Journal Publications

  1. L. Hogrebe, A. R.C. Paiva, E. Jurrus, C. Christensen, M. Bridge, J.R. Korenberg, P. R. Hof, B. Roysam, T. Tasdizen, Serial Section Registration of Axonal Confocal Microscopy Datasets for Long Range Neural Circuit Reconstruction, in preparation.
  2. N. Ramesh, B. J. Dangott, M. Salama and T. Tasdizen, Segmentation and Two-Step Classification of White Blood Cells in Peripheral Blood Smear, in preparation.
  3. E. Jurrus, S. Watanabe, A. R. C. Paiva, M. Ellisman, E. M. Jorgensen and T. Tasdizen, ”Neuron Reconstruction from Electron Microscopy Images,” submitted to Neuroinformatics.
  4. S. K. Iyer, T. Tasdizen and E. V. R. DiBella, Edge Enhanced Spatio-Temporal Constrained Reconstruction of Undersampled Dynamic Contrast Enhanced Radial MRI, submitted.
  5. M. L. Berlanga, S. Phan, E. A. Bushong, S. Lamont, S. Wu, O. Kwon, B. S. Phung, M. Terada, T. Tasdizen, E. Martone and M. H. Ellisman, ”Three-dimensional reconstruction of serial mouse brain sections using high-resolution large-scale mosaics,” Frontiers in Neuroscience Methods, March 2011.
  6. J. R. Anderson, B. W. Jones, C. B. Watt, M. V. Shaw, J.-H. Yang, D. DeMill, J. S. Lauritzen, Y. Lin, K. D. Rapp, D. Mastonarde, P. Koshevoy, B. Grimm, T. Tasdizen, R. Whitaker and R. E. Marc, Exploring the Retinal Connectome, Molecular Vision, 17:355-379, February 2011.
  7. T. Tasdizen, P. Koshevoy, B. C. Grimm, J. R. Anderson, B. W. Jones, C. B. Watt, R. T. Whitaker and R. E. Marc, ”Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy,” Journal of Neuroscience Methods, 193(1), 132-44, 2010.
  8. S. Gerber, T. Tasdizen, T. Fletcher, S. Joshi and R. T. Whitaker, Manifold Modeling for Brain Population Analysis, Medical Image Analysis, Volume 14, Issue 5, Special Issue on the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), October 2010, Pages 643-653. Best paper of the special issue award.
  9. G. Adluru, T. Tasdizen, M. Schabel and E. V. R. DiBella, ”Reconstruction of 3D Dynamic Contrast Enhanced MRI using Non-Local Means,” Journal of Magnetic Resonance Imaging, 32(5), 1217-27, 2010.
  10. E. Jurrus, A. R. C. Paiva, S. Watanabe, J. R. Anderson, B. W. Jones, R. T. Whitaker, E. M. Jorgensen, R. E. Marc and T. Tasdizen, Detection of neuron membranes in electron microscopy images using a serial neural network architecture, Medical Image Analysis, 14:6, 770-83, 2010
  11. J. R. Anderson, B. C. Grimm, S. Mohammed, B.W. Jones, T. Tasdizen, J Spaltenstein, P. Koshevoy, R. Whitaker and R.E. Marc, ”The Viking Viewer: Scalable Multiuser Annotation and Summarization of Large Volume Datasets,” Journal of Microscopy, 241(1), 13-28, 2010.
  12. C. Schlimper, O. Nemitz, U. Dorenbeck, J. Scorzin, R. Whitaker, T. Tasdizen, M. Rumpf and K. Schaller, ”Restoring three-dimensional magnetic resonance angiography images with mean curvature motion,” Neurological Research, vol. 32, no. 1, pp. 87-93, February 2010.
  13. T. Tasdizen, ”Principal Neighborhood Dictionaries for Non-local Means Image Denoising,” IEEE Transactions on Image Processing, vol. 18, no. 12., pp. 2649-60, December 2009. Top 3rd accessed paper in IEEE Xplore during November 2009.
  14. J.R. Anderson, B. W. Jones, J-H Yang, M.V. Shaw, C.B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U V, R. Whitaker, D. Mastronarde , T. Tasdizen, R.E. Marc. A Computational Framework for Ultrastructural Mapping of Neural Circuitry, PLoS Biology, March, vol. 7, no. 3, pp. e74, 2009.
  15. J. S. Preston, T. Tasdizen, C. M. Terry, A. K. Cheung and R. M. Kirby, Using the Stochastic Collocation Method for the Uncertainty Quantification of Drug Concentration due to Depot Shape Variability, IEEE Trans. Biomedical Engineering, Volume 56, no 3, pp. 609-620, March 2009.
  16. E. Jurrus, M. Hardy, T. Tasdizen, P. T. Fletcher, P. Koshevoy, C.-B. Chien, W. Denk and R. Whitaker, Axon tracking in Serial Block-Face Scanning Electron Microscopy, Medical Image Analysis, Volume 13, Issue 1, Pages 180-188, February 2009.
  17. N. L. Foster, A. Y. Wang, T. Tasdizen, P. T. Fletcher, J. M. Hoffman and R. A. Koeppe, Realizing the potential of positron emission tomography wuth F-fluorodeoxyglucose to improve the treatment of Alzheimer's disease, The Journal of the Alzheimer's Association, Vol 4:1, Suppl. 1, Pages 29-36, 2008.
  18. Ganesh Adluru, Suyash P. Awate, T. Tasdizen, Ross T. Whitaker and Edward V. R. DiBella, “Temporally Constrained Reconstruction of Dynamic Cardiac Perfusion MRI,” Magnetic Resonance in Medicine, Vol 57, Pages 1027-1036, 2007.
  19. Oliver Nemitz, T. Tasdizen, Martin Rumpf and Ross T. Whitaker, “Anisotropic Curvature Motion for Structure Enhancing Smoothing of 3D MR Angiography Data,” Journal of Mathematical Imaging and Vision, Vol 7, Num 3, Pages 217-229, 2007.
  20. Suyash P. Awate, T. Tasdizen, Norman L. Foster and Ross T. Whitaker, “Adaptive, Nonparametric Markov Modeling for Unsupervised, MRI Brain-Tissue Classification,” Medical Image Analysis, Vol. 10, Num. 5, Pages 726-739, 2006.
  21. T. Tasdizen and Ross T. Whitaker, “Higher-order Nonlinear Priors for Surface Reconstruction,” IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 26, Num. 7, Pages 878-891, July 2004.
  22. T. Tasdizen, Ross T. Whitaker, Paul Burchard and Stanley Osher, “Geometric Surface Processing via Normal Maps,” ACM Transactions on Graphics, Vol. 22, Num. 4, Pages1012-1033, October 2003.
  23. T. Tasdizen, Jean-Philippe Tarel and David B. Cooper, “Improving the Stability of Algebraic Curves for Applications,” IEEE Transactions on Image Processing, Vol. 9, Num. 3, Pages405-416, March 2000.
  24. T. Tasdizen, Lale Akarun and Cem Ersoy, “Color Quantization with Genetic Algorithms,” Signal Processing: Image Communication, Vol. 12, Pages 49-57, January 1998.

Peer reviewed Conference and Workshop Publications

  1. S. M. Seyedhosseini, R. Kumar, E. Jurrus, R. Guily, M. Ellisman, H. Pfister and T. Tasdizen, ”Detection of Neuron Membranes in Electron Microscopy Images using Multi-scale Context and Radon-like Features,” MICCAI 2011.
  2. S. M. Seyedhosseini, A. R. C. Paiva and T. Tasdizen, ”Fast AdaBoost Training using Weighted Novelty Selection,” International Joint Conference on Neural Networks 2011.
  3. Z. Leng, J. Korenberg, B. Roysam and T. Tasdizen, ”A Rapid 2-D Centerline Extraction Method Based On Tensor Voting,” IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, 2011.
  4. L. Hogrebe, A. Paiva, E. Jurrus, C. Christensen, M. Bridge, J. Korenberg and T. Tasdizen, ”Trace Driven Registration Of Neuron Confocal Microscopy Stacks,” IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, 2011.
  5. A. R. C. Paiva and T. Tasdizen, ”Detection of Salient Image Points using Manifold Structure,” Int. Conf Pattern Recognition (ICPR) 2010.
  6. A. R. C. Paiva, E. Jurrus and T. Tasdizen, ”Using Sequential Context for Image Analysis,” Int. Conf Pattern Recognition (ICPR) 2010.
  7. G Adluru, T. Tasdizen, R. T. Whitaker and E. DiBella, ”Improving Undersampled MRI Reconstruction Using Non-Local Means,” Int. Conf Pattern Recognition (ICPR) 2010.
  8. S. M. Seyedhosseini, A. R. C. Paiva and T. Tasdizen, ”Image Parsing with a Three-State Series Neural Network Classifier,” Int. Conf Pattern Recognition (ICPR) 2010.
  9. S. K. Iyer, E. DiBella, T. Tasdizen, ”Edge enhanced spatio-temporal constrained reconstruction of undersampled dynamic contrast enhanced radial MRI,” IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, 2010.
  10. A. Paiva and T. Tasdizen, ”Fast semi-supervised image segmentation by novelty selection,” ICASSP 2010.
  11. E. Jurrus, A. R. C. Paiva, S. Watanabe, R. Whitaker, E. M. Jorgensen and T. Tasdizen, ”Serial Neural Network Classifier for Membrane Detection using a Filter Bank,”  Microscopic Image Analysis with Applications in Biology, 2009.
  12. S. Gerber, T. Tasdizen and R. T. Whitaker, ”Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds,”  ICCV 2009.
  13. S. Gerber, T. Tasdizen, S. Joshi and R. T. Whitaker, ”On the Manifold Structure of the Space of Brain Images,” MICCAI 2009.
  14. K.. U. Venkataraju, A. Paiva, E. Jurrus. T. Tasdizen, ”Automatic Markup of Neural Cell Membranes using Boosted Decision Stumps,” IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, 2009
  15. J. Anderson, B. Jones, J. H. Yang, M. Shaw, C. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, K. U. Venkataraju, R. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc, ”Ultrastructural mapping of neural circuitry: A computational framework,” IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, 2009.
  16. T. Tasdizen , E. Jurrus and R. T. Whitaker, Non-uniform Illumination Correction in Transmission Electron Microscopy, MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, 2008.
  17. T. Tasdizen , Principal Components for Non-Local Means Image Denoising, Proceedings of the IEEE International Conference on Image Processing, 2008.
  18. N. Sadeghi, N. L. Foster, A. Y. Wang, A. P. Lieberman and T. Tasdizen , Automatic Classification of Alzheimer's Disease vs. Frontotemporal Dementia: A Spatial Decision Tree Aprroach with FDG-PET, Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Pages 408-411, 2008.
  19. E. Jurrus, R.T. Whitaker, B. W. Jones, R. E. Marc and T. Tasdizen , An Optimal-Path Approach for Neural Circuit Reconstruction, Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Pages 1609-1612, 2008.
  20. S. Gerber, T. Tasdizen and R. Whitaker, “Robust Non-linear Dimensionality Reduction using Successive 1-Dimensional Laplacian Eigenmaps,” in Proceedings of International Conference on Machine Learning (ICML), Pages 281-288, 2007
  21. T. Tasdizen, Pavel A. Koshevoy, Bryan W. Jones, Ross T. Whitaker and Robert E. Marc, “Assembly of Three-Dimensional Volumes from Serial-Section Transmission Electron Microscopy,” Proceedings of MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, pp 10-17, October 2006.
  22. Elizabeth Jurrus, T. Tasdizen, Pavel A. Koshevoy, Melissa Hardy, Chi-Bin Chien, Ross T. Whitaker, Winfred Denk, “Axon Tracking in Serial Block-Face Scanning Electron Microscopy” Proceedings of MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, Pages 114-119, October 2006.
  23. Suyash P. Awate, Edward V. R. DiBella, T. Tasdizen and Ross Whitaker, ”Model-Based Image Reconstruction for Dynamic Cardiac Perfusion MRI from Sparse Data,” IEEE Int. Conf. Engineering and Biology Society (EMBC), Pages 936-941, 2006.
  24. Suyash P. Awate, T. Tasdizen and Ross T. Whitaker, “Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,” European Conference on Computer Vision (ECCV), 2006.
  25. Joe M. Kniss, Robert Van Uitert, Abe Stephens, Guo-Shi Li, T. Tasdizen and Charles Hansen, “Statistically Quantitative Volume Visualization,” Proceedings of IEEE Visualization, 2006.
  26. T. Tasdizen, Suyash P. Awate, Ross T. Whitaker and Norman L. Foster, “MRI Tissue Classification with Neighborhood Statistics: A Nonparametric, Entropy-Minimizing Approach,” Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), Vol. 2, Pages 517-525, 2005.
  27. T. Tasdizen, Ross T. Whitaker, Robert E. Marc and Bryan W. Jones, “Enhancement of Cell Boundaries in Transmission Electron Microscopy Images,” Proceedings of International Conference on Image Processing (ICIP), Vol. 2, Pages 129-132, September 2005.
  28. Leo Grady and T. Tasdizen, “A Geometric Multigrid Approach to Solving the 2D Inhomogeneous Laplace Equation with Internal Drichlet Boundary Conditions,” Proceedings of International Conference on Image Processing (ICIP), Vol. 2, Pages 642-645, September 2005.
  29. G. Kindlmann, A. L. Alexander, M. Lazar, J. Lee, T. Tasdizen and R. T. Whitaker, “An Algorithm for Moment-Based Global Registration of Echo Planar Diffusion-Weighted Images,” Proceedings of 12th Annual ISMRM, Pages 2200, 2004.
  30. T. Tasdizen and Ross T. Whitaker, “Anisotropic Diffusion of Surface Normals for Feature Preserving Surface Reconstruction”, Proceedings of 4th International Conference on 3D Digital Imaging and Modeling, Pages 353-360, October 2003.
  31. T. Tasdizen and Ross T. Whitaker, “Cramer-Rao Bounds for Nonparametric Surface Reconstruction from Range Data,” Proceedings of 4th International Conference on 3D Digital Imaging and Modeling, Pages 70-77, October 2003.
  32. T. Tasdizen and Ross T. Whitaker, “Feature Preserving Variational Smoothing of Terrain Data,” 2nd International IEEE Workshop on Variational, Geometric and Level Set Methods in Computer Vision, October 2003.
  33. Gordon Kindlmann, Ross T. Whitaker, T. Tasdizen and Torsten Miller, “Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications,” Proceedings of IEEE Visualization, Pages 513-520, October 2003. [HTML]
  34. Simon Premoze, T. Tasdizen, James Bigler, Aaron Lefohn and Ross T. Whitaker, “Particle-Base Simulation of Fluids,” Proceedings of Eurographics, Pages 401-410, September 2003. [HTML]
  35. M. Barzohar, L. Preminger. T. Tasdizen and David B. Cooper, “Robust Method for Completely Automatic Aerial Detection of Occluded Roads with New Initialization,” Proceedings of SPIE – Vol. 4820, Infrared Technology and Applications XXVII, Pages 688-698, January 2003.
  36. T. Tasdizen, Ross T. Whitaker. Paul Burchard and Stanley Osher, “Geometric Surface Smoothing via Anisotropic Diffusion of Normals” Proceedings of IEEE Visualization, Pages 125-132, October 2002.
  37. T. Tasdizen and David B. Cooper, “Boundary Estimation from Intensity/Color Images with Algebraic Curve Models,” Proceedings of 15th IEEE Computer Society International Conference on Pattern Recognition (ICPR), Vol. 1, Pages 225-228, September 2000, Best Student Paper Award Honorable Mention.
  38. T. Tasdizen, Jean-Philippe Tarel and David B. Cooper, “Algebraic Curves that Work Better,” Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vol. 2, Pages35-41, June 1999.
  39. Zhibin Lei, T. Tasdizen and David B. Cooper, “PIMS and Invariant Parts for Shape Recognition,” Proceedings of 6th IEEE Computer Society International Conference on Computer Vision (ICCV), January 1997.
  40. Lale Akarun, T. Tasdizen and Cem Ersoy, “Genetik Algoritmalarla Renk Nicemlemesi,” SIU Bildiriler Kitabi, April 1997, in Turkish.

Abstracts

  1. Shushruth S, Tasdizen T, Ichida JM, Angelucci A (2011). Surround signals in V1 evoked by natural images carry image specific information. Grand Challenges in Neural Computation, Santa Fe, NM
  2. J. Anderson, B. W. Jones, D. Mastronarde, P. Koshevoy, C.B. Watt, J. Yang, T. Tasdizen, R. Whittaker, J. Spaltenstein, R.E. Marc, ”The Retinal Connectome: Networks in the Amacrine Cell Layer”, The Association for Research in Vision and Ophthalmology (ARVO), 2009.
  3. E. Jurrus, T. Tasdizen , S. Watanabe, M. W. Davis, E. M. Jorgensen and R. T. Whitaker, Semi-automated reconstruction of the neuromuscular junctions in C. elegans, MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, 2008.
  4. N. L. Foster, A. Y. Wang, T. Tasdizen , K. Chen, W. Jagust, R. A. Koeppe, E. Reiman, M. W. Weiner and S. Minoshima, Cerebral Hypometabolism suggesting Frontotemporal Dementia in an Alzheimer's Disease Clinical Trial, American Academy of Neurology, 2008.
  5. T. Fletcher, A. Wang, T. Tasdizen, K. Chen, W. Jagust, R. Koeppe, E. Reiman, M. Weiner, S. Minoshima, N. Foster, ”Variability of Normal Cerebral Glucose Metabolism from the Alzheimer’s Disease Neuroimaging Initiative: Implications for Clinical Trials,” American  Neurological Association Annual Meeting, 2007. 
  6. B. W. Jones, R. E. Marc, C. B. Watt, K. Kinardi, D. DeMill, J.H. Yang, T. Tasdizen, P. Koshevoy, E. Jurrus and R. T. Whitaker, “Structure and Function of Microneuromas in Retinal Remodeling,” The Association for Research in Vision and Ophthalmology (ARVO) abstract, 2007.
  7. Won-Ki jeong, T. Tasdizen and Ross T. Whitaker, “Feature Preserving Smoothing of Height Field Data using Multigrid Solver on GPU,” Proceedings of ACM Workshop on General Purpose Computing on Graphics Processors, 2004.
  8. J. Zhou, D. P. Lopresti and T. Tasdizen, “Finding Text in Color Images,” SPIE Document Recognition V, April 1998.
  9. Zhibin Lei, T. Tasdizen and David B. Cooper, “Object Signature Curve and Invariant Shape Patches for Geometric Indexing into Pictorial Databases,” Multimedia Storage and Archiving Systems II, SPIE International Symposium and Education Program on Voice, Video and Data Communications, November 1997.
Ph.D. Dissertation
Advisor: David B. Cooper
Robust And Repeatable Fitting of Implicit Polynomial Curves to Point Data Sets and to Intensity Images, download as compressed postscipt file

Technical Reports