Journal
Publications
- T. Tasdizen,
”Principal Neighborhood Dictionaries for Non-local Means Image
Denoising," IEEE Trans Image Processing, in press.
- J.R. Anderson, B.
W. Jones, J-H Yang, M.V. Shaw, C.B. Watt, P. Koshevoy,
J. Spaltenstein, E. Jurrus, Kannan U V, R. Whitaker, D. Mastronarde ,
T. Tasdizen, R.E. Marc. "A
Computational
Framework for Ultrastructural Mapping of Neural Circuitry," PLoS
Biology, March, vol. 7, no. 3, pp. e74, 2009.
- J. S. Preston, T.
Tasdizen, C. M. Terry, A. K. Cheung and
R. M. Kirby, "Using
the Stochastic Collocation Method for the
Uncertainty Quantification of Drug Concentration due to Depot Shape
Variability," IEEE Trans. Biomedical Engineering, Volume 56,
no 3, pp. 609-620, March 2009.
- E. Jurrus, M.
Hardy, T. Tasdizen, P. T. Fletcher, P.
Koshevoy, C.-B. Chien, W. Denk and R. Whitaker, "Axon
tracking in Serial Block-Face Scanning Electron Microscopy," Medical
Image Analysis, Volume 13, Issue 1, Pages 180-188, February 2009.
- N. L. Foster, A.
Y. Wang, T. Tasdizen , P. T. Fletcher, J.
M. Hoffman and R. A. Koeppe, "Realizing
the potential of positron emission tomography wuth F-fluorodeoxyglucose
to improve the treatment of Alzheimer's disease," The Journal of
the Alzheimer's Association, Vol 4:1, Suppl. 1, Pages 29-36, 2008.
- Ganesh Adluru,
Suyash P. Awate, T. Tasdizen, Ross T.
Whitaker and Edward V. R. DiBella, “Temporally Constrained
Reconstruction of Dynamic Cardiac Perfusion MRI,” Magnetic
Resonance in Medicine, Vol 57, Pages 1027-1036, 2007.
- Oliver Nemitz, T.
Tasdizen, Martin Rumpf and Ross T.
Whitaker, “Anisotropic Curvature
Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,”
Journal of Mathematical Imaging and Vision, Vol 7, Num 3, Pages
217-229, 2007.
- Suyash P. Awate,
T. Tasdizen, Norman L. Foster and Ross T.
Whitaker, “Adaptive,
Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue
Classification,” Medical Image Analysis, Vol. 10, Num. 5,
Pages 726-739, 2006.
- T. Tasdizen and
Ross T. Whitaker, “Higher-order
Nonlinear Priors
for Surface Reconstruction,” IEEE Transactions on Pattern
Analysis and Machine Intelligence, Vol. 26, Num. 7, Pages 878-891, July
2004.
- T. Tasdizen, Ross
T. Whitaker, Paul Burchard and Stanley
Osher, “Geometric Surface
Processing via Normal Maps,” ACM Transactions on Graphics,
Vol. 22, Num. 4, Pages1012-1033, October 2003.
- T. Tasdizen,
Jean-Philippe Tarel and David B. Cooper,
“Improving the Stability
of Algebraic Curves for Applications,” IEEE Transactions on
Image Processing, Vol. 9, Num. 3, Pages405-416, March 2000.
- T. Tasdizen, Lale Akarun and
Cem Ersoy, “Color Quantization with Genetic Algorithms,”
Signal Processing: Image Communication, Vol. 12, Pages 49-57, January
1998.
Peer reviewed Conference
and Workshop Publications
- E. Jurrus, A. R. C. Paiva, S. Watanabe, R.
Whitaker, E. M. Jorgensen and T. Tasdizen, ”Serial Neural Network
Classifier for Membrane Detection using a Filter Bank,” to appear
in Microscopic Image Analysis with Applications in Biology, 2009.
- S. Gerber, T. Tasdizen and R. T. Whitaker,
”Dimensionality Reduction and Principal Surfaces via Kernel Map
Manifolds,” to appear in ICCV 2009.
- S. Gerber, T. Tasdizen, S. Joshi and R. T. Whitaker,
”On the Manifold Structure of the Space of Brain Images” to
appear in MICCAI 2009.
- K.. U. Venkataraju, A. Paiva, E. Jurrus. T. Tasdizen,
”Automatic Markup of Neural Cell Membranes using Boosted Decision
Stumps,” IEEE International Symposium on Biomedical Imaging
(ISBI): From Nano to Macro, 2009
- J. Anderson, B. Jones, J. H. Yang, M. Shaw, C. Watt, P.
Koshevoy, J. Spaltenstein, E. Jurrus, K. U. Venkataraju, R. Whitaker,
D. Mastronarde, T. Tasdizen, R. Marc, ”Ultrastructural mapping of
neural circuitry: A computational framework,” IEEE
International Symposium on Biomedical Imaging (ISBI): From Nano to
Macro, 2009.
- T. Tasdizen , E. Jurrus and R. T. Whitaker, "Non-uniform Illumination
Correction in Transmission Electron Microscopy," MICCAI Workshop on
Microscopic Image Analysis with Applications in Biology, 2008.
- T. Tasdizen , "Principal
Components for Non-Local Means Image Denoising," Proceedings of the
IEEE International Conference on Image Processing, 2008.
- N. Sadeghi, N. L. Foster, A. Y. Wang, A. P.
Lieberman and T. Tasdizen , "Automatic
Classification of Alzheimer's Disease vs. Frontotemporal Dementia: A
Spatial Decision Tree Aprroach with FDG-PET," Proceedings of IEEE
International Symposium on Biomedical Imaging: From Nano to Macro,
Pages 408-411, 2008.
- E. Jurrus, R.T. Whitaker, B. W. Jones, R. E.
Marc
and T. Tasdizen , "An
Optimal-Path Approach for Neural Circuit Reconstruction,"
Proceedings of IEEE International Symposium on Biomedical Imaging: From
Nano to Macro, Pages 1609-1612, 2008.
- S. Gerber, T. Tasdizen and R. Whitaker, “Robust Non-linear Dimensionality Reduction using
Successive 1-Dimensional Laplacian Eigenmaps,” in Proceedings
of International Conference on Machine Learning (ICML), Pages 281-288,
2007
- T. Tasdizen, Pavel A. Koshevoy, Bryan W.
Jones, Ross T.
Whitaker and Robert E. Marc, “Assembly of
Three-Dimensional Volumes from Serial-Section Transmission Electron
Microscopy,” Proceedings of MICCAI Workshop on Microscopic
Image Analysis with Applications in Biology, pp 10-17, October 2006.
- Elizabeth Jurrus, T. Tasdizen, Pavel A.
Koshevoy, Melissa
Hardy, Chi-Bin Chien, Ross T. Whitaker, Winfred Denk, “Axon Tracking in Serial
Block-Face Scanning Electron Microscopy” Proceedings of
MICCAI Workshop on Microscopic Image Analysis with Applications in
Biology, Pages 114-119, October 2006.
- Suyash P. Awate, Edward V. R. DiBella, T.
Tasdizen and Ross
Whitaker, ”Model-Based
Image Reconstruction for Dynamic Cardiac Perfusion MRI from Sparse Data,”
IEEE Int. Conf. Engineering and Biology Society (EMBC), Pages 936-941,
2006.
- Suyash P. Awate, T. Tasdizen and Ross T.
Whitaker, “Unsupervised Texture
Segmentation with
Nonparametric Neighborhood Statistics,” European Conference
on Computer Vision (ECCV), 2006.
- Joe M. Kniss, Robert Van Uitert, Abe Stephens,
Guo-Shi Li,
T. Tasdizen and Charles Hansen, “Statistically
Quantitative Volume Visualization,” Proceedings of IEEE
Visualization, 2006.
- T. Tasdizen, Suyash P. Awate, Ross T. Whitaker
and Norman
L. Foster, “MRI Tissue
Classification with Neighborhood Statistics: A Nonparametric,
Entropy-Minimizing Approach,” Proceedings of Medical Image
Computing and Computer Assisted Intervention (MICCAI), Vol. 2, Pages
517-525, 2005.
- T. Tasdizen, Ross T. Whitaker, Robert E. Marc
and Bryan W.
Jones, “Enhancement of Cell
Boundaries in Transmission Electron Microscopy Images,”
Proceedings of International Conference on Image Processing (ICIP),
Vol. 2, Pages 129-132, September 2005.
- Leo Grady and T. Tasdizen, “A Geometric Multigrid Approach to
Solving the 2D Inhomogeneous Laplace Equation with Internal Drichlet
Boundary Conditions,” Proceedings of International Conference
on Image Processing (ICIP), Vol. 2, Pages 642-645, September 2005.
- G. Kindlmann, A. L. Alexander, M. Lazar, J.
Lee, T.
Tasdizen
and R. T. Whitaker, “An Algorithm for Moment-Based Global
Registration of Echo Planar Diffusion-Weighted Images,”
Proceedings of 12th Annual ISMRM, Pages 2200, 2004.
- T. Tasdizen and Ross T. Whitaker, “Anisotropic Diffusion of Surface
Normals for Feature Preserving Surface Reconstruction”,
Proceedings of 4th International Conference on 3D Digital Imaging and
Modeling, Pages 353-360, October 2003.
- T. Tasdizen and Ross T. Whitaker, “Cramer-Rao Bounds for Nonparametric
Surface Reconstruction from Range Data,” Proceedings of 4th
International Conference on 3D Digital Imaging and Modeling, Pages
70-77, October 2003.
- T. Tasdizen and Ross T. Whitaker, “Feature Preserving Variational
Smoothing of Terrain Data,” 2nd International IEEE Workshop
on Variational, Geometric and Level Set Methods in Computer Vision,
October 2003.
- Gordon Kindlmann, Ross T. Whitaker, T.
Tasdizen and Torsten
Miller, “Curvature-Based
Transfer Functions for Direct Volume Rendering: Methods and Applications,”
Proceedings of IEEE Visualization, Pages 513-520, October 2003. [HTML]
- Simon Premoze, T. Tasdizen, James Bigler,
Aaron Lefohn and
Ross T. Whitaker, “Particle-Base
Simulation of Fluids,” Proceedings of Eurographics, Pages
401-410, September 2003. [HTML]
- M. Barzohar, L. Preminger. T. Tasdizen and
David B. Cooper,
“Robust Method for Completely Automatic Aerial Detection of
Occluded Roads with New Initialization,” Proceedings of SPIE
– Vol. 4820, Infrared Technology and Applications XXVII, Pages
688-698, January 2003.
- T. Tasdizen, Ross T. Whitaker. Paul Burchard
and Stanley
Osher, “Geometric Surface
Smoothing via Anisotropic Diffusion of Normals” Proceedings
of IEEE Visualization, Pages 125-132, October 2002.
- T. Tasdizen and David B. Cooper, “Boundary Estimation from
Intensity/Color Images with Algebraic Curve Models,”
Proceedings of 15th IEEE Computer Society International Conference on
Pattern Recognition (ICPR), Vol. 1, Pages 225-228, September 2000, Best
Student Paper Award Honorable Mention.
- T. Tasdizen, Jean-Philippe Tarel and David B.
Cooper,
“Algebraic Curves that Work
Better,” Proceedings of IEEE Computer Society Conference on
Computer Vision and Pattern Recognition, Vol. 2, Pages35-41, June 1999.
- Zhibin Lei, T. Tasdizen and David B. Cooper,
“PIMS and Invariant Parts for Shape
Recognition,” Proceedings of 6th IEEE Computer Society
International Conference on Computer Vision (ICCV), January 1997.
- Lale Akarun, T. Tasdizen and Cem Ersoy,
“Genetik
Algoritmalarla Renk Nicemlemesi,” SIU Bildiriler Kitabi, April
1997, in Turkish.
Abstracts
- J. Anderson, B. W. Jones, D. Mastronarde, P.
Koshevoy, C.B.
Watt, J. Yang, T. Tasdizen, R. Whittaker, J. Spaltenstein, R.E. Marc,
”The Retinal Connectome: Networks in the Amacrine Cell
Layer”, The Association for Research in Vision and Ophthalmology
(ARVO), 2009.
- E. Jurrus, T. Tasdizen , S.
Watanabe, M. W. Davis, E. M. Jorgensen and R. T. Whitaker, "Semi-automated
reconstruction of the neuromuscular junctions in C. elegans,"
MICCAI Workshop on Microscopic Image Analysis with Applications in
Biology, 2008.
- N. L. Foster, A. Y. Wang, T. Tasdizen ,
K. Chen, W. Jagust, R. A. Koeppe, E. Reiman, M. W. Weiner and S.
Minoshima, "Cerebral Hypometabolism suggesting Frontotemporal Dementia
in an Alzheimer's Disease Clinical Trial," American Academy of
Neurology, 2008.
- T. Fletcher, A. Wang, T. Tasdizen, K. Chen, W.
Jagust, R. Koeppe, E. Reiman, M. Weiner, S. Minoshima, N.
Foster, ”Variability of Normal Cerebral Glucose Metabolism from
the Alzheimer’s Disease Neuroimaging Initiative:
Implications for Clinical Trials,” American Neurological
Association Annual Meeting, 2007.
- B. W.
Jones, R. E. Marc, C. B. Watt, K. Kinardi, D. DeMill, J.H. Yang, T.
Tasdizen, P. Koshevoy, E. Jurrus and R. T. Whitaker, “Structure and
Function of Microneuromas in Retinal Remodeling,” The
Association for Research in Vision and Ophthalmology (ARVO) abstract,
2007.
- Won-Ki
jeong, T. Tasdizen and Ross T. Whitaker, “Feature Preserving Smoothing of Height
Field Data using Multigrid Solver on GPU,” Proceedings of ACM
Workshop on General Purpose Computing on Graphics Processors, 2004.
- J. Zhou,
D. P. Lopresti and T. Tasdizen, “Finding Text in Color
Images,” SPIE Document Recognition V, April 1998.
- Zhibin
Lei, T. Tasdizen and David B. Cooper, “Object Signature
Curve and Invariant Shape Patches for Geometric Indexing into Pictorial
Databases,” Multimedia Storage and Archiving Systems II, SPIE
International Symposium and Education Program on Voice, Video and Data
Communications, November 1997.
Ph.D.
Dissertation
Advisor:
David B. Cooper
Robust
And Repeatable Fitting of Implicit Polynomial Curves to Point Data
Sets and to Intensity Images, download
as compressed postscipt file
Technical
Reports
- P.A. Koshevoy, T. Tasdizen, R.T. Whitaker.
“Automatic Assembly of TEM
Mosaics and Mosaic Stacks Using Phase Correlation,”
UUSCI-2007-004, University of Utah, 2007.
- Suyash P. Awate, T.
Tasdizen and Ross T. Whitaker, “Adaptive,
Nonparametric Markov Modeling
for Unsupervised, MRI Brain Tissue Classification,”
UUSCI-2006-008, University of Utah, 2006
- Suyash P. Awate, T.
Tasdizen and Ross T. Whitaker, ”Unsupervised
Texture Segmentation with
Nonparametric Neighborhood Statistics,” UUSCI-2006-011,
University of Utah, 2006
- Pavel A. Koshevoy, T. Tasdizen and Ross T.
Whitaker, “Implementation of an
Automatic
Slice-to-Slice Registration Tool,” UUSCI-2006-018, University
of Utah, 2006
- Pavel A. Koshevoy, T. Tasdizen and Ross T.
Whitaker, “Implementation of an
Automatic Image
Registration Tool,” UU-SCI-2006-020, University of Utah, 2006
- T. Tasdizen,
Ross T. Whitaker, Robert E. Marc and Bryan W. Jones, “Automatic Correction of Non-uniform
Illumination in Transmission Electron Microscopy Images,”
UUSCI-2005-008, University of Utah, 2005
- Suyash P. Awate, T.
Tasdizen and Ross T. Whitaker, “Nonparametric
Statistics of Image
Neighborhoods for Unsupervised Texture Segmentation,”
UUSCI-2005-003, University of Utah, 2005
- T. Tasdizen
and Ross T. Whitaker, “An
Efficient, Geometric Multigrid Solver for the Anisotropic Diffusion
Equation in Two and Three Dimensions,” UUSCI-2004-002,
University of Utah, 2004
- T. Tasdizen,
David M. Weinstein and James N. Lee, “Automatic Tissue Classification for the
Human Head from Multispectral MRI,” UUSCI-2004-001,
University of Utah, 2004
- T. Tasdizen
and Ross T. Whitaker, “Cramer-Rao
Bounds for Nonparametric Surface Reconstruction from Range Data,”
UUCS-03-006, University of Utah, 2003.
- T. Tasdizen
and Ross T. Whitaker, “Anisotropic
Diffusion of Surface Normals for Feature Preserving Surface
Reconstruction,” UUCS-03-007, University of Utah, 2003.
- T. Tasdizen and
Ross T. Whitaker, “Higher-order
nonlinear priors for surface reconstruction,” UUCS-02-016,
University of Utah, 2002.
- T. Tasdizen,
Ross T. Whitaker, Paul Burchard and Stanley Osher, “Geometric Surface Processing via Normal
Maps,” UUCS-02-03, University of Utah, 2002. Also UCLA-CAM
report 02-56, University of California at Los Angeles. 2002.
- T. Tasdizen,
Senem Velipasalar and David B. Cooper, “Shape Based Similarity
Measures for Image Retrieval,” SHAPE-TR-2001-03, SHAPE Lab, Brown
University, 2001.
- T. Tasdizen,
Jean-Philippe Tarel and David B. Cooper, “Improving the Stability
of Algebraic Curves for Applications,” LEMS Technical Report-176,
Brown University, 1998
- Zhibin Lei, T.
Tasdizen and David B. Cooper, “PIMs and Invariant Parts for
Shape Recognition,” LEMS Technical Report-163, Brown University