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Scientific Software Environments

Software at the SCI Institute is developed in close collaboration with application users to satisfy real needs within their research communities. We use a robust, yet agile software process that is fully open-source to produce software environments that integrate leading-edge algorithms in image processing, scientific visualization, and scientific computing. Software products include the SCIRun scientific software problem solving environment for geometric modeling, simulation, and visualization; BioPSE for biomedical computing and visualization; Uintah, designed for combustion, computational fluid dynamics, and mechanical modeling which is implemented on large-scale and distributed with shared memory architectures, map3d, an application to display and edit complex, three-dimensional surface models and associated scalar, time-dependent data; and VisTrails, providing data and process management support for exploratory computational tasks. Recently, the SCI Institute has been developing powerful, stand-alone applications. These software applications include ImageVis3d (formerly BioImage), a high performance volume rendering tool for image and other scalar volume data, BioTensor, a program that processes and visualizes diffusion tensor images, Seg3d, for volume segmentation and image processing, BioMesh3D, for creating tetrahedral and hexahedral meshes; and FusionViewer, for visualizing 3D scalar and vector magnetic fusion data.

Summer Course on Image-based Biomedical Modeling
July 14-24, 2014

The SCI Institute is offering a Summer Course next summer in Image Based Biomedical Modeling. This two-week course includes hands-on tutorials on software tools developed at the SCI Institute. To find out more, check the IBBM Website.

 

Available Software
FEBio
PreView
PostView
FluoRender
Uintah
FiberViewer
AtlasWerks
VisTrails
NCRToolset
HDVis
ElVis
EpiCanvas
ExoshapeAccel
inSite
STCR
CHM
MulteeSum
Pathline
MizBee
Deformetrica
Afront
Vispack
Teem
CIBC ToolBench
SCIRun
BioMesh3D
Seg3D
ImageVis3D
ShapeWorks
ShapeWorks Client
map3d
Cleaver
Datasets
NCRR/CIBC Dataset Archive
CT Data Archive