The NIH/NIGMS
Center for Integrative Biomedical Computing

Seg3D is a relatively simple-to-use segmentation program that can be used for cases where automatic segmenting programs fail. It has a strong emphasis on manual and semi-manual segmentation, where filtered data guides the user in making decent segmentations of the data. The program is mainly intended for, but is not strictly limited to, segmentation of biological/medical data.

Seg3D also serves as the start of the modeling pipeline, where BioMesh3D can be used to turn segmentations into quality meshes and SCIRun can be used to simulate biological process on the segmented images.


Tutorials

Seg3D Basic Functionality

pdf functionality		 Seg3D Tutorial

pdf tutorial		 Seg3D Python examples

pdf python


Part 1: Create Project
Part 2: Opening Images

Part 3: Layout
Part 4: Layer Manager

Part 4.5: Navigation
Part 5: Active Layer

Part 6: Threshold Mask
Part 7:

Part 8: Save Project		  


Seg3D for Users 2011 (Full Seminar)

 

Seg3D for Users 2011 (Individual Clips)