January 2007 Commit Log

Number of Commits:
83
Number of Active Developers:
12
guilkey 2007-01-31 19:42 Rev.: 36562

Adding 3rd Order B-Spline interpolators, generated by Mike Steffen.
These have special treatment at the boundaries, so that lots of extra
cells aren't needed. These are only partially tested so far, the shape
functions seem to work, need to check the gradients.

416 lines of code changed in 5 files:

harman 2007-01-31 12:03 Rev.: 36555

- turn off refluxing of the RHS until we have something working.
- don't push rhs to the ParentNewDW (useful for debugging)
- renamed variable

6 lines of code changed in 1 file:

harman 2007-01-31 11:31 Rev.: 36554

Turned off setting Neumann face-centered velocity boundary conditions. *Shouldn't* need
it.

9 lines of code changed in 1 file:

luitjens 2007-01-29 15:40 Rev.: 36535

Added a class PseudoPatch which is a stripped down version of a patch.
It only contians an high and low point.

89 lines of code changed in 5 files:

luitjens 2007-01-29 15:10 Rev.: 36533

Removed unneed barrier. sus should now run on a single proc without MPI
again.

0 lines of code changed in 1 file:

luitjens 2007-01-26 14:12 Rev.: 36508

Fixed an error message to correctly report the regrid dilation

1 lines of code changed in 1 file:

luitjens 2007-01-25 16:41 Rev.: 36492

Fixed a bug.

3 lines of code changed in 1 file:

luitjens 2007-01-25 16:27 Rev.: 36491

Removed Spew

0 lines of code changed in 1 file:

luitjens 2007-01-25 16:05 Rev.: 36490

Added an additional dilation layer.
Changed the names of the dilation variables.
Implemented a feature allows the user to regrid less at the cost of more
refinement.

180 lines of code changed in 8 files:

worthen 2007-01-25 10:24 Rev.: 36489

Don't require lapack/blas for hypre

2 lines of code changed in 2 files:

luitjens 2007-01-24 16:31 Rev.: 36488

Added the member function asPoint()

4 lines of code changed in 1 file:

harman 2007-01-24 14:40 Rev.: 36482

Updated message on bulletproofing. Give the user feedback on number of triangulated
surfaces read in.

26 lines of code changed in 1 file:

luitjens 2007-01-23 15:25 Rev.: 36464

Use the dimensionality in the shared state.

24 lines of code changed in 2 files:

luitjens 2007-01-23 15:23 Rev.: 36463

Fixed compile error

1 lines of code changed in 1 file:

luitjens 2007-01-23 15:19 Rev.: 36462

Handle detected errors by thowing an exception instead of exiting the
program.

6 lines of code changed in 1 file:

luitjens 2007-01-23 14:53 Rev.: 36460


The number of dimensions and dimensions being used are now stored within
the shared state.

to get the demensionality of the problem do something similar to the
following:

int dims=d_sharedState->getNumDims();

to get the dimensions that are being used do somethign similar to the
following:

int* activeDims = d_sharedState->getActiveDims();

where activeDims is an array specifying which dimensions are used, for
example for a 2d problem where the first dimension is x and the second
dimension is z, activeDims would be the array {0,2}.

33 lines of code changed in 3 files:

luitjens 2007-01-23 13:09 Rev.: 36456

Moved SFC back to ports so the regridder can use it without depending on
the load balancer componenet

3903 lines of code changed in 15 files:

luitjens 2007-01-23 11:25 Rev.: 36454

BNRRegridder needs to be linked with the loadbalancers.

1 lines of code changed in 1 file:

amorris 2007-01-22 21:48 Rev.: 36452

Cleaned up TAU instrumentation message output.

4 lines of code changed in 1 file:

luitjens 2007-01-22 18:13 Rev.: 36449

Missed a file in my last commit

19 lines of code changed in 1 file:

luitjens 2007-01-22 17:54 Rev.: 36448

The regridder now stores a pointer to the loadbalancer, scheduler, and
problem spec instead of querying and passing them around.

Cleaned up the useSFC code in the dynamic load balancer.

Cleaned up the BNRRegridder code and added the initial infastructure to
allow the BNRRegridder to load balance.

302 lines of code changed in 10 files:

luitjens 2007-01-22 12:20 Rev.: 36442


Fixed a segfault due to an uninitalized variable that could occur when
the problem dimensions were less than 3.

Fixed a bug when using multiple processors when the problem dimension
was less than 2.

2 lines of code changed in 1 file:

jas 2007-01-21 20:25

Add arches heat flux boundary conditions.

239 lines of code changed in 9 files:

jas 2007-01-21 20:24 Rev.: 36435

Add arched heat flux boundary conditions.

66 lines of code changed in 1 file:

worthen 2007-01-19 18:15 Rev.: 36425

Update path to lamboot for pollux RT

1 lines of code changed in 1 file:

worthen 2007-01-19 18:12 Rev.: 36424

Add /usr/sbin to RT PATH

0 lines of code changed in 2 files:

luitjens 2007-01-19 13:50 Rev.: 36420

More (and hopefully final) interface changes to the SFC class. The SFC
class is no longer templated on dimension and is now a runtime
parameter.

312 lines of code changed in 3 files:

luitjens 2007-01-18 15:32 Rev.: 36419

Moved SFC code from Ports to Components/LoadBalancers. It didn't make
sense in ports.

3862 lines of code changed in 10 files:

luitjens 2007-01-18 15:21 Rev.: 36418

More SFC interface changes

3761 lines of code changed in 2 files:

worthen 2007-01-17 19:54 Rev.: 36413

Update RT crontabs, and enable Darwin RT

15 lines of code changed in 5 files:

worthen 2007-01-17 19:52 Rev.: 36412

Tweak Tester scripts and fake Arches to be compatible with each other

0 lines of code changed in 3 files:

guilkey 2007-01-17 19:09 Rev.: 36411

Have a working version of findCellAndWeights for the transition nodes,
and seem to be going from particles to grid and back successfully across
levels. The grid to particles stuff needs a major overhaul.

119 lines of code changed in 5 files:

luitjens 2007-01-17 16:45 Rev.: 36409

More interface changes

75 lines of code changed in 2 files:

luitjens 2007-01-17 16:32 Rev.: 36408

Fixed a bug.

7 lines of code changed in 1 file:

luitjens 2007-01-17 13:58 Rev.: 36406

Modified the interface slightly.


60 lines of code changed in 1 file:

harman 2007-01-17 12:03 Rev.: 36402

better bullet proofing for the input file format

0 lines of code changed in 2 files:

worthen 2007-01-17 09:59 Rev.: 36400

Remove SMPM and SMPMICE tests from the tester, but keep the files around in case sometime we need them again

0 lines of code changed in 2 files:

harman 2007-01-17 09:35 Rev.: 36399

Throw an exception if this solver is called. One of the calls to hypre needs
to be changed if using hypre-2.0

0 lines of code changed in 2 files:

dav 2007-01-16 17:41 Rev.: 36397

Only real change: Changed message dialog name from .md to $w.md. This allows for more than one ParticlVis module. Indented and untabified.

213 lines of code changed in 1 file:

dav 2007-01-16 17:31 Rev.: 36396

added white space for readability

0 lines of code changed in 2 files:

dav 2007-01-16 17:27 Rev.: 36395

Check to see if the mpi we found is actually mpich. Added HYPRE_utilities to Hypre link line.

46 lines of code changed in 2 files:

dav 2007-01-16 12:55 Rev.: 36388

Added #include <mpi_defs> so that HAVE_MPICH will be automatically included. Indented some #includes.

12 lines of code changed in 1 file:

harman 2007-01-16 11:43 Rev.: 36387

Replaced hard coding for physical dimensions

0 lines of code changed in 2 files:

sameer 2007-01-12 19:43 Rev.: 36383

Added a PDT_PARSER guard to prevent struct edgepairless from getting defined
twice. This does not affect the regular compilation with the other compilers. This
is needed because PDT does not support hash_map and there is a section above this
definition (!HAVE_HASH_MAP) where this struct is defined previously.

0 lines of code changed in 2 files:

sameer 2007-01-12 19:40 Rev.: 36382

Added guards for HAVE_HASH_MAP for str_hasher. This only affects parsing
using PDT. Intel/GNU compilers get #define HAVE_HASH_MAP from
sci_hash_map.h. Confirmed with
icpc -E that this code is available. This fix is required because KAI
headers included in PDT do not have hash_map, an STL extension.

0 lines of code changed in 2 files:

dav 2007-01-12 17:01 Rev.: 36380

Need #include algorithm for 'remove_if' on some platforms.

3 lines of code changed in 1 file:

harman 2007-01-12 13:42 Rev.: 36378

minor changes to the hardwired initialization

0 lines of code changed in 2 files:

damevski 2007-01-12 11:07 Rev.: 36376

Improved test, but not all the way finished yet.

0 lines of code changed in 4 files:

ayla 2007-01-11 19:31 Rev.: 36374

Move CommError to a new Exceptions directory.

202 lines of code changed in 31 files:

luitjens 2007-01-11 17:24 Rev.: 36369

HZ and CLK_TCK are deprecated CLOCKS_PER_SEC is equivalent to them.

This fixes a compiler error with new compilers.

0 lines of code changed in 2 files:

luitjens 2007-01-11 15:37 Rev.: 36366

Initialize dump frame

0 lines of code changed in 2 files:

harman 2007-01-11 11:28 Rev.: 36362

added "hardWired" custom initialize option. Currently, it's a smooth expoential

21 lines of code changed in 1 file:

borodai 2007-01-10 13:04 Rev.: 36352

revert Todd's "fixes"

3 lines of code changed in 1 file:

harman 2007-01-10 12:29 Rev.: 36351

added missing brackets

0 lines of code changed in 4 files:

worthen 2007-01-09 22:31 Rev.: 36349

Fix ParticleVariable copy data memory leak

5 lines of code changed in 1 file:

jfsheph 2007-01-09 12:53 Rev.: 36344

commenting out some unused code

0 lines of code changed in 2 files:

worthen 2007-01-08 21:19 Rev.: 36342

Change more 'True' to '1' for python < 2.2

0 lines of code changed in 2 files:

guilkey 2007-01-08 14:26 Rev.: 36339

Initialize num_fine to zero so that it is always set.

1 lines of code changed in 1 file:

harman 2007-01-08 13:43 Rev.: 36338

Don't throw a warning if there's a comment inside of a geometry piece.

1 lines of code changed in 1 file:

ayla 2007-01-08 12:09 Rev.: 36337

Add new dialog header include.

1 lines of code changed in 1 file:

worthen 2007-01-06 12:25 Rev.: 36331

Apparently the python (v2.1.1) on ray doesn't like 'True'

1 lines of code changed in 1 file:

ayla 2007-01-05 17:51 Rev.: 36329

Remove configure header file.

1 lines of code changed in 2 files:

damevski 2007-01-05 15:30 Rev.: 36328

Minor bugs fixed

6 lines of code changed in 6 files:

guilkey 2007-01-04 18:34 Rev.: 36323

Liberalize the bounding box for the cylinder.

0 lines of code changed in 2 files:

jas 2007-01-04 15:38 Rev.: 36318

New arches heat flux boundary conditions modeled after HeatFluxBC.

350 lines of code changed in 4 files:

jas 2007-01-04 12:00 Rev.: 36313

Add flux variations over a cylinder.

17 lines of code changed in 3 files:

harman 2007-01-04 09:49 Rev.: 36312

removed

-#ifdef __APPLE__
-# define isnan __isnand
-#endif

0 lines of code changed in 1 file:

dav 2007-01-03 17:04 Rev.: 36307

Fix Mac build

1 lines of code changed in 1 file:

worthen 2007-01-03 13:36 Rev.: 36304

Get AMR MPMICE (without AMR MPM) Relocate to work

6 lines of code changed in 2 files:

borodai 2007-01-03 13:20 Rev.: 36303

Fixed a typo.

1 lines of code changed in 1 file:

borodai 2007-01-03 12:53 Rev.: 36302

Added option to do only final projection for multistep RK SSP methods.

13 lines of code changed in 2 files:

worthen 2007-01-03 12:11 Rev.: 36301

Don't delete these in HRegridder, as they are now deleted in the parent

0 lines of code changed in 1 file:

harman 2007-01-03 12:04 Rev.: 36300

added bulletproofing. You must specify <useLockStep> with MPMICE and AMR

9 lines of code changed in 1 file:

worthen 2007-01-03 10:51 Rev.: 36297

fix sgi build

0 lines of code changed in 2 files:

worthen 2007-01-03 02:08 Rev.: 36296

Fix AMR Relocate crash

1 lines of code changed in 1 file:

worthen 2007-01-03 00:40 Rev.: 36295

Forgot a weed...

0 lines of code changed in 1 file:

worthen 2007-01-03 00:40 Rev.: 36294

Grid: Remove lockstep AMR weed. Level: Remove bad AMR incrementing

2 lines of code changed in 2 files:

harman 2007-01-02 19:13 Rev.: 36293

added exponential initialization

f[c] = coeff.x() * exp(-1.0/( d.x() * ( 1.0 - d.x() ) + 1e-100) )
+ coeff.y() * exp(-1.0/( d.y() * ( 1.0 - d.y() ) + 1e-100) )
+ coeff.z() * exp(-1.0/( d.z() * ( 1.0 - d.z() ) + 1e-100) );

Input file usage:

<exponentialInitialize> true </exponentialInitialize>
<coeff> [x,y,z] </coeff>


19 lines of code changed in 2 files:

borodai 2007-01-02 14:55 Rev.: 36288

Fixed SGI compilation problem

0 lines of code changed in 2 files:

harman 2007-01-02 14:51 Rev.: 36287

missing ;

4 lines of code changed in 1 file:

harman 2007-01-02 14:49 Rev.: 36286

added script to remove radiation model from the compile
- modified the sub.mk files and src

added make file macro "noFortran" which will remove all fortran from
the compilation

68 lines of code changed in 4 files:

luitjens 2007-01-02 14:08 Rev.: 36285

Delete Regridder VarLabels --bryan

6 lines of code changed in 1 file:

damevski 2007-01-02 14:05 Rev.: 36284

A test for the data transmitter

163 lines of code changed in 4 files:

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