April 2007 Commit Log

Number of Commits:
107
Number of Active Developers:
13
harman 2007-04-30 15:50 Rev.: 37454

Global variable name change: material_ps -> restart_prob_spec

ModelMaker, ModelFactory, ICE: renamed additional variable to reflect true meaning

106 lines of code changed in 71 files:

luitjens 2007-04-30 13:26 Rev.: 37453

Try -lmpich first if that does not work then try -lmpich -lpmpich

35 lines of code changed in 2 files:

worthen 2007-04-30 12:55 Rev.: 37452

provide a way to get the filename out of a problemSpecReader

4 lines of code changed in 2 files:

worthen 2007-04-30 11:15 Rev.: 37451

restore graphview and fix its compilation errors

5 lines of code changed in 3 files:

harman 2007-04-28 15:23 Rev.: 37446

mimic logic used in pscp2 to generate file list

3 lines of code changed in 1 file:

kuzimmer 2007-04-27 00:11 Rev.: 37441

Add the ability to color patches according to processor number.

56 lines of code changed in 4 files:

guilkey 2007-04-26 17:37 Rev.: 37433

Added active stress option.

13 lines of code changed in 3 files:

guilkey 2007-04-26 17:35 Rev.: 37432

Added active stress option (in February, apparently forgot to check it in...)

11 lines of code changed in 3 files:

luitjens 2007-04-26 14:00 Rev.: 37429

Added getNumProcs to DataArchive

13 lines of code changed in 2 files:

worthen 2007-04-26 13:19 Rev.: 37427

Throw an exception when uncompress fails

1 lines of code changed in 1 file:

guilkey 2007-04-26 13:02 Rev.: 37426

Added some usage information about explicit and implicit MPM

2 lines of code changed in 1 file:

kuzimmer 2007-04-26 13:01 Rev.: 37425

add a transform to allow the patches to be shifted.

54 lines of code changed in 3 files:

luitjens 2007-04-26 10:14 Rev.: 37422

Modified output to put more appropriate labels on what is being output.

9 lines of code changed in 1 file:

luitjens 2007-04-26 09:21 Rev.: 37421

Output the real volume in addition to the cell volume with the SCI_DEBUG
BNRStats

10 lines of code changed in 2 files:

worthen 2007-04-25 16:40 Rev.: 37416

Query the grid inside the timestep loop when querying multiple timesteps.

3 lines of code changed in 1 file:

dav 2007-04-25 16:26 Rev.: 37415

James Bigler fixed the output of the vector data. Thanks James!

89 lines of code changed in 1 file:

luitjens 2007-04-25 11:41 Rev.: 37413

Removed a race condition in the BNR regridder.

18 lines of code changed in 3 files:

worthen 2007-04-25 11:00 Rev.: 37412

Disable changing the uda name mid-run (like in a switcher)

9 lines of code changed in 1 file:

jas 2007-04-25 09:01 Rev.: 37410

Reduce printed output of bc data.

11 lines of code changed in 2 files:

harman 2007-04-25 08:35 Rev.: 37409

outputProblemSpec()
added d_testForNegTemps_mpm to output spec in <MPM> section

problemSetup()
-added logic to use the correct prob_spec when looking for the
<MPM> block

13 lines of code changed in 1 file:

luitjens 2007-04-24 17:32 Rev.: 37406

Fixed a bug in the regridder where some processors might
not post a broadcast.

4 lines of code changed in 1 file:

worthen 2007-04-24 17:27 Rev.: 37405

Show material for which var copy failed

1 lines of code changed in 1 file:

worthen 2007-04-24 16:42 Rev.: 37404

Call ModelMaker->makeModels with the right input file when using the Switcher

3 lines of code changed in 1 file:

harman 2007-04-24 15:56 Rev.: 37403

added some more cout_doing statements

10 lines of code changed in 1 file:

kuzimmer 2007-04-24 15:47 Rev.: 37402

update uda2nrrd so that AMR levels can be combined into a single nrrd

615 lines of code changed in 1 file:

luitjens 2007-04-24 09:46 Rev.: 37397

Fixed compiler warnings.

Only bullet proof if assertions are greater than or equal to 3.

6 lines of code changed in 1 file:

jas 2007-04-24 08:59 Rev.: 37394

Fix restart when using the switcher component.

104 lines of code changed in 7 files:

jas 2007-04-24 08:54 Rev.: 37393

Change argument list for switchInitialize and add outputPS.

6 lines of code changed in 1 file:

jas 2007-04-24 08:51 Rev.: 37392

Fix compiler warning.

1 lines of code changed in 1 file:

worthen 2007-04-23 19:27 Rev.: 37388

Some small things:
fix windows compile
when sus goes down successfully, print out the last timestep it did
when there is a taskgraph cycle, print out the entire cycle
print out the number of procs (and the number of bits) from a run in the timestep.xml:meta section

36 lines of code changed in 5 files:

luitjens 2007-04-23 17:21 Rev.: 37387


removed accidently commited spew

1 lines of code changed in 1 file:

luitjens 2007-04-23 15:36 Rev.: 37386

Fixed a couple bugs that would cause the simulation to run with only a
fraction of the processors until a regrid when restarting when the uda was output using
nperproc.

9 lines of code changed in 1 file:

harman 2007-04-23 14:06 Rev.: 37384

added Changwei's changes to heat exchange. To activate uncomment

#define CHANGWEI

38 lines of code changed in 1 file:

borodai 2007-04-23 13:59 Rev.: 37383

Based ob Bryan's idea, make MPMArches actually work.

6 lines of code changed in 1 file:

luitjens 2007-04-23 13:52 Rev.: 37382

Only compute the number of particles crossing the boundaries when the SCI_ASSERTION_LEVEL is
greater than or equal to 3.

2 lines of code changed in 1 file:

luitjens 2007-04-23 13:48 Rev.: 37381

Verfiy checksome is now only run if the SCI_ASSERTION_LEVEL is greater
than 3.

2 lines of code changed in 1 file:

worthen 2007-04-23 13:43 Rev.: 37380

Revert old commit and check in correct mpm scheduler fix

6 lines of code changed in 2 files:

worthen 2007-04-23 13:33 Rev.: 37379

Have MPMArches give mpm the scheduler port

2 lines of code changed in 1 file:

damevski 2007-04-23 11:19 Rev.: 37378

Added a test for MPI Service.

221 lines of code changed in 7 files:

damevski 2007-04-23 11:18 Rev.: 37377

Fixed small bug in preprocessing directives.

2 lines of code changed in 1 file:

luitjens 2007-04-23 08:52 Rev.: 37376

Fixed a bug in the hybrid load balancer/regridder.

6 lines of code changed in 1 file:

banerjee 2007-04-23 00:02 Rev.: 37375

Truncate the number of Maxwell elements only if time-temperature superposition is turned on.

5 lines of code changed in 1 file:

harman 2007-04-20 14:56 Rev.: 37371

Dust off non-reflective BCs
ICE.cc
actuallyInitialize()
- compute the speed of sound, needed by the LODI bcs

LODI2.cc
addRequires_Lodi()
- no longer requiring press_CC from the new_DW.
Just pull press_CC from the DW and use it to compute a gradient.

19 lines of code changed in 2 files:

worthen 2007-04-20 01:37 Rev.: 37364

Fix a few DLB bugs and add some SCI_DEBUG statements

44 lines of code changed in 2 files:

worthen 2007-04-19 17:48 Rev.: 37359

Implement getCosts, with particles, for Regions as well as the current grid (if load balancing independent of regridding).

346 lines of code changed in 2 files:

borodai 2007-04-19 15:53 Rev.: 37358

Fixed spelling.

1 lines of code changed in 1 file:

worthen 2007-04-19 14:05 Rev.: 37357

Fix replace of performance results

0 lines of code changed in 2 files:

borodai 2007-04-19 13:19 Rev.: 37355

Fixed density lag control.

31 lines of code changed in 2 files:

banerjee 2007-04-19 11:32 Rev.: 37353

1) Tested objective rate formulation. Works.
2) Don't allow relaxation times less than the current time step.
Needed when time-temperature superposition is on and
temperature is close to melt temperature.

66 lines of code changed in 1 file:

harman 2007-04-19 10:40 Rev.: 37352

find all text files in the uda and list them first. Now spew files are automatically copied

2 lines of code changed in 1 file:

borodai 2007-04-18 16:17 Rev.: 37351

Added option to save density lag after RK average

44 lines of code changed in 5 files:

damevski 2007-04-18 13:03 Rev.: 37350

Added MPIService.

0 lines of code changed in 2 files:

damevski 2007-04-18 13:02 Rev.: 37349

MPIService added.

228 lines of code changed in 9 files:

borodai 2007-04-17 16:30 Rev.: 37344

Added density lag control.

67 lines of code changed in 2 files:

borodai 2007-04-17 13:55 Rev.: 37340

Fiexed EKT for RK3SSP.

3 lines of code changed in 1 file:

borodai 2007-04-17 11:58 Rev.: 37339

Added density lag computation.

101 lines of code changed in 7 files:

borodai 2007-04-17 10:47 Rev.: 37337

Only print warnings from processor 0.

5 lines of code changed in 1 file:

borodai 2007-04-16 15:23 Rev.: 37334

More EKT work

158 lines of code changed in 7 files:

jas 2007-04-13 22:48 Rev.: 37316

Allocate space for the externalForce and loadCurveID if you have physical
boundary conditions other than pressure or normal force.

25 lines of code changed in 1 file:

worthen 2007-04-13 14:35 Rev.: 37308

add a function such that each component can set itself up when switcher hands off control (since it doesn't get a scheduleInitialize)

30 lines of code changed in 4 files:

borodai 2007-04-13 13:42 Rev.: 37306

Fixed logic.

6 lines of code changed in 1 file:

borodai 2007-04-13 13:15 Rev.: 37305

Forgot this one.

2 lines of code changed in 1 file:

borodai 2007-04-13 13:02 Rev.: 37304

Made task names distinctive.

77 lines of code changed in 12 files:

borodai 2007-04-13 11:31 Rev.: 37302

Fixed task graph compilation for EKT.

10 lines of code changed in 1 file:

jas 2007-04-13 11:09 Rev.: 37300

Add int type for load curve data initialization.

9 lines of code changed in 1 file:

worthen 2007-04-12 23:16 Rev.: 37294

Add 'finalizeTimestep' to Switcher, and move post-timestep switching stuff to it

9 lines of code changed in 2 files:

harman 2007-04-12 23:01 Rev.: 37293

fixed exception message

1 lines of code changed in 1 file:

jas 2007-04-12 20:32 Rev.: 37291

Move reading of the TimestepXML data before doing restartInitialize().

1 lines of code changed in 1 file:

borodai 2007-04-12 15:32 Rev.: 37285

Beggining of EKT correction. Does not work yet.

877 lines of code changed in 45 files:

luitjens 2007-04-12 12:26 Rev.: 37280

Reindented code to use 2 spaces instead of tabs.

Fixed a hang which would occur when the number of patches on any level was less than
the number of processors when using MPM/MPMICE.

260 lines of code changed in 1 file:

luitjens 2007-04-12 12:03 Rev.: 37279

Stripped tabs

209 lines of code changed in 1 file:

jas 2007-04-12 03:15 Rev.: 37273

Add outputProblemSpec, so using the switcher will have the relevant
xml info when needed to restart.

7 lines of code changed in 2 files:

worthen 2007-04-11 20:14 Rev.: 37272

Get DataArchiver to output Stretch Grid coordinates, and the DataArchive to read them into the grid. compare_uda succesfully passes between a run with stretched grids and its restart.

Poisson: Fix a crash with a null grid (advance the DW before compiling the subscheduler).

81 lines of code changed in 3 files:

jas 2007-04-11 17:19 Rev.: 37271

Add the ProblemSpec information for the PhysicalBC to allow restarting.

85 lines of code changed in 27 files:

worthen 2007-04-11 12:32 Rev.: 37267

set p.x as the position var to the scheduler

1 lines of code changed in 1 file:

harman 2007-04-11 10:16 Rev.: 37265

hard coded the initial guess for the surface temperature to 800K

AMR & grabbing initial guesses from the old_dw doesn't work in the Models.

12 lines of code changed in 1 file:

worthen 2007-04-10 23:48 Rev.: 37264

set the scheduler's position var (p.x) at problemSetup time instead of scheduleInitialize time. Avoids seg faults when you need p.x before the scheduler sets it in Scheduler::scheduleParticleRelocation

3 lines of code changed in 5 files:

worthen 2007-04-10 20:38 Rev.: 37263

restore setting sharedState's d_simTime

1 lines of code changed in 1 file:

harman 2007-04-10 14:41 Rev.: 37262

tabs

278 lines of code changed in 5 files:

borodai 2007-04-10 13:09 Rev.: 37261

Fixed normal Arches cases after adding extra scalar.

173 lines of code changed in 1 file:

kuzimmer 2007-04-09 16:10 Rev.: 37260

Changes to allow control of amplitude, viscosity, and p_ref from the GUI. Initial update, more changes to come.

0 lines of code changed in 8 files:

worthen 2007-04-09 14:53 Rev.: 37259

Fix restart problems (where certain varLabels haven't been created yet) by calling sim->problemSetup before dataarchive->restartInitialize

16 lines of code changed in 3 files:

borodai 2007-04-09 12:30 Rev.: 37255

Enabled reacting scalar solve if needed.

75 lines of code changed in 6 files:

luitjens 2007-04-09 11:19 Rev.: 37254

Fixed a bug which would cause incorrect patch sets when using the BNR
regridder with per level refinement ratios and/or per level minimum
patch sizes.

2 lines of code changed in 1 file:

dav 2007-04-06 15:14 Rev.: 37252

Super-optimization (-O3) under gcc 4.1 caused an internal compiler error... however, if I make it a tiny bit easier by expanding the offending line into several different lines, the compiler can swallow it.

11 lines of code changed in 1 file:

jas 2007-04-06 14:11 Rev.: 37250

Interpolated flux values are now correctly scaled.

13 lines of code changed in 4 files:

luitjens 2007-04-06 10:23 Rev.: 37248

Removed workaround because it isn't needed anymore.

0 lines of code changed in 1 file:

worthen 2007-04-06 09:37 Rev.: 37247

Fix a few of the Dataarchive bugs: compare_uda: use the index instead of the time; DataArchive: parse data files on current level only; SimCnt: Call LB::problemSetup after the grid (and dimensionality) have been set up

15 lines of code changed in 4 files:

worthen 2007-04-06 09:31 Rev.: 37246

Add Core-Util to the link line for Uintah-Core-Util

0 lines of code changed in 2 files:

worthen 2007-04-05 15:12 Rev.: 37245

Fix dir for setting up local RTs

0 lines of code changed in 2 files:

worthen 2007-04-05 14:48 Rev.: 37244

Make subsidiary structures members of DataArchive

27 lines of code changed in 1 file:

worthen 2007-04-05 13:29 Rev.: 37243

Change PatchInfo and VarInfo to PatchData and VarData to avoid conflicting with struct names elsewhere in Uintah

14 lines of code changed in 2 files:

luitjens 2007-04-05 12:30 Rev.: 37241

Added some new Tau profile calls

Added a new debugstream called MPI_Barriers. This will call barriers
after many components before the tau timers end (useful for meansure
load imbalance).

Added a work around for a bug introduced in r37229 which caused space
filling curves to attempt to run on 0 dimensions. Full fix should be
coming later.


35 lines of code changed in 5 files:

borodai 2007-04-05 11:08 Rev.: 37240

Fixed the Pr number logic.

22 lines of code changed in 3 files:

borodai 2007-04-04 14:40 Rev.: 37232

Now individual turbulent Prandtl numbers can be specified per scalar equation.
They will override common Prandtl number given in turbulence model if that
number is specified. Common Prandtl number can still be specified in turbulence
model for ease of use and backward compatibility of input files.

102 lines of code changed in 13 files:

worthen 2007-04-04 14:06 Rev.: 37230

forgotten file

88 lines of code changed in 1 file:

worthen 2007-04-04 13:10 Rev.: 37229

DataArchive changes (and to those who use it):
API change - all queries (except those for a range of time values) take the index in the timestep array instead of the time value
internal change - store everything time-related in struct TimeData (which contains Patch properties, material properties, variable properties, and a HashTable of file-reading information)
Don't keep around ProblemSpecPs for the p***.xml datafiles (store what you read from the datafile). This *might* be a tradeoff in favor of memory at the possible cost of performance. I might change this back later if I determine it to be faster at not much of an expense to memory.

Change any function who uses DataArchive to compensate for the changed API, and a few other cosmetic changes.

1057 lines of code changed in 94 files:

borodai 2007-04-04 10:41 Rev.: 37225

Hypre 2.0 fix. Do not supply a residual to Jacoby solver if used as
preconditioner.

0 lines of code changed in 4 files:

worthen 2007-04-04 09:58 Rev.: 37222

Fix windows build

0 lines of code changed in 2 files:

worthen 2007-04-04 09:57 Rev.: 37221

Fix Windows build

0 lines of code changed in 2 files:

harman 2007-04-04 09:34 Rev.: 37220

include *.dat files and input.xml.orig in the list of files to transfer

4 lines of code changed in 1 file:

bigler 2007-04-03 15:26 Rev.: 37217


Fix Fraction for negative whole numbers. Previously they would return
1 for the result instead of 0.

Changed double version of Fraction to cast to 64 bit number (long
long).

Added float version of Fraction.

Added comments for Fraction.

0 lines of code changed in 2 files:

luitjens 2007-04-03 10:54 Rev.: 37215

Also flush cout

1 lines of code changed in 1 file:

jas 2007-04-02 21:59 Rev.: 37214

Compute heat flux values using trig function mappings.

27 lines of code changed in 3 files:

xiongcw 2007-04-02 15:36 Rev.: 37210

minor fix

1 lines of code changed in 1 file:

luitjens 2007-04-02 15:12 Rev.: 37208

Flush the simulation stats each timestep.

1 lines of code changed in 1 file:

jthornoc 2007-04-02 13:18 Rev.: 37207

Added more MMS capability to ARCHES. At this commit, the code seemed to show 2nd order spatial convergence. However, the time step was minimized, not eliminated. The time error and spatial error should be separated in future commits.

2705 lines of code changed in 25 files:

March 2007 »

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