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R.S. MacLeod, J.G. Stinstra, S.~Lew, R.T. Whitaker, D.J. Swenson, M.J. Cole,
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\newblock Subject-specific, multiscale simulation of electrophysiology: a
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\newblock {\em Philosophical Transactions of The Royal Society A, Mathematical,
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C.R. Johnson.
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\bibitem{SCI:Joh2012a}
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\newblock Biomedical visual computing: Case studies and challenges.
\newblock {\em {IEEE} Computing in Science and Engineering}, 14(1):12--21,
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\bibitem{SCI:Joh2006a}
C.R. Johnson and D.M. Weinstein.
\newblock Biomedical computing and visualization.
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C.R. Johnson, R.S. MacLeod, S.G. Parker, and D.M. Weinstein.
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\newblock Magnetic resonance imaging of the body trunk using a single-slab,
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T.G. Reese, O.~Heid, R.M. Weisskoff, and V.J. Wedeen.
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\newblock {\em Magn. Reson. Med.}, 49(1):177--182, 2003.

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J.~Juntu, J.~Sijbers, D.V. Dyck, and J.~Gielen.
\newblock Bias field correction for mri images.
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Y.~Zang, M.~Brady, and S.~Smith.
\newblock Segmentation of brain mr images through a hidden markov random field
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\newblock {\em IEEE Trans Med Imag}, 20(1):45--57, 2001.

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J.L.R. Anderson, S.~Skare, and J.~Ashburner.
\newblock How to correct susceptibility distortions in spin-echo echo-planar
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\newblock {\em NeuroImage}, 20(2):870--888, 2003.

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S.M. Smith, M.~Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens,
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\newblock Advances in functional and structural mr image analysis and
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\newblock {\em NeuroImage}, 23(S1):208--219, 2004.

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X.~Li, P.S. Morgan, J.~Ashburner, J.C. Smith, and C.~Rorden.
\newblock The first step for neuroimaging data analysis: Dicom to nifti
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\newblock {\em Journal of Neuroscience Methods}, 264:47--56, 2016.

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P.A. Yushkevich, J.~Piven, H.C. Hazlett, R.G. Smith, S.~Ho, J.C. Gee, and
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\newblock User-guided 3d active contour segmentation of anatomical structures:
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\newblock {\em NeuroImage}, 31(3):1116--28, July 2006.

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A.~Fedorov, R.~Beichel, J.~Kalpathy-Cramer, J.~Finet, J-C. Fillion-Robin,
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\newblock 3d slicer as an image computing platform for the quantitative imaging
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\newblock {\em Magn. Reson. Imaging}, 30(9):1323--31, November 2012.

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\bibitem{ref:nifti}
Jimmy Shen.
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\bibitem{ref:filter}
U.~Aydin, J.~Vorwerk, P.~Kupper, M.~Heers, H.~Kugel, A.~Galka, L.~Hamid,
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\newblock Combining eeg and meg for the reconstruction of epileptic activity
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\newblock {\em PLOS ONE}, 9(3), March 2014.

\bibitem{ref:edfread}
Brett Shoelson.
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\newblock
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\bibitem{ref:seg3d}
CIBC, 2016.
\newblock Seg3D: Volumetric Image Segmentation and Visualization. Scientific
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\bibitem{ref:bet1}
S.M. Smith.
\newblock Fast robust automated brain extraction.
\newblock {\em Human Brain Mapping}, 17(3):143--155, November 2002.

\bibitem{ref:freesurf}
A.M. Dale, B.~Fischl, and M.I. Sereno.
\newblock Cortical surface-based analysis. i. segmentation and surface
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\newblock {\em NeuroImage}, 9:179--194, 1999.

\bibitem{ref:spm}
Wellcome Trust~Centre for Neuroimaging.
\newblock Statistical parametric mapping, May 2016.
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\bibitem{ref:abc}
Koen Van~Leemput, Frederik Maes, Dirk Vandermeulen, and Paul Suetens.
\newblock Automated model-based tissue classification of mr images of the
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\newblock {\em IEEE transactions on medical imaging}, 18(10):897--908, 1999.

\bibitem{ref:pseudoct}
A.~Torrado-Carvajal, J.L. Herraiz, E.~Alcain, A.S. Montemayor,
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\newblock Fast patch-based pseudo-ct synthesis from t1-weighted mr images for
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\newblock {\em Journal of Nuclear Medicine}, 57(1):136--143, 2016.

\bibitem{ref:cleaver}
CIBC, 2016.
\newblock Cleaver: A MultiMaterial Tetrahedral Meshing Library and Application.
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\bibitem{ref:math}
C.R. Johnson.
\newblock {\em Computational Methods and Software for Bioelectric Field
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\newblock CRC Press, 4th edition, 2015.

\bibitem{ref:cond}
M.~Rullmann, A.~Anwander, M.~Dannhauer, S.K. Warfield, F.H. Duffy, and C.H.
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\newblock Eeg source analysis of epileptiform activity using a 1 mm anisotropic
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\newblock {\em NeuroImage}, 44:399--410, 2009.

\bibitem{ref:scaling}
D.~Gullmar, J.~Haueisen, and J.~R. Reichenbach.
\newblock Influence of anisotropic electrical conductivity in white matter
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\newblock {\em NeuroImage}, 51:145--163, 2010.

\bibitem{ref:fem}
D.~Wang, R.M. Kirby, R.S. MacLeod, and C.R. Johnson.
\newblock Inverse electrocardiographic source localization of ischemia: An
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\newblock {\em Journal of Computational Science}, 2013.

\bibitem{ref:bet2}
M.~Jenkinson, M.~Pechaud, and S.~Smith.
\newblock Bet2: Mr-based estimation of brain, skull and scalp surfaces.
\newblock {\em n Eleventh Annual Meeting of the Organization for Human Brain
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