August 2011 Commit Log

Number of Commits:
110
Number of Active Developers:
11
jas 2011-08-31 13:49 Rev.: 47539

Revert the copyright date change that was done incorrectly.

30 lines of code changed in 29 files:

harman 2011-08-31 11:11 Rev.: 47538

4disks_2d.1mat.ups:
-increase checkpoint frequency
UCF.py
- turn off memory testing on the switch test. It leaks and I don't know why.

2 lines of code changed in 1 file:

harman 2011-08-31 10:42 Rev.: 47537

throw an exception if using impm and comp_neo_hook_plastic.

6 lines of code changed in 1 file:

jas 2011-08-31 02:48 Rev.: 47536

Update copyright year.

1975 lines of code changed in 2905 files:

harman 2011-08-30 17:01 Rev.: 47535

formatting.
Added vertical and horizontal spacing, vertical alignment and {}.

118 lines of code changed in 2 files:

harman 2011-08-30 15:24 Rev.: 47534

set flag d_8or27 in constructor

1 lines of code changed in 1 file:

harman 2011-08-30 09:18 Rev.: 47533

cleaned out some dead wood
- removed port deletes in destructor. That's handled upstream in UintahParallelComponent.cc
-

2 lines of code changed in 2 files:

harman 2011-08-29 18:13 Rev.: 47532

added switching example to local and nightly RT

8 lines of code changed in 1 file:

harman 2011-08-29 16:29 Rev.: 47530

-comments & proc0cout statements
-more descriptive variables

Now works for inputs/UCF/switchExample_impm_mpm.ups

63 lines of code changed in 2 files:

jpeterson 2011-08-29 15:32 Rev.: 47528

Prevent printing default value for volume fraction to UPS file that is saved, as it may be confusing.

2 lines of code changed in 1 file:

harman 2011-08-29 14:48 Rev.: 47526

problemSetup()
- added comment and proc0cout statement.

7 lines of code changed in 1 file:

jpedel 2011-08-29 10:24 Rev.: 47525

Fixing an error

2 lines of code changed in 1 file:

guilkey 2011-08-27 12:35 Rev.: 47524

Set symmetry boundary conditions on the interpolated velocity AFTER applying contact.
This will probably change some answers (for the better!) in the RT.

9 lines of code changed in 1 file:

harman 2011-08-26 12:30 Rev.: 47523

addSharedCRForImplicit()
- added requires for p.stress.

1 lines of code changed in 1 file:

jthornoc 2011-08-26 10:41 Rev.: 47521

Actually pass the user-specified number of max iterations to the petsc
solver.

Update RT files to increase the number of petsc iterations. This should
keep the RT from failing.

Added Prefill to the ups spec to allow for prefill with new boundary
conditions.

5 lines of code changed in 5 files:

tsaad 2011-08-25 17:44 Rev.: 47520

add verification test for temporal order of accuracy for RK3. Also, now that hypre and openmpirun play well on bigmac, update the gold standards for all momentum tests to use hypre.

10 lines of code changed in 1 file:

harman 2011-08-25 17:02 Rev.: 47519

removed debugging output

0 lines of code changed in 1 file:

harman 2011-08-25 17:02 Rev.: 47518

added big/little endian support.

61 lines of code changed in 1 file:

harman 2011-08-25 15:17 Rev.: 47517

only write out a pts file for a matl if the matl was specified in the input file.

21 lines of code changed in 1 file:

tsaad 2011-08-25 13:11 Rev.: 47516

Fix scheduling of coordinates task for RK3 integrator.

1 lines of code changed in 1 file:

jsutherland 2011-08-25 11:18 Rev.: 47515

fix patch usage in wasatch.

32 lines of code changed in 6 files:

harman 2011-08-25 10:58 Rev.: 47514

added rawToUniqueGrains to the tools macro

3 lines of code changed in 1 file:

harman 2011-08-24 15:50 Rev.: 47512

The switcher related code and tasks are now consistent with the implementation in
IMPM and MPMICE.

22 lines of code changed in 2 files:

harman 2011-08-24 11:22 Rev.: 47511

no longer creating symbolic link to deprecated regression testing
when compiling "uintah"

0 lines of code changed in 1 file:

jsutherland 2011-08-23 17:45 Rev.: 47510

std::cout -> proc0cout

2 lines of code changed in 1 file:

jsutherland 2011-08-23 17:44 Rev.: 47508

Only set up wasatch task graphs on patches local to the MPI process.

13 lines of code changed in 1 file:

jsutherland 2011-08-23 17:44 Rev.: 47507

Fix some const issues with the RK scheme flag.

63 lines of code changed in 5 files:

jthornoc 2011-08-23 17:34 Rev.: 47506

Update the outlet BC mass balance with appropriate color.

2 lines of code changed in 1 file:

tsaad 2011-08-23 12:13 Rev.: 47505

revert to old momentum input files to fix breaking regression tests

8 lines of code changed in 1 file:

jthornoc 2011-08-23 12:07 Rev.: 47504

Fix some wonky logic.

56 lines of code changed in 1 file:

jsutherland 2011-08-23 09:52 Rev.: 47503

back out a change that I accidentally committed recently.

10 lines of code changed in 1 file:

jthornoc 2011-08-23 08:50 Rev.: 47502

Removing commits until the RT can be sorted.

10 lines of code changed in 2 files:

jsutherland 2011-08-23 08:36 Rev.: 47501

Commit Dav's fix to get OSX Lion 10.7 working with the build system.

12 lines of code changed in 2 files:

jthornoc 2011-08-23 08:10 Rev.: 47500

Bullet proofing.

14 lines of code changed in 1 file:

jthornoc 2011-08-22 17:03 Rev.: 47498

Fix a restart issue with uninitialized index map for depend. variables
when restarting.

3 lines of code changed in 1 file:

jthornoc 2011-08-22 17:03 Rev.: 47497

Initialize boolean (_mf_for_hl) and add comments to radiation source
term.

6 lines of code changed in 2 files:

harman 2011-08-22 14:27 Rev.: 47496

added OnTheFlyAnalysis to libs.

1 lines of code changed in 1 file:

jsutherland 2011-08-22 14:13 Rev.: 47495

Fix problem with operator allocation on all patches for each patch...

53 lines of code changed in 2 files:

harman 2011-08-19 17:14 Rev.: 47494


OntheFlyAnalysis:lineExtract

- The default matl is 0 but the user override that by specifying:
<material> [name of matl] <material> or
<materialIndex> <materialIndex>.


MPMArches can now use the DataAnalysis utilities.

96 lines of code changed in 6 files:

jthornoc 2011-08-19 15:41 Rev.: 47493

Removed debugging print statement.

0 lines of code changed in 1 file:

jsutherland 2011-08-19 14:40 Rev.: 47492

clean up some redundant code

5 lines of code changed in 1 file:

jpeterson 2011-08-19 14:24 Rev.: 47491

Fixed a conditional for EOS output to input file.

1 lines of code changed in 1 file:

jpeterson 2011-08-19 13:43 Rev.: 47490

Renamed some helper functions to be more descriptive.

41 lines of code changed in 2 files:

jthornoc 2011-08-18 15:32 Rev.: 47489

Fixed a problem when using the new enthalpy solver with heat loss --
heat loss wasn't being computed because of a boolean which was set for
the old solver.

Also added a developer switch for using pure stream enthalpies
and mixture fraction to compute adiabatic enthalpy rather than looking
up adiabatic enthalpy in the table. This is for testing only at the
moment.

51 lines of code changed in 5 files:

jthornoc 2011-08-18 15:31 Rev.: 47488

Using std::abs rather than fabs.

1 lines of code changed in 1 file:

jthornoc 2011-08-18 15:31 Rev.: 47487

Move comment.

1 lines of code changed in 1 file:

guilkey 2011-08-18 13:22 Rev.: 47485

Fix a small bug in the pressure BCs. Now, a <res> tag must be included when
specifying an axisymmetric cylinder end in order to get the area of those
particles correct.

13 lines of code changed in 3 files:

jas 2011-08-17 17:13 Rev.: 47482

Fix the explode_2D amr failure notification.

1 lines of code changed in 1 file:

guilkey 2011-08-17 16:07 Rev.: 47480

Cleaning up the applyExternalForce code in the process of trying to find a bug.

40 lines of code changed in 1 file:

guilkey 2011-08-17 12:49 Rev.: 47476

Fixed two typos that resulted in compiler errors.

2 lines of code changed in 1 file:

guilkey 2011-08-17 12:27 Rev.: 47475

Add the option to use cpGIMP at runtime. This option should be used with
caution, and is not likely to perform well in problems involving signficant
rotation.

77 lines of code changed in 2 files:

jthornoc 2011-08-17 11:51 Rev.: 47474

Add a pilot light to the westbrook source term.

67 lines of code changed in 4 files:

jthornoc 2011-08-17 09:28 Rev.: 47471

Pesky soot variable problems. This should fix the heated block rt test.

16 lines of code changed in 2 files:

guilkey 2011-08-16 18:35 Rev.: 47469

Fixing a minor mistake in previous commit.

10 lines of code changed in 1 file:

guilkey 2011-08-16 18:21 Rev.: 47468

Updating the interface to the Kayenta fortran code, thanks to Brian Leavy for
doing this.

219 lines of code changed in 2 files:

jthornoc 2011-08-16 17:12 Rev.: 47466

Compiler warnings.

3 lines of code changed in 7 files:

jthornoc 2011-08-16 16:42 Rev.: 47465

Using the old soot label for the new DORadiation interface. This
satisfies the const requirement for the radiation solver but is not an
optimal solution. Once the soot model is refactored, this requirement
should be reexamined.

18 lines of code changed in 3 files:

jpeterson 2011-08-16 12:01 Rev.: 47461

Third time is a charm. The task was only scheduled for MPM materials, but we need one requires scheduled for ICE too. Modified to explicitly specify material needed.

15 lines of code changed in 1 file:

jthornoc 2011-08-16 07:58 Rev.: 47460

Added some comments to the new flux limiter interface.
Added the VanLeer flux limiter.

39 lines of code changed in 1 file:

jthornoc 2011-08-16 07:28 Rev.: 47459

Simplified implementation of flux limiters to remove redundant code.
This should allow for easier implementation of various limiters.

989 lines of code changed in 1 file:

tsaad 2011-08-16 03:10 Rev.: 47458

Modify regression tests for momentum transport to use hypre with multipatch layout in parallel. These tests used CGSolver by default.

8 lines of code changed in 1 file:

tsaad 2011-08-16 02:57 Rev.: 47457

Silence Wasatch compiler warnings.

15 lines of code changed in 4 files:

tsaad 2011-08-16 00:41 Rev.: 47456

Add RK3SSP time integrator (3rd order strong stability preserving Runge-Kutta scheme). This works for multipatch problems and in parallel. NOTE: there is an issue with pressure solve when projecting at each integration stage. Currently, this works when projecting for the predictor (first) stage.

328 lines of code changed in 10 files:

jthornoc 2011-08-15 09:46 Rev.: 47455

-> When computing heat loss, set boundary values consistent with boundary
conditions for the property evaluation. This fixes the problem Julien
observed and tried to fix with the previous kludge.
-> Simplified new boundary condition class by removing redundant code.
-> Make the acidbase_jet problem dump checkpoints.

89 lines of code changed in 3 files:

jpeterson 2011-08-15 09:11 Rev.: 47454

This should get rid of the regression test failure.

5 lines of code changed in 1 file:

jthornoc 2011-08-15 06:41 Rev.: 47453

Removing Julien's kludge. Will manage the boundary heat loss another
way.

1 lines of code changed in 1 file:

jpedel 2011-08-14 17:07 Rev.: 47452

Temporary fix for the heatloss boundary condition problem. Will only work for zero Neumann boundary condition

3 lines of code changed in 1 file:

jpedel 2011-08-14 17:01 Rev.: 47451

Removing unused variable

0 lines of code changed in 1 file:

jpedel 2011-08-14 16:57 Rev.: 47450

Better model implementation for the weighted abscissas formualtion. Other models will be modified later.

100 lines of code changed in 9 files:

jpedel 2011-08-14 16:52 Rev.: 47449

Avoiding error in source term for weights.

4 lines of code changed in 1 file:

jpedel 2011-08-14 16:48 Rev.: 47448

Moving towards a better formulation for weighted abscissas

8 lines of code changed in 1 file:

jpedel 2011-08-14 16:34 Rev.: 47446

Adding minmod flux limiter

454 lines of code changed in 4 files:

jsutherland 2011-08-11 13:20 Rev.: 47443

Eliminate some un-needed diagnostic output.

8 lines of code changed in 1 file:

tsaad 2011-08-11 11:55 Rev.: 47442

Silence some compiler warnings.

26 lines of code changed in 2 files:

jsutherland 2011-08-11 10:49 Rev.: 47441

clean up a compiler warning.

0 lines of code changed in 1 file:

jsutherland 2011-08-11 10:31 Rev.: 47440

fix a syntax error.

1 lines of code changed in 1 file:

jsutherland 2011-08-11 10:24 Rev.: 47439

Only output graphs from process 0.

22 lines of code changed in 1 file:

jpeterson 2011-08-10 12:54 Rev.: 47438

This will fix the Regression Tester's failure on optimized to run LBwoRegrid.ups and guni2dRT.ups. I'm still working on the requires/computes issue with the debug build.

7 lines of code changed in 1 file:

jas 2011-08-10 12:34 Rev.: 47437

Revert changes to HYPRE configure -- just specify the single HYPRE library.

5 lines of code changed in 2 files:

jpeterson 2011-08-09 15:15 Rev.: 47436

Fixed the logic to be exclusive, instead of inclusive. Should allow the BuildBot to pass on the MPMICE tests.

3 lines of code changed in 1 file:

jpeterson 2011-08-09 14:25 Rev.: 47435

Pulled some weeds from the last commit.

0 lines of code changed in 1 file:

jpeterson 2011-08-09 14:08 Rev.: 47434

Removed a debugging statement.

0 lines of code changed in 1 file:

jpeterson 2011-08-09 14:06 Rev.: 47433

Added the ability to do variable volume fraction of a constituent based on geometry objects.
Uses the tag <volumeFraction> in a geometry object. All volume fractions in a cell must sum
to 1. Also if <volumeFraction> is specified for one geometry object it should be specified
for all geometry objects. Works in MPM and ICE.

M doc/UserGuide/ice.tex

Documentation included.

M src/CCA/Components/MPM/ConstitutiveModel/MPMMaterial.h
M src/CCA/Components/MPM/ConstitutiveModel/MPMMaterial.cc
M src/CCA/Components/MPM/ParticleCreator/ParticleCreator.cc
M src/CCA/Components/ICE/ICE.cc
M src/CCA/Components/ICE/ICEMaterial.cc
M src/CCA/Components/MPMICE/MPMICE.cc
M src/Core/GeometryPiece/GeometryPieceFactory.cc
M src/Core/GeometryPiece/GeometryObject.cc
M src/StandAlone/inputs/UPS_SPEC/ups_spec.xml

The actual slaughter.

162 lines of code changed in 8 files:

jas 2011-08-08 21:19 Rev.: 47432

Fixes for static compilation for gcc 4.6.

6 lines of code changed in 3 files:

ahumphrey 2011-08-05 15:01 Rev.: 47431

Deleted abandoned file from build system (/trunk).

0 lines of code changed in 1 file:

jthornoc 2011-08-05 12:48 Rev.: 47428

Moving the VarLabel resolution up in the code for restarts.

3 lines of code changed in 1 file:

jthornoc 2011-08-05 12:02 Rev.: 47427

Adding missing files.

481 lines of code changed in 2 files:

jthornoc 2011-08-05 11:27 Rev.: 47426

Added capability to define an enthalpy solver in the <TransportEqn>
section. This is beta testing only.

64 lines of code changed in 7 files:

jthornoc 2011-08-05 11:26 Rev.: 47425

Re-abstraction of DORadiation model into a "source" for a generic transport equation.

For Boundary conditions (except flow inlets -- there is a problem here when multiple inlets are present): switched over to static cell definitions from on-the-fly ones. Marks the beginning for the slow, painful transition to new boundary conditions.

32 lines of code changed in 8 files:

dav 2011-08-04 16:44 Rev.: 47423


Fix linking problem (manifested via OSX). Need the GeometryPiece library.

1 lines of code changed in 1 file:

dav 2011-08-04 16:36 Rev.: 47422


M CCA/Components/Parent/Switcher.cc
M Core/GeometryPiece/GeometryPieceFactory.cc
M Core/GeometryPiece/GeometryPieceFactory.h

- Fix function name (typo).

3 lines of code changed in 3 files:

ahumphrey 2011-08-04 15:34 Rev.: 47420

Added necessary #include to SimulationController header file.

2 lines of code changed in 1 file:

jsutherland 2011-08-04 15:28 Rev.: 47419

Simplify a function interface for Devin.

12 lines of code changed in 2 files:

ahumphrey 2011-08-03 17:41 Rev.: 47418

#ifdef put around PAPI specific members in SimulationController.

5 lines of code changed in 1 file:

tsaad 2011-08-03 16:09 Rev.: 47415

fix inconsistency in interior iterator loops when calculating quadrature environments for qmom. should use interior_begin() and interior_end() for all interior iterators.

5 lines of code changed in 1 file:

qymeng 2011-08-02 22:09 Rev.: 47413

cleanup some debug code

2 lines of code changed in 1 file:

qymeng 2011-08-02 22:06 Rev.: 47412

More PAPI error handling

23 lines of code changed in 1 file:

jpeterson 2011-08-02 16:08 Rev.: 47409

Renamed all 'Murnahan' EOS references to 'Murnaghan'.

875 lines of code changed in 12 files:

qymeng 2011-08-02 15:45 Rev.: 47408

Use low level PAPI APIs

34 lines of code changed in 3 files:

harman 2011-08-02 13:22 Rev.: 47406

added method to reset factory, only needed by switcher component. -Dav

12 lines of code changed in 2 files:

harman 2011-08-02 12:26 Rev.: 47405

Added to the todo list.

2 lines of code changed in 1 file:

harman 2011-08-02 12:18 Rev.: 47404

reviving an old component.
- runs for 2 very simple mpmice subcomponents
- still contains confusing code in constructor

117 lines of code changed in 2 files:

harman 2011-08-02 11:58 Rev.: 47402

added debug stream output in scheduling and actual tasks
now using proc0cout instead of conditionals and couts

41 lines of code changed in 5 files:

jsutherland 2011-08-01 23:37 Rev.: 47401

Minor cleanup after Tony's checkin.

124 lines of code changed in 6 files:

tsaad 2011-08-01 20:02 Rev.: 47400

remove a printf statement.

1 lines of code changed in 1 file:

tsaad 2011-08-01 19:52 Rev.: 47399

this should fix the buildbot error. remove obsolete MomentRHS class.

23 lines of code changed in 1 file:

tsaad 2011-08-01 19:34 Rev.: 47398

Fix header filename.appears to be case sensitive for the buildbot.

1 lines of code changed in 1 file:

qymeng 2011-08-01 16:36 Rev.: 47397

Added error handling for PAPI calls

8 lines of code changed in 2 files:

tsaad 2011-08-01 15:52 Rev.: 47396

Add quadrature method of moments (QMOM) capability in Wasatch. This uses the product difference algorithm (PDA) to calculate the weight and abscissae of the transported moments. We use lapack to find the eigenvalues of the matrix setup by the PDA. TO DO: add regression test, finalize documentation, add fractional moments, and a convenient way to specify initial conditions for population balances.

1633 lines of code changed in 14 files:

jpeterson 2011-08-01 15:49 Rev.: 47395

Added the Birch-Murnaghan EOS to ViscoScram's pressure and density calculation.

98 lines of code changed in 2 files:

July 2011 »

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