automatically for users.
Finally updated all input files and performed reformatting for consistency.

15 lines of code changed in 1 file:

jsutherland 2011-12-19 09:03 Rev.: 48023

Fix compiler error

0 lines of code changed in 2 files:

jsutherland 2011-12-17 18:06 Rev.: 48022

Refactoring expression registration & construction due to ExprLib refactor

1170 lines of code changed in 101 files:

jthornoc 2011-12-16 18:05 Rev.: 48021

Sign change needed for pressure boundary conditions due to upstream
change.
Fixed some minor formatting.
Move T-channel to MPMARCHES input file directory.

8 lines of code changed in 5 files:

ihunsaker 2011-12-16 16:48 Rev.: 48019

Changed BCs to Dirichlet in benchmark1 input file.
Ensured rays don't enter reflection loop if boundary is black.
Should not change answer or time for benchmark13pt2.
Will change time for benchmark1 and answers from previous commit
for benchmark1.

42 lines of code changed in 1 file:

sadeghirad 2011-12-16 14:03 Rev.: 48018

Added subccling into Arenisca.cc

43 lines of code changed in 1 file:

jthornoc 2011-12-15 22:32 Rev.: 48016

Compute inlet properties correctly for ColdFlow case.

Also made "use_mixing_model" parameter optional. The default is false.

14 lines of code changed in 7 files:

harman 2011-12-15 18:20 Rev.: 48015

Test to quantify error associated with coarsening abskg.

270 lines of code changed in 5 files:

ihunsaker 2011-12-15 15:56 Rev.: 48013

Modified Ray.cc to allow for interactive BCs of abskg and temperature.
Removed obsolete parameters from input files.

7 lines of code changed in 1 file:

harman 2011-12-15 15:20 Rev.: 48012

reverted back to r48003 formatting.

115 lines of code changed in 1 file:

harman 2011-12-15 12:54 Rev.: 48011

added missing ]

0 lines of code changed in 2 files:

ihunsaker 2011-12-15 12:03 Rev.: 48010

Added a few lines for quick debugging

9 lines of code changed in 1 file:

ihunsaker 2011-12-15 11:36 Rev.: 48009

Changed tabs to spaces

206 lines of code changed in 1 file:

harman 2011-12-15 10:24 Rev.: 48008

turned off RMCRT reflection case. It is generating nans.

2 lines of code changed in 1 file:

harman 2011-12-14 19:12 Rev.: 48005

RayTrace()
Include extra cells when getting sigmaT4 and abskg from the data warehouse.

7 lines of code changed in 1 file:

ihunsaker 2011-12-14 16:39 Rev.: 48003

Added benchmark_2 analytic solution.

221 lines of code changed in 1 file:

harman 2011-12-14 16:27 Rev.: 48002

added grid convergence test for the Burns and Christon benchmark

190 lines of code changed in 5 files:

sadeghirad 2011-12-14 15:24 Rev.: 48000

minor revisions for the Arenisca.cc

5 lines of code changed in 1 file:

harman 2011-12-14 15:22 Rev.: 47999

added RMCRT reflection test to the nightly & local RT.

5 lines of code changed in 1 file:

harman 2011-12-14 14:31 Rev.: 47997

RMCRT_Test::Initialization()
setBC(color & abskg)

ups: Dial in for RT test.
- increased number of timesteps
- decreased number of rays
- changed y+ y- abskg boundary condition

3 lines of code changed in 1 file:

jsutherland 2011-12-14 13:42 Rev.: 47996

Dump version information for SpatialOps and ExprLib in output.

10 lines of code changed in 1 file:

sadeghirad 2011-12-14 12:46 Rev.: 47994

removed extra files related to the simplifiedGeomodel which are not useful anymore

0 lines of code changed in 6 files:

sadeghirad 2011-12-14 12:42 Rev.: 47993

committed new version of the simplifiedGeomodel which is named Arenisca

1261 lines of code changed in 6 files:

jthornoc 2011-12-13 17:56 Rev.: 47989

Missing requires for dt label...

4 lines of code changed in 1 file:

jthornoc 2011-12-13 17:54 Rev.: 47988

Now passing a boolean to allocate on-the-fly for wasatch-ism.

20 lines of code changed in 2 files:

jthornoc 2011-12-13 17:53 Rev.: 47987

Added relax_type to the list of possible hypre parameters.

8 lines of code changed in 2 files:

jpedel 2011-12-13 17:22 Rev.: 47986

updating previous model

0 lines of code changed in 2 files:

jthornoc 2011-12-13 16:17 Rev.: 47985

Adding a task interface to timeAvePhi.
Also passing vector<string> rather than vector<const VarLabel*> for this
interface and the fe_update interface committed earlier.

100 lines of code changed in 2 files:

jpedel 2011-12-13 13:59 Rev.: 47984

Adding enthalpy model to Arches.cc

4 lines of code changed in 1 file:

jthornoc 2011-12-13 11:01 Rev.: 47983

Added a task schedule interface to the single patch FE update.

91 lines of code changed in 2 files:

harman 2011-12-13 10:29 Rev.: 47982

Added input file switch for random seeding. The default is true.

Added:
<randomSeed> false </randomSeed>
input files.

3 lines of code changed in 2 files:

jsutherland 2011-12-12 17:51 Rev.: 47981

Put hooks in place to use Extra Cells rather than Boundary Layer cells in Wasatch

136 lines of code changed in 5 files:

jpedel 2011-12-12 16:31 Rev.: 47980

Fixing the comliling problem

0 lines of code changed in 2 files:

jpedel 2011-12-12 15:57 Rev.: 47979

Particle Enthalpy Model

110 lines of code changed in 17 files:

jpedel 2011-12-12 15:51 Rev.: 47978

Adding Particle Enthalpy model for DQMOM

1118 lines of code changed in 2 files:

harman 2011-12-12 14:41 Rev.: 47977

if openmpi is used, pass in enviromental variables using:

-x MALLOC_STATS -x SCI_SIGNALMODE -np

if mvapich2 use:

-genvlist MALLOC_STATS,SCI_SIGNALMODE -np


15 lines of code changed in 1 file:

jthornoc 2011-12-09 19:22 Rev.: 47975

Added the ability to load on src terms to the pressure projection.

147 lines of code changed in 5 files:

jthornoc 2011-12-09 19:22 Rev.: 47974

Cleaned up some unused functions. Removed some empty MMS source term
calculations. Added access to <src> for the pressure solver.

14 lines of code changed in 10 files:

harman 2011-12-09 17:44 Rev.: 47972

removed getIteratorBCValueBCKind(). Now using version in
Core/Grid/BoundaryConditions/BCUtils.h

*This should not change the answers

0 lines of code changed in 4 files:

harman 2011-12-09 16:33 Rev.: 47971

Moved getIteratorBCValueBCKind() from ICE upstream so other
components can use it.

This should not change the answers

127 lines of code changed in 10 files:

harman 2011-12-09 14:47 Rev.: 47969

if (np > 1.0)
add -mpi option to sus command

1 lines of code changed in 1 file:

harman 2011-12-09 12:15 Rev.: 47968

added missing #include

1 lines of code changed in 1 file:

harman 2011-12-09 12:06 Rev.: 47967

The example component now requires the user to set boundary conditions
for the color & abskg.

User must also specify an initial condition for abskg.

The answers will change due to extracells being used, but the order of accuracy
is exactly the same.

255 lines of code changed in 4 files:

harman 2011-12-09 11:38 Rev.: 47966

updated inputfile

0 lines of code changed in 2 files:

harman 2011-12-08 17:28 Rev.: 47963

If BC is not set and that face is not periodic then throw an exception.

0 lines of code changed in 2 files:

harman 2011-12-08 16:11 Rev.: 47961

Throw an exception if the user specifies a periodic grid and boundary conditions in that direction

37 lines of code changed in 1 file:

dav 2011-12-08 13:11 Rev.: 47960

Fix linking on Mac for --enable-wasatch-in-arches.

0 lines of code changed in 4 files:

jsutherland 2011-12-08 11:42 Rev.: 47959

Changes to get wasatch compiling in arches.
It is not linking yet...

65 lines of code changed in 10 files:

harman 2011-12-08 10:34 Rev.: 47958

moved boundary condition code that would be useful to other components upstream

202 lines of code changed in 8 files:

jsutherland 2011-12-07 22:38 Rev.: 47957

More progress on fields

55 lines of code changed in 2 files:

tsaad 2011-12-07 18:03 Rev.: 47954

make changes based on Dav's recent commit to building wasatch in arches.

41 lines of code changed in 4 files:

dav 2011-12-07 16:37 Rev.: 47953

Fix typo

4 lines of code changed in 3 files:

dav 2011-12-07 16:24 Rev.: 47952

Added --enable-wasatch-in-arches flag.

60 lines of code changed in 4 files:

harman 2011-12-07 16:20 Rev.: 47951

Added 2 * pi back to initial velocity equations for Taylor-Green.

9 lines of code changed in 2 files:

dav 2011-12-07 14:29 Rev.: 47950

Don't let -L/usr/lib[64] sneak into the build line...

8 lines of code changed in 2 files:

harman 2011-12-07 12:54 Rev.: 47949

generalized RMCRT scripts to handle different benchmark cases.

97 lines of code changed in 4 files:

jas 2011-12-07 02:44 Rev.: 47947

Allow for the user to specify the location of the TestData.

0 lines of code changed in 2 files:

tsaad 2011-12-06 17:39 Rev.: 47946

BoundaryCondition relies on mmbcvelocity_fort... (Dd)

1 lines of code changed in 1 file:

tsaad 2011-12-06 17:00 Rev.: 47945

fill in more hooks for the arches-wasatch effort. Add expression placeholders for velocity field, a method to access the IOFields from wasatch, and grab the proper information needed by the taskInterface in Arches' Explicit solver.

26 lines of code changed in 2 files:

jpeterson 2011-12-06 15:21 Rev.: 47943

Added a method to get the kinetic energy of a single material in a cell centered approach.

178 lines of code changed in 8 files:

harman 2011-12-06 14:58 Rev.: 47942

Pulled 2*pi out of Taylor-Green vortex velocity initialization.
Apples to apples.

9 lines of code changed in 1 file:

jas 2011-12-05 19:09 Rev.: 47938

Fix for static linking with boost and wasatch_3p.

1 lines of code changed in 1 file:

jthornoc 2011-12-05 18:49 Rev.: 47937

Added generalized momentum initializiation. Functions for initial velocity may now be easily added. Also added the Taylor-Green vortex input file which tests this new capability.

228 lines of code changed in 6 files:

harman 2011-12-05 18:19 Rev.: 47936

now using correct 3D Taylor Green Vortex initialization.

0 lines of code changed in 2 files:

ihunsaker 2011-12-05 16:44 Rev.: 47935

Added back in Todd's changes.

204 lines of code changed in 1 file:

awabboud 2011-12-05 15:21 Rev.: 47934

small bug fix for classic tables

0 lines of code changed in 2 files:

jthornoc 2011-12-05 14:57 Rev.: 47933

Simplify by removing the switch statement in lieu of getFaceAxes.

2 lines of code changed in 1 file:

ihunsaker 2011-12-05 13:23 Rev.: 47931

Removed a constant to the outside of a loop.

243 lines of code changed in 1 file:

harman 2011-12-05 11:49 Rev.: 47930

formatting and cleaned out redundant comments.

206 lines of code changed in 1 file:

jthornoc 2011-12-04 18:13 Rev.: 47929

Missed the y,z direction for areaFraction on the last commit.
Also, treating the extra cells more explicitly.

49 lines of code changed in 1 file:

jpeterson 2011-12-04 18:08 Rev.: 47928

A new EOS for solids. No sign change in compression to tension.

283 lines of code changed in 5 files:

banerjee 2011-12-03 20:39 Rev.: 47927

More informative output when binary pressure search fails.

0 lines of code changed in 2 files:

jsutherland 2011-12-02 18:41 Rev.: 47925

preliminary work on sucking Wasatch functionality into Arches.

1233 lines of code changed in 4 files:

jsutherland 2011-12-02 18:40 Rev.: 47924

oops - fix a mistake introduced in the time task naming commit

4 lines of code changed in 1 file:

jsutherland 2011-12-02 18:40 Rev.: 47923

Implement a few new methods in Wasatch in preparation for the Arches marriage / affair.

43 lines of code changed in 2 files:

jsutherland 2011-12-02 18:40 Rev.: 47922

Eliminate space in a file name to make linux commands happy

1 lines of code changed in 1 file:

jthornoc 2011-12-02 18:18 Rev.: 47921

Fixed a bug where areaFraction values were accessed in Ghost cells when
ghost information was not present. This worked for some mysterious
reason on ember but segFaulted on Kraken.

1 lines of code changed in 1 file:

jpedel 2011-12-02 15:06 Rev.: 47918

Removing comments

0 lines of code changed in 1 file:

jpedel 2011-12-02 15:04 Rev.: 47917

Fixing particle absorption coefficient

30 lines of code changed in 3 files:

ihunsaker 2011-12-02 11:52 Rev.: 47916

Added reflections and wall emission to Ray.cc. Modified input and xml files to allow user to run benchmark_13pt2

296 lines of code changed in 4 files:

harman 2011-12-02 11:34 Rev.: 47915

get_iter_bcval_bckind()
- added delete to plug a memory leak.

3 lines of code changed in 1 file:

jsutherland 2011-12-01 19:05 Rev.: 47911

minor formatting & const changes

132 lines of code changed in 3 files:

jsutherland 2011-12-01 19:05 Rev.: 47910

Fix some explicit template instantiations

27 lines of code changed in 1 file:

harman 2011-12-01 17:41 Rev.: 47908

If the env var TEST_COMPONENTS is set, use it instead of testing all of the component
listed in the R_Tester directory. We don't want the RT trying to run gpu tests.


0 lines of code changed in 2 files:

harman 2011-12-01 17:20 Rev.: 47907

Allow a test to run if the number of mpi processes > number of cores on the machine. Alan needs this for his
4 core machine.


1 lines of code changed in 1 file:

jsutherland 2011-12-01 16:57 Rev.: 47906

Update const safety due to improvement in ExprLib interface

1 lines of code changed in 1 file:

jsutherland 2011-12-01 16:57 Rev.: 47905

Modify field window calculation interface to get field extents directly from each field

43 lines of code changed in 2 files:

jsutherland 2011-12-01 16:57 Rev.: 47904

Modify wasatch rtests a bit.

0 lines of code changed in 2 files:

harman 2011-12-01 16:50 Rev.: 47903

changed file name so the configure option

--without-petsc

will work. Thanks Dav.


124 lines of code changed in 2 files:

ahumphrey 2011-12-01 16:39 Rev.: 47902

Minor changes to PAPI instrumentation and comments.

4 lines of code changed in 3 files:

jthornoc 2011-12-01 12:30 Rev.: 47901

Applying boundary conditions on dummy initialization. This may change
the answers in the MPMTests using new scalar solver information. Only
the boundary values at the first two timesteps should be effected.

0 lines of code changed in 2 files:

jthornoc 2011-12-01 12:30 Rev.: 47900

Plugging a memory leak.

3 lines of code changed in 1 file:

harman 2011-12-01 12:07 Rev.: 47899

TreeTaskExecute()
create the task outside of the patch loop. Fixes memory leak.

4 lines of code changed in 1 file:

November 2011 »

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