Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


M. Lazar, D.M. Weinstein, J.S. Tsuruda, K.M. Hasan, K. Arfanakis, E. Meyer, B. Badie, H.A. Rowley, V. Haughton, A. Field, A.L. Alexander. “White Matter Tractography Using Diffusion Tensor Deflection,” In Human Brain Mapping, Vol. 18, pp. 306--321. 2003.


G.L. Kindlmann, D.M. Weinstein, D. Hart. “Strategies for Direct Volume Rendering of Diffusion Tensor Fields,” In IEEE Trans. Vis & Comp. Graph., Vol. 6, No. 2, pp. 124--138. April-June, 2000.


G.L. Kindlmann, D.M. Weinstein. “Hue-Balls and Lit-Tensors for Direct Volume Rendering of Diffusion Tensor Fields,” In Proceedings of the IEEE Visualization 99, pp. 183--189. 1999.

D.M. Weinstein, G. Kindlmann, E. Lundberg. “Tensorlines: Advection-Diffusion Based Propagation Through Diffusion Tensor Fields,” In IEEE Visualization, pp. 249--253. 1999.