Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2007


 S. Davidson, S. Cohen-Boulakia, A. Eyal, B. Ludascher, T. McPhillips, S. Bowers, J. Freire. “Provenance in Scientific Workflow Systems,” In IEEE Data Engineering Bulletin, Vol. 32, No. 4, pp. 44--50. 2007.


C.E. Scheidegger, H.T. Vo, D. Koop, J. Freire, C.T. Silva. “Querying and Creating Visualizations by Analogy,” In Proceeding of IEEE Visualization 2007, pp. 1560--1567. 2007.


C.T. Silva, J. Freire, S.P. Callahan. “Provenance for Visualizations: Reproducibility and Beyond,” In IEEE Computing in Science and Engineering, Vol. 9, No. 5, pp. 82--89. 2007.

2006


 S.P. Callahan, J. Freire, E. Santos, C.E. Scheidegger, C.T. Silva, H.T. Vo. “Managing the Evolution of Dataflows with VisTrails,” In Proceedings of The 2006 IEEE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow 2006), 2006.


S.P. Callahan, J. Freire, E. Santos, C. Scheidegger, C.T. Silva, H.T. Vo. “VisTrails: Visualization Meets Data Management,” In Proceedings of the 2006 ACM SIGMOD/PODS Conference, pp. 745--747. 2006.


S.P. Callahan, J. Freire, E. Santos, C.E. Scheidegger, C.T. Silva, H.T. Vo. “Using Provenance to Streamline Data Exploration through Visualization,” SCI Institute Technical Report, No. UUSCI-2006-016, University of Utah, 2006.


E. Eide, L. Stoller, T. Stack, J. Freire, J. Lepreau. “Integrated Scientific Workflow Management for the Emulab Network Testbed,” In Proceedings of the 2006 USENIX Annual Technical Conference, pp. 33. 2006.


J. Freire, C.T. Silva, S.P. Callahan, E. Santos, C.E. Scheidegger, H.T. Vo. “Managing Rapidly-Evolving Scientific Workflows,” In Provenance and Annotation of Data, In Proceedings of The 2006 International Provenance and Annotation Workshop, Lecture Notes in Computer Science (LNCS), pp. 10--18. 2006.

2005


 L. Bavoil, S.P. Callahan, P.J. Crossno, J. Freire, C.E. Scheidegger, C.T. Silva, H.T. Vo. “Vistrails: Enabling Interactive Multiple-View Visualizations,” In Proceeding of IEEE Visualization 2005, pp. 18. 2005.