Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

General News

Bei2Congratulations to Bei Wang on her NSF career award. A Measure Theoretic Framework for Topology-Based Visualization. Data generated from multiphysics simulations, such as binary black hole mergers and fluid dynamics, has experienced exponential growth thanks to the growing capabilities of computing facilities. At the same time, data-intensive science relies on the acquisition, management, analysis, and visualization of data with increasing spatial and temporal resolutions. This project develops a new set of approaches to support the core tasks in scientific data visualization (such as feature tracking, event detection, ensemble analysis, and interactive visualization) in a way that is more reflective of the underlying physics using measure theory. The results will be instantiated by a collection of open-source software tools to be deployed for the collaborating scientists in materials science and high-performance computing, and the larger research community. This project leverages tools from geometric measure theory, information theory, and transportation theory for topology-based visualization, which utilizes topological concepts to describe, reduce and organize data for scientific understanding and communication.
Hol2022bCongratulations to John Holmen, Damodar Sahasrabudhe and Martin Berzins for their best paper award at PASC22.

J.K. Holmen, D. Sahasrabudhe, M. Berzins. “Porting Uintah to Heterogeneous Systems,” In Proceedings of the Platform for Advanced Scientific Computing Conference (PASC22), ACM, 2022.
joshi payneCongratulations to Sarang Joshi and Allison Payne on their five year funding for “A tissue viability imaging biomarker for use in non-invasive breast cancer therapy.” This collaborative project is between the Scientific Computing and Imaging (SCI) Institute and the Utah Center for Advanced Imaging Research (UCAIR).

More women are diagnosed with breast cancer than any other type of cancer, besides skin cancer. This year, an estimated 281,550 women in the United States will be diagnosed with invasive breast cancer, and 49,290 women will be diagnosed with non-invasive (in situ) breast cancer. From 2008 to 2017, invasive breast cancer in women increased by half a percent each year.

bha2021dCongratulations to Harsh Bhatia (LLNL/SCI Alumnus), Duong Hoang (SCI), Nathan Morrical (SCI), Peter Lindstrom (LLNl), Peer-Timo Bremer (LLNL/SCI), and Valerio Pascucci (SCI) for receiving the Best Paper Award at the IEEE Pacific Visualization 2022 Conference for their paper:

AMM: Adaptive Multilinear Meshes
friere aaasCongratulations to SCI alum Juliana Freire who has been honored as an AAAS lifetime fellow.

In a tradition stretching back to 1874, the AAAS Council elects as Fellows a distinguished cadre of scientists, engineers, and innovators who have been recognized for their achievements across disciplines. The 2021 class of AAAS Fellows includes 564 scientists, engineers, and innovators spanning 24 disciplines.

HPC21Arecibo ObservatoryIn December of last year, the renowned Arecibo Observatory in Puerto Rico collapsed in spectacular fashion when the 900-ton equipment platform, suspended about 500 feet above the dish, came crashing down due to a support cable unraveling.

Fortunately, no one was hurt, but the question remained: What about the invaluable astronomical and atmospheric science data that was collected for decades by the observatory’s 1,000-foot-wide reflector dish? University of Utah Scientific Computing and Imaging (SCI) Institute and School of Computing professor Valerio Pascucci and U faculty members were part of a consortium of researchers responsible for retrieving that precious data and moving it to a safe location.

IMG 8805Bei Wang Phillips, a Faculty at the SCI Institute and an Assistant Professor at the School of Computing, and Arul Mishra and Himanshu Mishra, both Professors of Marketing at the David Eccles School of Business applied for the competitive Deep Tech grant offered by the State of Utah’s Office of the Commissioner of Higher Education. They were awarded a 3-year grant of about $340,000 for developing courses/modules on AI ethics and fairness that would bring fair and equitable AI to the forefront of education.

ldav21Congratulations to Duong Hoang, Harsh Bhatia, Peter Lindstrom, and Valerio Pascucci on receiving best paper honorable mention at the IEEE Symposium on Large Data Analysis and Visualization (LDAV) for their paper titled "High-quality and Low-memory-footprint Progressive Decoding of Large-scale Particle Data."

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oneAPI cross-architecture programming & Intel® oneAPI Rendering Toolkit to Improve Large-scale Simulations, Data Analytics & Visualization for Scientific Workflows


[Oct. 26, 2021] - The Scientific Computing and Imaging (SCI) Institute at the University of Utah is pleased to announce that it is expanding its Intel Graphics and Visualization Institute of Xellence (Intel GVI) to an Intel oneAPI Center of Excellence (CoE). The oneAPI Center of Excellence will focus on advancing research, development and teaching of the latest visual computing innovations in ray tracing and rendering, and using oneAPI to accelerate compute across heterogeneous architectures (CPUs, GPUs including future upcoming Intel Xe architecture, and other accelerators). Adopting oneAPI’s cross-architecture programming model provides a path to achieve maximum efficiency in multi-architecture deployments supporting CPUs + accelerators. This core approach based on open standards will allow fast, agile development and support new, advanced features without costly management of multiple vendors’ specific proprietary code bases.

Valerio Pascucci 768x512The University of Utah’s Scientific Computing and Imaging (SCI) Institute is leading a new initiative to democratize data access.

The National Science Foundation (NSF) awarded a $5.6 million project to a team of researchers led by School of Computing professor Valerio Pascucci (pictured), who is also director of the Center for Extreme Data Management in the College of Engineering, to build the critical infrastructure needed to connect large-scale experimental and computational facilities and recruit others to data-driven sciences.

hansenCongratulations to Chuck Hansen on being elected to the IEEE Board of Governors for 2022. IEEE Computer Society relies on a fully elected Board of Governors (BOG) to drive its vision forward, provide policy guidance to program boards and committees, and review the performance of the organization to ensure compliance with its policy directions.