Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2003


R. Borgo, R. Scopigno, P. Cignoni, V. Pascucci. “A Progressive Subdivision Paradigm (PSP),” In Proceedings of the Conference on Vision, Modeling and Visualization 2003 (VMV-03), Note: UCRL-PROC-208557, Edited by T. Ertl and B. Girod and G. Greiner and H. Niemann and H.-P. Seidel and E. Steinbach and R. Westermann, Aka GmbH, Berlin, Germany pp. 441--450. Nov, 2003.



P.-T. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci. “A Multi-resolution Data Structure for Two-dimensional Morse Functions,” In Proceedings of IEEE Conference on Visualization (VIS-03), Note: UCRL-JC-154014, pp. 139--146. October, 2003.



K. Cole-McLaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Loops in Reeb Graphs of 2-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-JC-151933, pp. 344--350. June, 2003.



K. Cole-McLaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Loops in Reeb Graphs of 2-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-JC-151933, pp. 344--350. June, 2003.



H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci. “Morse Complexes for Piecewise Linear 3-Manifolds,” In Proceedings of the 19th ACM Symposium on Computational Geometry, Note: UCRL-PROC-208698, pp. 361--370. June, 2003.



E. Lamar, V. Pascucci. “A Multi-Layered Image Cache For Scientific Visualization,” In Proceedings of IEEE Symposium on Parallel and Large-Data Visualization and Graphics, Note: UCRL-JC-152963, pp. 61--68. October, 2003.



C. Nuber, E.C. LaMar, V. Pascucci, B. Hamann, K.I. Joy. “Using Graphs for Fast Error Term Approximation of Time-varying Datasets,” In Proceedings of Eurographics VisSym'03 (Data Visualization 2003), Note: UCRL-JC-151965, Edited by Georges-Pierre Bonneau AND Stefanie Hahmann AND Charles D. Hansen, Association for Computing Machinery, New York, New York 2003.



A. Paoluzzi, V. Pascucci, M. Vicentino, C. Baldazzi, S. Protuesi. “Geometric Programming for Computer Aided Design,” John Wiley & Sons, June, 2003.



V. Pascucci, K. Cole-McLaughlin. “Parallel Computation of the Topology of Level Sets,” In Algorithmica, Vol. 38, No. 1, pp. 249--268. October, 2003.



V. Pascucci, D.E. Laney, R. Frank, G. Scorzelli, L. Linsen, B. Hamann, F. Gygi. “Real-Time Monitoring of Large Scientific Simulations,” In Proceedings of the 18-th annual ACM Symposium on Applied Computing, Melbourne, Florida, Note: UCRL-JC-151094, pp. 194--198. March, 2003.



V. Pascucci, R. J. Frank. “Hierarchical Indexing for Out-of-Core Access to Multi-Resolution Data,” In Mathematics and Visualization, Note: UCRL-JC-140581, Edited by G.Farin and B. Hamann and H. Hagen, Springer-Verlag, pp. 225--241. 2003.
DOI: 10.1007/978-3-642-55787-3_14


2002


B. Gregoski, M. Duchaineau, P. Lindstrom, V. Pascucci, K. Joy. “Interactive View-Dependent Rendering of Large Isosurfaces,” In Proceedings of IEEE Conference on Visualization (VIS-02), Boston, MA, Note: UCRL-JC-146819, pp. 475--482. October, 2002.



P. Lindstrom, V. Pascucci. “Terrain Simplification Simplified: A General Framework for View-Dependent Out-of-Core Visualization,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 8, No. 3, Note: UCRL-JC-147847, pp. 239--254. July-September, 2002.



L. Linsen, V. Pascucci, M.A. Duchaineau, B. Hamann, K.I. Joy. “Hierarchical Representation of Time-varying Volume Data with 4th-root-of-2 Subdivision and Quadrilinear B-spline Wavelets,” In Proceedings of Tenth Pacific Conference on Computer Graphics and Applications, Beijing, China, Note: UCRL-JC-151063, pp. 346--355. 2002.



V. Pascucci, K. Cole-McLaughlin. “Efficient Computation of the Topology of Level Sets,” In Proceedings of IEEE Conference on Visualization (VIS-02), Boston, MA, Note: UCRL-JC-149277, pp. 187--194. October, 2002.



V. Pascucci. “Slow Growing Subdivision (SGS) in Any Dimension: Towards Removing the Curse Of Dimensionality,” In Proceedings of Eurographics 2002, Saabruken, Germany, Note: UCRL-ID-144257, pp. 451--460. September, 2002.



V. Pascucci. “Slow Growing Volumetric Subdivision for 3D Volumetric Data,” In SIGGRAPH 2002 Technical Sketches, 2002.


2001


C. Guerra, V. Pascucci. “Finding Line Segments with Tabu Search,” In IEICE Transactions on Information & Systems, Vol. E84-D, No. 12, pp. 1739-1744. December, 2001.



P. Lindstrom, V. Pascucci. “Visualization of Large Terrains Made Easy,” In Proceedings of the 12th Annual IEEE Conference on Visualization (VIS-01), San Diego, CA, Note: UCRL-JC-144753, IEEE Computer Society, pp. 363--370, 574. October 21-26, 2001.



V. Pascucci, R.J. Frank. “Global Static Indexing for Real-time Exploration of Very Large Regular Grids,” In Proceedings of Supercomputing 2001, Note: UCRL-JC-144754, ACM, Nov, 2001.