March 2011 Commit Log

Number of Commits:
118
Number of Active Developers:
11
guilkey 2011-03-31 16:52 Rev.: 47033

Add pEnergy to the implicit calculations, should get the regression tests going
again.

11 lines of code changed in 1 file:

harman 2011-03-31 15:17 Rev.: 47032

Initial commit of the Zerilli-Armstrong Polymer plasticity mode.
This code is just a copy of the Zerilli-Armstrong Strain rate dependent plasticity
mode.

594 lines of code changed in 4 files:

harman 2011-03-31 14:17 Rev.: 47030

PlasticityModel.h
- replaced most of the virtual function() = 0 with virtual function (){},
so you don't have to declare empty functions in every model.cc/.h files.

ZAPlastic.cc/.h
- removed all empty virtual functions

This will not change the answers

14 lines of code changed in 3 files:

guilkey 2011-03-31 10:40 Rev.: 47028

The cut off value of J above which particles are deleted can now be specified
at run time. The default value remains 20.

3 lines of code changed in 2 files:

tsaad 2011-03-30 18:54 Rev.: 47026

Pressure solver.

218 lines of code changed in 8 files:

tsaad 2011-03-30 18:50 Rev.: 47025

Add explicit template instantiation for ZVolField

1 lines of code changed in 1 file:

guilkey 2011-03-30 17:43 Rev.: 47024

Improved the error messages a bit.

7 lines of code changed in 1 file:

harman 2011-03-30 15:24 Rev.: 47022

Turned memory checks back on.


3 lines of code changed in 1 file:

harman 2011-03-30 15:22 Rev.: 47021

Changed method for parsing the tmp file for the index of the failed test.
Previously, if there were more than 10 failed tests and you selected to replace
test 1 the parsing would also return 10,11,....


0 lines of code changed in 2 files:

guilkey 2011-03-30 13:30 Rev.: 47020

Improve an error message

4 lines of code changed in 1 file:

qymeng 2011-03-30 10:22 Rev.: 47019

Removed scheduler arg from initializeManager()

5 lines of code changed in 5 files:

qymeng 2011-03-29 14:55 Rev.: 47018

Removed scheduler arg from initializeManager()
Allow MPICH version 2 to use nthreads.

29 lines of code changed in 3 files:

jpedel 2011-03-29 11:35 Rev.: 47017

1 lines of code changed in 1 file:

jpedel 2011-03-29 11:31 Rev.: 47016

Fixing an error an the energy coupling

1 lines of code changed in 1 file:

jpedel 2011-03-29 09:15 Rev.: 47015

Reverting yield Y1 value to 0.3 to pass regression tests

1 lines of code changed in 1 file:

jas 2011-03-28 20:52 Rev.: 47014

Move the MPI_LIBRARY to an earlier link point so that the MakeDefaultAllocator
function that sets up a atexit point has already been initialized. There
were two calls to atexit one by the MPI_LIBRARY and another by the
MakeDefaultAllocator.

Thanks to Dav for figuring out a fix to the hung processes when using
--enable-sci-malloc.


2 lines of code changed in 1 file:

jas 2011-03-28 19:52 Rev.: 47013

Change the location of the MallocTrace library if the --enable-static
flag is specified.

26 lines of code changed in 2 files:

harman 2011-03-28 17:46 Rev.: 47012

order of accuracy files for the different interpolators.

344 lines of code changed in 6 files:

harman 2011-03-28 17:23 Rev.: 47011

fixed syntax error
more descriptive output

2 lines of code changed in 1 file:

harman 2011-03-28 15:59 Rev.: 47010

output file named L_inf

8 lines of code changed in 1 file:

harman 2011-03-28 14:57 Rev.: 47009

Add the current path to the overall path.

2 lines of code changed in 1 file:

harman 2011-03-28 14:46 Rev.: 47007

masterScript.pl
- redirect system calls to /dev/null to quite them

analyze_results.pl
- added more descriptive error message

Added MPM axis aligned MMS order of accuracy test.


398 lines of code changed in 8 files:

guilkey 2011-03-28 14:29 Rev.: 47006

Commenting out the computation of gNumNearParticles as it appears to not be used

6 lines of code changed in 1 file:

jpedel 2011-03-28 13:44 Rev.: 47005

Adding energy coupling between coal particles and gas phase, and saving PO2 at particle surface

196 lines of code changed in 9 files:

guilkey 2011-03-28 12:14 Rev.: 47004

Make ElasticPlasticHP the model that is returned if elastic_plastic or
elastic_plastic_hp is specified in the input file. Also, make
MieGruneisenEOSEnergy be the EOS returned if mie-gruneisen is called for
in the input file.

This will change the answers in a few RT problems.

5 lines of code changed in 2 files:

jthornoc 2011-03-25 19:15 Rev.: 47003

Scalars initialized to zero inside of walls.

Also, internal naming convention change in ClassicTable interface.

39 lines of code changed in 3 files:

jthornoc 2011-03-25 14:22 Rev.: 47002

Make sure that properties are set to zero inside of wall.
Added in <hl_scalar_init> tag for the classic table.

39 lines of code changed in 8 files:

jthornoc 2011-03-25 11:51 Rev.: 47001

Removed assumption that the heat loss bounds are -1 to 1 and instead load the upper and lower bounds from the table itself.
Also, added a flag to turn on output if heat loss bounds are exceeded.

95 lines of code changed in 2 files:

tsaad 2011-03-25 11:39 Rev.: 47000

Changed the method of obtaining variable name for which we are setting the boundary conditions. We can get that from solution_variable_name() instead of using the problem specs. This will streamline the addition of the momentum BCs since the input spec for momentum does not follow that of TransportEquation (i.e. does NOT have a <SolutionVariable> block).

2 lines of code changed in 1 file:

tsaad 2011-03-25 11:31 Rev.: 46998

Fix bug in constructor for Dilatation term by setting the velocity tags.

4 lines of code changed in 1 file:

harman 2011-03-25 10:48 Rev.: 46997

added printschedule() and printTask() statements.
moved debugging output to afer the solve.

21 lines of code changed in 1 file:

harman 2011-03-24 14:46 Rev.: 46995

added code to print matrix, x and b, currently turned off

8 lines of code changed in 1 file:

guilkey 2011-03-24 12:00 Rev.: 46994

Allow this model to use any of the available EOS's in the PlasticityModels
directory.

4 lines of code changed in 1 file:

harman 2011-03-24 08:40 Rev.: 46993

added single level input file.

ProblemSetup()
- only read in the AMR options if the AMR tag is specified.

54 lines of code changed in 1 file:

dav 2011-03-23 16:31 Rev.: 46992

M Core/Parallel/Parallel.cc

Sanity check to make sure (the MPI) initializeManager() is called
before getMPIRank().

M StandAlone/sus.cc

- Put in some sanity checks to make sure if people are trying to use
certain environment variables, that sus is actually configured to
handle them.

- The show_env() debug tool needs to be run after MPI is initialized
so I moved it down a few lines in the file. (There are two possible
places that MPI is initialized, and it needs to be after both.)

- Place a few more lines into the main 'try' block of sus.

102 lines of code changed in 2 files:

harman 2011-03-23 14:14 Rev.: 46990

global: formatting, added {}, comments, horizontal & vertical spaces

solve()
- Now calling HYPRE_StructGridPeriodic() to let hypre know if
we're using a periodic grid.

schedulesolve()
- Changed the periodic bulletproofing conditional. If user has a periodic grid
the resolution in each direction must be a multiple of 2.

290 lines of code changed in 1 file:

guilkey 2011-03-23 12:12 Rev.: 46989

Make the model valid for spherical tension.

17 lines of code changed in 1 file:

jthornoc 2011-03-21 17:53 Rev.: 46988

Fixed a problem with checking for min on iv 2. Since iv 2 could be heat loss, and therefore negative, the check for the variable less than "small" needed to be removed.

Also cleaned up some warnings and removed a redundant print message.

18 lines of code changed in 1 file:

jthornoc 2011-03-21 17:52 Rev.: 46987

Call dummy init for ClassicTable.
Use proc0cout in a couple of places.

7 lines of code changed in 3 files:

guilkey 2011-03-21 17:49 Rev.: 46986

Add the artificial viscosity heating flag in one more spot.

1 lines of code changed in 1 file:

guilkey 2011-03-21 17:46 Rev.: 46985

Bringing in features from ElasticPlastic that haven't made their way into the
HP version.

57 lines of code changed in 2 files:

harman 2011-03-21 17:21 Rev.: 46984

turn off all memory tests

3 lines of code changed in 1 file:

guilkey 2011-03-21 17:07 Rev.: 46983

Merging in some changes from Scott Bardenhagen.

9 lines of code changed in 1 file:

guilkey 2011-03-21 14:33 Rev.: 46982

Remove cosmetic differences between these so that functional differences are
more easily identified.

33 lines of code changed in 2 files:

bgrimm 2011-03-21 12:17 Rev.: 46981

Change to uda reader to stop generating files in the source tree. Removed generated files from source tree.

1 lines of code changed in 6 files:

guilkey 2011-03-21 11:42 Rev.: 46980

Change calls to KMMCHK and KMMRXV to KAYENTA_CHK AND KAYENTA_RXV.

Get rid of empty .h files.

21 lines of code changed in 6 files:

harman 2011-03-21 09:40 Rev.: 46979

removed hdf5 configure option

6 lines of code changed in 1 file:

harman 2011-03-21 09:12 Rev.: 46978

tabs

196 lines of code changed in 25 files:

harman 2011-03-18 14:42 Rev.: 46977

bug fix:
- only run a test on the current platform if the OS or "all" has been specified
by the user.

Added:
The user can set the environmental variable
"WHICH_TESTS" = local/nightly
to override the default behavior of only running the tests defined
in the local section of the <Component.py> file. This is useful if you're
poking around in the innards of the infrastructure.

19 lines of code changed in 1 file:

jthornoc 2011-03-18 09:54 Rev.: 46976

Removed const specifier in coal models for ArchesLabels.
This will allow one to add species to the list of lookup species, which
will come in handy when a model depends on a table lookup variable.

(ie, using ArchesLabels::add_species( std::string ) )

55 lines of code changed in 38 files:

harman 2011-03-18 09:21 Rev.: 46975

Cleaned out some unused code

added:
echo "WHICH_TESTS" to the doTestScript.

This isn't needed but I added it for connsistency.

2 lines of code changed in 1 file:

jthornoc 2011-03-18 07:59 Rev.: 46974

Added <inverse> tag to intrusions. If this is activated, then cells
outside the geometry object is wall and cells inside the geometry object
are flow.

This is the inverse behavior of the intrusion object.

17 lines of code changed in 2 files:

harman 2011-03-17 16:55 Rev.: 46973

The return code of the first command is returned instead of the second command.

1 lines of code changed in 1 file:

harman 2011-03-17 14:59 Rev.: 46972

Components.PY:
- variable name change LOCAL_OR_NIGHTLY_TEST -> WHICH_TESTS

StartTester & StartLocalTest
- added environmental variable WHICH_TESTS with default value.
- The buildbot will overide the default value

16 lines of code changed in 15 files:

harman 2011-03-17 09:27 Rev.: 46971

periodic_disks is now run on 1 processor. This will provide full coverage
of the relocate code. Previous we only tested the parallel section of the code.
This will effect the answers.

2 lines of code changed in 1 file:

dav 2011-03-16 17:48 Rev.: 46970

Remove HDF5 warning for tabprops.

2 lines of code changed in 2 files:

jas 2011-03-16 15:59 Rev.: 46969

Remove dependency of HDF5.

9 lines of code changed in 2 files:

jthornoc 2011-03-16 14:04 Rev.: 46968

Reverting the compiler directive for TabProps.

8 lines of code changed in 4 files:

guilkey 2011-03-16 12:08 Rev.: 46967

Now using polarDecompositionAFFinvTran to compute the rotation tensor.

13 lines of code changed in 1 file:

guilkey 2011-03-16 12:05 Rev.: 46966

Adding yet another polarDecomposition technique. This one
(polarDecompositionAFFinvTran) seems to do a better job of returning
an orthogonal rotation tensor that polarDecompositionRMB.

54 lines of code changed in 2 files:

harman 2011-03-16 11:09 Rev.: 46965

Removed redundant code to create a symbolic link to the inputs directory.

make link_inputs

does it.

0 lines of code changed in 2 files:

jsutherland 2011-03-15 17:21 Rev.: 46963

remove a few lingering hdf5 things in build_wasatch_3p.sh

2 lines of code changed in 2 files:

harman 2011-03-15 15:19 Rev.: 46962

added: "USE_WASATCH=yes" to the opt configure line
deleted: "--with-hdf5" from the opt configure line

3 lines of code changed in 1 file:

jas 2011-03-15 14:18 Rev.: 46961

Remove HDF5 dependency for Wasatch.

26 lines of code changed in 2 files:

harman 2011-03-15 12:53 Rev.: 46960

tabs.

103 lines of code changed in 1 file:

jsutherland 2011-03-14 20:41 Rev.: 46959

Convert Wasatch over to new boost-based TabProps.

- regenerated table file and I didn't have the original input files, so this caused diffs. Accept them.

- Added the input file used to generate the table in TabProps.

- Delete old table.

12 lines of code changed in 3 files:

guilkey 2011-03-14 18:14 Rev.: 46958

Alter the random number seed based on the patchID in order to get different sets
of random #s on each patch.

26 lines of code changed in 2 files:

jthornoc 2011-03-14 17:38 Rev.: 46957

This should get the code compiling again.

8 lines of code changed in 4 files:

guilkey 2011-03-14 15:36 Rev.: 46956

Removed commented out code.

0 lines of code changed in 1 file:

jthornoc 2011-03-14 14:48 Rev.: 46955

Actually adding the old_super_bee option. Somehow this escaped my previous commit.

212 lines of code changed in 1 file:

jthornoc 2011-03-14 14:48 Rev.: 46953

Removed HDF5 dependencies. Tabprops interface now uses boost.

Classic table and new cold flow interface should now compile in regardless of TabProp
status.

18 lines of code changed in 4 files:

jthornoc 2011-03-14 14:47 Rev.: 46952

Don't preclude ClassicTable and new ColdFlow interfaces from compiling
if TabProps isn't configured in.

16 lines of code changed in 7 files:

harman 2011-03-14 13:44 Rev.: 46951

new regression test.
2 spheres colliding at the periodic boundaries.

2 lines of code changed in 1 file:

harman 2011-03-14 13:27 Rev.: 46950

Reverted back to using
IntVector vectorToNeighbor = toPatch->getExtraCellLowIndex() - fromPatch->getExtraCellLowIndex()

Previously, vectorToNeighbor was computed using extra cell positions instead of indicies. This does not work due to
numerical round off error. vectorToNeighbor was being computed twice, once when inserting the record
and once when finding the record. These two records != due to fuzz.

Added the toLevelIndex in the ScatterRecord, this will fix the multi-level issue.

findOrInsertRecord()
- return out of loop when scatter record is found.

findRecord()
- return out of loop if scatter record is found.


56 lines of code changed in 1 file:

jas 2011-03-12 01:20 Rev.: 46949

Do a more exhaustive find if the file isn't found for compare_uda.

5 lines of code changed in 1 file:

guilkey 2011-03-11 19:23 Rev.: 46948

Create and use an access operator for the d_tiny_rho that may now be different
for each material. MPMICE remains hardwired as it only applies to MPM matls,
for which tiny_rho remains a constant.

20 lines of code changed in 5 files:

harman 2011-03-11 18:39 Rev.: 46947

email John whenever an uda has been replaced AND the machine is rt.

2 lines of code changed in 1 file:

guilkey 2011-03-11 17:16 Rev.: 46946

Add d_tiny_rho to outputProblemSpec.

1 lines of code changed in 1 file:

guilkey 2011-03-11 16:34 Rev.: 46944

Comment out the #define for d_tiny_rho and replace it with
a run time option for this value, which defaults to the same
value as had been defined.

8 lines of code changed in 2 files:

jthornoc 2011-03-11 15:05 Rev.: 46943

Using compiler directive for cases where TabProps is not configured.

2 lines of code changed in 1 file:

jthornoc 2011-03-11 13:11 Rev.: 46942

Added a method in ArchesLabels for models to add additional species to
the table lookup list.

56 lines of code changed in 5 files:

jthornoc 2011-03-11 13:10 Rev.: 46941

Forgot to delete object from previous commit.

1 lines of code changed in 1 file:

jas 2011-03-11 11:03 Rev.: 46940

Fix typo for dqmom_test_2c.

1 lines of code changed in 1 file:

jthornoc 2011-03-11 10:01 Rev.: 46939

Generalized the independent variable transformation so that other
mappings can now occur.

Also fixed some bugs with missing transformations and boundary
initialization.

Added <heat_loss> tag to <FlowInlets> so that heat_loss can be specified
in the inlet.

274 lines of code changed in 6 files:

jas 2011-03-10 21:50 Rev.: 46938

Add wasatch tests and dqmom_2c test.

2 lines of code changed in 1 file:

jsutherland 2011-03-10 20:40 Rev.: 46937

remove an obselete compiler flag in wasatch3p build script.

0 lines of code changed in 1 file:

jsutherland 2011-03-10 20:33 Rev.: 46936

Fix wasatch3p build script due to recent commit.

1 lines of code changed in 1 file:

jsutherland 2011-03-10 20:25 Rev.: 46935

Merge branch 'stencil'

286 lines of code changed in 20 files:

guilkey 2011-03-10 18:19 Rev.: 46934

Fix outputProblemSpec type designation.

1 lines of code changed in 1 file:

harman 2011-03-10 15:26 Rev.: 46933

- added horizontal and vertical spaces.
- changes so it will work on multiple levels.

46 lines of code changed in 1 file:

guilkey 2011-03-09 15:56 Rev.: 46932

Add the option to specify a time for the intiation of detonation.

4 lines of code changed in 2 files:

dav 2011-03-09 15:47 Rev.: 46931

(Some) MPI lib depends on threads, so need to add THREAD_LIBRARY to link list.

2 lines of code changed in 1 file:

harman 2011-03-09 10:08 Rev.: 46930

Fixed an indentation problem.
Python uses indentation instead of {} in conditionals statements.

11 lines of code changed in 1 file:

harman 2011-03-08 17:51 Rev.: 46929

If the environmental variable MPIRUN has been set then use it, otherwise
default to using "mpirun."

23 lines of code changed in 3 files:

jas 2011-03-08 12:56 Rev.: 46928

Change cout to dbg.

1 lines of code changed in 1 file:

tsaad 2011-03-08 12:39 Rev.: 46927

Revert to previous version by removing the recomputeTimeStep function.

0 lines of code changed in 2 files:

dav 2011-03-08 12:30 Rev.: 46926

Added --with-mpi-include and --with-mpi-lib flags.

100 lines of code changed in 2 files:

jthornoc 2011-03-08 11:07 Rev.: 46925

Encapsulated some code into templates. Also removed the old extra
scalar from the constantMMS test problem. This will require a
goldstandard update.

718 lines of code changed in 2 files:

tsaad 2011-03-07 20:04 Rev.: 46924

Add parser for parabolic expression.

11 lines of code changed in 1 file:

tsaad 2011-03-07 20:03 Rev.: 46923

Add recomputeTimeStep - this is needed by the CGSolver.

14 lines of code changed in 2 files:

jpedel 2011-03-07 17:40 Rev.: 46921

Removing some debugging statements

1 lines of code changed in 4 files:

jpedel 2011-03-07 17:30

Recommitting previous update, code should pass Arches regression tests

987 lines of code changed in 28 files:

dav 2011-03-07 17:20 Rev.: 46918

Better error messages.

20 lines of code changed in 1 file:

dav 2011-03-07 17:18 Rev.: 46917

Explict use of namespace for vector.

0 lines of code changed in 2 files:

guilkey 2011-03-07 12:51 Rev.: 46916

Anal retentive edits.

8 lines of code changed in 1 file:

tsaad 2011-03-05 16:05 Rev.: 46915

Change the method of calculating strides so as to phase out the use of the IndexHelper.

27 lines of code changed in 2 files:

guilkey 2011-03-04 18:08 Rev.: 46913

Added a reference pressure P0, made all input parameters optional with default
values. Fixed the "type" description to be consistent with the EOSFactory.

29 lines of code changed in 2 files:

guilkey 2011-03-04 17:15 Rev.: 46912

Add information about typical values of the input parameters to the .h file.

8 lines of code changed in 1 file:

guilkey 2011-03-04 15:37 Rev.: 46911

Added an EOS for sea water. Probably less correct than ThomsenHartka, but it
is compatible with collaborators.

270 lines of code changed in 4 files:

guilkey 2011-03-04 13:56 Rev.: 46910

Remove the REQUIREMENT that BCs get set for specific volume. Setting it,
rather than letting it be computed naturally, often makes things much worse.
Todd might kick my ass for this, but that's what he gets for leaving town.

3 lines of code changed in 1 file:

jeff788 2011-03-04 13:56 Rev.: 46909

added spatial variability to the NonLocalDruckerPrager model

228 lines of code changed in 2 files:

guilkey 2011-03-04 13:46 Rev.: 46908

Changes made for optimization.

19 lines of code changed in 1 file:

tsaad 2011-03-04 12:06 Rev.: 46907

Added documentation to the HypreSolver interface.

34 lines of code changed in 1 file:

jeff788 2011-03-02 18:16 Rev.: 46905

fixed a buy in NonLocalDruckerPrager.cc, and made some inputs optional

8 lines of code changed in 1 file:

harman 2011-03-02 17:26 Rev.: 46904

More work on 2level RMCRT in testbed component.


--This line and those below, will be ignored--

M src/CCA/Components/Models/Radiation/RMCRT/Ray.cc
M src/CCA/Components/Models/Radiation/RMCRT/Ray.h
M src/CCA/Components/Arches/EnthalpySolver.cc
M src/CCA/Components/Examples/RMCRT_Test.h
M src/CCA/Components/Examples/RMCRT_Test.cc
M src/StandAlone/inputs/UPS_SPEC/Models.xml
M src/StandAlone/inputs/UPS_SPEC/RMCRT_test.xml
M src/StandAlone/inputs/Examples/RMCRT_test.ups

228 lines of code changed in 5 files:

harman 2011-03-02 16:01 Rev.: 46903

Moved
coarsenDriver_std() and coarsenDriver_massWeighted ()

from MPMICE to AMR_CoarsenRefine.cc, so other tasks can use them.

204 lines of code changed in 5 files:

harman 2011-03-02 15:17 Rev.: 46902

DynamicMPIScheduler.cc, MPIScheduler.cc, SingleProcessorScheduler.cc
- moved printTask to SchedulerCommon.cc

Added new DebugStream (TaskLevel)
Output the task name and the level it's executing on for the first
patch on that level.

96 lines of code changed in 7 files:

dav 2011-03-01 15:13 Rev.: 46901

Fix linking on Mac... Arches now depends on Core_IO for getString().

1 lines of code changed in 1 file:

February 2011 »

Generated by StatSVN 0.4.0