The NIH/NIGMS
Center for Integrative Biomedical Computing

SCIRun is a problem solving environment or "computational workbench" in which a user selects software modules that can be connected in a visual programing environment to create a high level workflow for experimentation. Each module exposes all the available parameters necessary for scientists to adjust the outcome of their simulation or visualization. The networks in SCIRun are flexible enough to enable duplication of networks and creation of new modules.



Many SCIRun users find this software particularly useful for their bioelectric field research. Their topics of investigation include cardiac electro-mechanical simulation, ECG and EEG forward and inverse calculations, modeling of deep brain stimulation, electromyography calculation, and determination of the electrical conductivity of anisotropic heart tissue. Users have also made use of SCIRun for the visualization of breast tumor brachytherapy, computer aided surgery, teaching, and a number of non-biomedical applications.

 

 

SCIRun Acknowledgement
SCIRun License
CIBC Acknowledgment
Contributors


Acknowledgement: SCIRun is an Open Source software project that is principally funded through the SCI Institute's NIH/NIGMS CIBC Center. Please use the following acknowledgment and send us references to any publications, presentations, or successful funding applications that make use of NIH/NIGMS CIBC software or data sets.

"This project was supported by the National Institute of General Medical Sciences of the National Institutes of Health under grant numbers P41 GM103545 and R24 GM136986.”

 

 

SCIRun Citation: [bibtex citation] [Endnote citation]

 

SCIRun License

SCIRun is available for free and is open source under the MIT License:

The MIT License

Copyright (c) 2014 Scientific Computing and Imaging Institute,
University of Utah.

Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the "Software"),
to deal in the Software without restriction, including without limitation
the rights to use, copy, modify, merge, publish, distribute, sublicense,
and/or sell copies of the Software, and to permit persons to whom the
Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
DEALINGS IN THE SOFTWARE.

 


NIH/NIGMS Center for Integrative Biomedical Computing Acknowledgment

CIBC software and the data sets provided on this web site are Open Source software projects that are principally funded through the SCI Institute's NIH/NIGMS CIBC SCIRun License For us to secure the funding that allows us to continue providing this software, we must have evidence of its utility. Thus we ask users of our software and data to acknowledge us in their publications and inform us of these publications.

"This project was supported by the National Institute of General Medical Sciences of the National Institutes of Health under grant numbers P41 GM103545 and R24 GM136986.”


Steve Parker, David Weinstein, Marty Cole, Michael Callahan, McKay Davis, J. Davison de St. Germain, Yarden Livnat, Allen Sanderson, Darby Van Uitert, Jenny Simpson, Chris Moulding, Ted Dustman, Rob MacLeod, Blythe, Nobleman, John McCorquodale, Keming Zhang, Kurt Zimmerman, Kostadin Damevski, Alexei Samsonov, Erik Kuehne, Peter-Pike Sloan, Oleg Portniaguine, James Bigler, Wayne Witzel, Bryan Worthen, David Hart, Chris Butson, Sascha Moehrs, Lisa Durbeck, John Schmidt, Richard Coffey, Jesse Hall, Nick Benson, Randy Jones, Rob Van Uitert, Kai Li, Yesim Seringagoglu, Lorena Kreda, Alireza Ghodrati, Saeed Babaeizadeh, Jeroen Stinstra, Erik Anderson, Jason Shepherd, Frank Sachse, Darrell Swenson, Ayla Khan, Burak Erem, Andrew Keely, Kristen Zygmunt, Jess Tate, Brett Burton, Mike Steffen, Tom Fogal, Josh Blauer, Ran Tao, Daniel White, Moritz Dannhauer, Jovana Knežević, Josh Levine, Jaume Coll-Font, James Hughes, Ben Larsen, Spencer Frisby, Collin Tate, Shankar Sastry, Dafang Wang.