Directory CCA/Components/Wasatch/Expressions/Turbulence/

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tsaad 2012-12-06 13:36 Rev.: 49665

Fix the failing Wasatch test. This was due to a bug that I introduced last week when trying to activate the Vreman turbulence model for two-dimensional flows. The RT and buildbot may still fail today in case the old gold_standards for this test are still on those machines. If this is the case, I will update those tomorrow morning when the RT updates. \n

35 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (new)

tsaad 2012-11-30 20:27 Rev.: 49639

allow Vreman model to be used in 2D - this will help with the outflow bc experiments. Also use a more robust way of checking periodicity when Warches is used.

48 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+48 -48)

jas 2012-10-22 23:47 Rev.: 49484

Update the copyright notice to include the MIT License and fix the formatting
issues with the spurious "\".

22 lines of code changed in 17 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+2), StrainTensorMagnitude.h (new), TurbulenceParameters.cc (+3 -1), TurbulenceParameters.h (+2), TurbulentDiffusivity.cc (new), TurbulentDiffusivity.h (+2), TurbulentViscosity.cc (new), WallDistance.h (+2), sub.mk (new)

tsaad 2012-10-16 15:08 Rev.: 49453

Reduce the amount of BC processing (and code) using an elegant way for setting BC values for staggered fields. Also cleanup some cout statements and obsolete comments.

5 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentViscosity.cc (+5 -2)

tsaad 2012-10-13 14:34 Rev.: 49416

enforce realizability on Vreman model when using embedded boundaries. This is much more efficient than multiplying with a volume fraction (which increases dependencies and number of operations).

13 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+11 -3), TurbulentViscosity.cc (+2 -2)

jas 2012-10-12 16:59 Rev.: 49413

Squashed commit of the following:

commit a1e8c675d139003247378067ec0431806029cb14
Merge: 5e29398 49ca967
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:36:18 2012 +0000

Update branch with latest changes from trunk.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49412 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 5e293985e95fc70fd682fbf31fb93d7b72f1108e
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:36:07 2012 +0000

Fix missing slash in installation guide.

Refactor the boost discovery mechanism in configure.ac.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49411 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit dd2caee9921c7d89791d866bccc1adbddf967f04
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:35:56 2012 +0000

Update build instructions for petsc and hypre for Fedora and CentOS.

Add BASE_LIB_DIR to the Boost section in configure.ac.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49410 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit c211e5394202174e69c4781b1bfd937e6a4e9e70
Merge: 425f4ca 6255204
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:35:14 2012 +0000

Update the release branch with changes from master.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49409 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 425f4caed59a4864374dbed64d46ade4d5fa5eee
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:33:39 2012 +0000

Remove all remaining pieces of the Angio component.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49408 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 5a92abece778059b6a1765ebd971b71744f64793
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:33:24 2012 +0000

Remove the Angio component.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49407 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 78e24afb3a187a45cf3669ff4588d096c8d38b8f
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:33:11 2012 +0000

Remove the Dan_files/ from the StandAlone/inputs/UintahRelease/.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49406 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit a938560edb0607e2e4aa63cb742b4b55b7f62cd7
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:33:01 2012 +0000

Notes about compiling boost and cmake and changes to the Centos section.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49405 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 0c7aa437777c336f92dd8be971c1e1a1cf01c367
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:32:53 2012 +0000

Add wasatch build dependences for opensuse.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49404 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 23b71be7d9ffd177b81f64498411584c055504e1
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:32:46 2012 +0000

Update dependencies for CentOS for building Wasatch.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49403 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 5b99e25a6306b02cc8ecb9baad84fa3d470e194f
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Oct 12 23:32:38 2012 +0000

Update packages necessary for compiling Wasatch.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49402 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit add8b7cbd6668abbe4f57f584dab24c8552b6da8
Author: tsaad <tsaad@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Tue Oct 2 20:36:32 2012 +0000

remove obsolete input files.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49330 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit f7ac87d4fd61d896eb1ba9f52a0b6cd2970783e5
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sun Sep 30 02:11:34 2012 +0000

Use the 1.5.0 git branch for the various Wasatch3P libraries.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49311 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 25156c6ba612634f5d66a5fb1be670fd5a82a23b
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sat Sep 29 03:41:39 2012 +0000

Remove the release file in the build_scripts/.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49308 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 94b484f3b209b8b5d8ee73bae0f9ba54c91592ef
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sat Sep 29 03:41:31 2012 +0000

Change == to = in all "test statements".

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49307 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit daeab4316362d0081fb8a66832734a3ffdfbff1f
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sat Sep 29 03:41:23 2012 +0000

Update to version 1.5.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49306 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit e3d51281308a5fbbde3f097e5826e85686fe9254
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sat Sep 29 03:41:15 2012 +0000

Update release files to include Wasatch component.

Add option to build Wasatch3P libraries for a particular hash tag.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49305 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 9a8451d8a5b1fbf36626b3727dad48d7184b5e6d
Merge: 984d356 0a25aa2
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Sat Sep 29 03:38:16 2012 +0000

Update copyright notice.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49304 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 984d3566f78e7e1c2b2c29ea0368451ae768119a
Author: jas <jas@aee3fe44-4ef4-0310-ac56-cc817e9d0e43>
Date: Fri Sep 28 18:39:29 2012 +0000

Uintah 1.5.0 Branch.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/branches/UintahRelease_1_5_0@49299 aee3fe44-4ef4-0310-ac56-cc817e9d0e43

commit 0a25aa2731b9c75fcf609f70093484af5be5f23a
Author: John Schmidt <john.schmidt@utah.edu>
Date: Thu Sep 27 01:50:47 2012 -0600

Updated copyright header.

18 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: sub.mk (+18 -21)

tsaad 2012-10-02 10:49 Rev.: 49329

make the vreman and wale models more robust by proper handling of cases with zero denominators. This will break WALE wasatch test.

9 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+2 -1), TurbulentViscosity.cc (+7 -1)

tsaad 2012-09-27 10:42 Rev.: 49293

nomenclature fixes.

31 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+31 -29)

tsaad 2012-09-27 09:46 Rev.: 49292

rename the WALE model tensor.

22 lines of code changed in 3 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+15 -15), StrainTensorMagnitude.h (+6 -6), TurbulentViscosity.cc (+1 -1)

tsaad 2012-09-27 09:25 Rev.: 49290

Add some documentation to the BCHelperTools functions.

1 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentViscosity.cc (+1 -1)

tsaad 2012-09-26 00:00 Rev.: 49282

Add Vreman turbulence model.

283 lines of code changed in 7 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+192), StrainTensorMagnitude.h (+44), TurbulenceParameters.cc (+2), TurbulenceParameters.h (+1), TurbulentViscosity.cc (+34 -7), TurbulentViscosity.h (new)

tsaad 2012-09-25 12:19 Rev.: 49277

rip out an unused temporary field and optimize the calculation of the WALE model expression.

6 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+6 -36)

jsutherland 2012-09-24 19:18 Rev.: 49273

more doxygen fixes.

3 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentDiffusivity.h (+3 -1)

jsutherland 2012-09-24 19:08 Rev.: 49271

Fix a bunch of documentation that was causing trouble for Doxygen.
There are still a ton of doxygen warnings to be cleaned up…

2 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentViscosity.h (+2 -2)

tsaad 2012-09-24 15:27 Rev.: 49267

Fix typo in constant Smagorinsky model. I was multiplying the turbulent viscosity by a factor of two which was producing inconsistent results with experimental data.

31 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+29 -29), TurbulentViscosity.cc (+2 -2)

tsaad 2012-09-14 09:25 Rev.: 49225

Improve the turbulence interface for Wasatch and add a few helpful funcations to streamline the addition of the WALE model to Arches.

36 lines of code changed in 6 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+6), StrainTensorMagnitude.h (+6), TurbulentDiffusivity.cc (+7), TurbulentDiffusivity.h (+5), TurbulentViscosity.cc (+7), TurbulentViscosity.h (+5)

tsaad 2012-09-10 15:55 Rev.: 49196

add copyright info. move things around after the solverparams fix.

176 lines of code changed in 8 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+22), StrainTensorMagnitude.h (+22), TurbulenceParameters.cc (+22), TurbulenceParameters.h (+22), TurbulentDiffusivity.cc (+22), TurbulentDiffusivity.h (+22), TurbulentViscosity.cc (+22), WallDistance.h (+22)

jsutherland 2012-08-17 13:42 Rev.: 49092

Clean up a few warnings.

4 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentDiffusivity.cc (+2 -2), TurbulentDiffusivity.h (+2 -2)

amir 2012-08-13 18:42 Rev.: 49066

Turbulent scalar closure model. The verification test case is not included. It will be added after getting LES model verification test case. The plus shape profile is committed for initial condition purposes as well.

155 lines of code changed in 5 files:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulenceParameters.cc (+3), TurbulenceParameters.h (+3 -2), TurbulentDiffusivity.cc (+67), TurbulentDiffusivity.h (+80), sub.mk (+2 -1)

tsaad 2012-08-07 20:42 Rev.: 49040

initialize a few temporary fields to clear the RT error. Will still need to update those gold standards tomorrow mornin.

12 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+12)

jsutherland 2012-07-30 10:40 Rev.: 48997

Fix a compiler warning.

2 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentViscosity.cc (+2 -2)

tsaad 2012-06-20 21:54 Rev.: 48881

initialize a temporary field in the shear stress calculation that was causing some instability in the LES model for certain problems. Alex, this should fix the issues you were having when running LES.

1 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: TurbulentViscosity.cc (+1 -1)

tsaad 2012-06-20 14:45 Rev.: 48880

use attach_dependency to add the turbulent viscosity to the molecular viscosity instead of pasing it to the stress tensor expression.

0 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (-3)

tsaad 2012-06-15 13:58 Rev.: 48871

add function that calculates an approximate walldistance field. this uses the poisson equation framework recently committed. I still need to do proper normalization of the walldistance calculation.

171 lines of code changed in 1 file:

• CCA/Components/Wasatch/Expressions/Turbulence: WallDistance.h (+171)

jsutherland 2012-06-13 20:31 Rev.: 48867

Second try at a new API for ExprLib FieldManager

116 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+103 -107), TurbulentViscosity.cc (+13 -12)

jsutherland 2012-06-13 12:40 Rev.: 48865

Revert "Updates due to recent API change in ExprLib"

This reverts commit eeefe0834374a9fd83fb5ba17a179aeba22a8a1c.

117 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+107 -103), TurbulentViscosity.cc (+10 -11)

jsutherland 2012-06-13 10:51 Rev.: 48863

Updates due to recent API change in ExprLib

114 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+103 -107), TurbulentViscosity.cc (+11 -10)

tsaad 2012-06-12 12:08 Rev.: 48855

cleanup some incorrect doxygen tags and merge some documentation.

4 lines of code changed in 2 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.h (+2 -3), TurbulentViscosity.h (+2 -3)

tsaad 2012-06-08 08:03 Rev.: 48843

Add framework for LES eddy viscosity models. Implement constant Smagorinsky model and the Wall-Adapating Local Eddy-Viscosity model (WALE).

852 lines of code changed in 7 files:

• CCA/Components/Wasatch/Expressions/Turbulence: StrainTensorMagnitude.cc (+386), StrainTensorMagnitude.h (+148), TurbulenceParameters.cc (+30), TurbulenceParameters.h (+41), TurbulentViscosity.cc (+105), TurbulentViscosity.h (+106), sub.mk (+36)