Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2007


 J.K. Triedman, M. Jolley, R.S. MacLeod, J. Stinstra, D.H. Brooks, S. Pieper. “Finite Element Modeling of Novel Defibrillation Approaches in Children and Adults,” In Proc. LISSA Conf., Bethesda, MD, November, 2007.


B. Yihnaz, R.S. MacLeod, B.B. Punske, B. Taccardi, and D.H. Brooks. “Generalized training subset selection for statistical estimation of epicardial activation maps from intravenous catheter measurements,” In Compo in BioI. and Med., In Compo in BioI. and Med., Vol. 37, No. 3, pp. 328--336. 2007.


B. Yilmaz, R.S. MacLeod. “Generalized Training Subset Selection for Statistical Estimation of Epicardial Activation Maps from Intravenous Catheter Measurements,” In Computers in Biology and Medicine, Vol. 37, No. 9, pp. 328--336. March, 2007.

2006


 A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod. “Wavefront-based Models for Inverse Electrocardiography,” In IEEE Trans Biomed. Eng., Vol. 53, No. 9, pp. 1821--1831. 2006.
DOI: 10.1109/TBME.2006.878117


A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod. “Lead Selection for Inverse Electrocardiography,” In IEEE Trans Biomed. Eng., pp. in press. 2006.


A. Ghodrati, A. Keely, G. Tadmor, R.S. MacLeod, D.H. Brooks. “A Wavefront-Based Constraint for Potential Surface Solutions in Inverse Electrocardiography,” In 2006 International Conference of the IEEE Engineering in Medicine and Biology Society, IEEE, New York, NY, USA August, 2006.
DOI: 10.1109/IEMBS.2006.260373


A. Ghodrati, D.H Brooks, G. Tadmor, R.S. MacLeod. “A Threshold-Based Method for Inverse Solutions to Reconstruct Complex Obstacles, with Application to the Inverse Problem of Electrocardiography,” In SIAM Conference on Imaging Science, Minneapolis, MN, USA May, 2006.


M. Jolley, J. Triedman, C.-F. Westin, D.M. Weinstein, R.S. MacLeod, D.H. Brooks. “Image Based Modeling of Defibrillation in Children,” In Proceedings of the 26th Annual International Conference of the IEEE EMBS, New York, NY, USA August, 2006.


L. Lorenzo, R.S. MacLeod, R.T. Whitaker, G. Adluru, E.V.R. DiBella. “Level Sets and Shape Models for Segmentation of Cardiac Perfusion MRI,” In Proceedings of International Society for Optical Engineering (SPIE) Conference on Medical Imaging 2006, Vol. 6144, pp. 1320--1331. 2006.


Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources,” In IEEE Trans Biomed. Eng., Vol. 53, No. 10, pp. 2024--2034. October, 2006.


J.G. Stinstra, S.F. Roberts, J.B. Pormann, R.S. MacLeod, C.S. Henriquez. “A Model of 3D Propagation in Discrete Cardiac Tissue,” In Proceedings of Computers in Cardiology 2006, Vol. 33, pp. 41. 2006.


C.H. Wolters, A. Anwander, X. Tricoche, D.M. Weinstein, M.A. Koch, R.S. MacLeod. “Influence of Tissue Conductivity Anisotropy on EEG/MEG Field and Return Current Computation in a Realistic Head Model: A Simulation and Visualization Study Using High-Resolution Finite Element Modeling,” In Neuroimage, Vol. 30, No. 3, pp. 813--826. April, 2006.


B. Yilmaz, R.S. Macleod. “Instance Selection for Estimation of Epicardial Activation Sequence from Venous Catheter Measurements,” In Proceedings of the 28th IEEE EMBS Annual International Conference, pp. 3982--3985. 2006.

2005


 F. Calderero, A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod. “A Method to Reconstruct Activation Wavefronts Without Isotropy Assumptions Using a Level Sets Approach,” In Functional Imaging and Modeling of the Heart: Third International Workshop (FIMH 2005), Barcelona, June 2-4, pp. 195. 2005.


S.E. Geneser, S. Choe, R.M. Kirby, R.S. MacLeod. “Influence of Stochastic Organ Conductivity in 2D ECG Forward Modeling: A Stochastic Finite Element Study,” In Proceedings of The Joint Meeting of The 5th International Conference on Bioelectromagnetism and The 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart, pp. 5528--5531. 2005.


A. Ghodrati, D.H. Brooks, G. Tadmor, B.B. Punske, R.S. MacLeod. “Wavefront-based Inverse Electrocardiography using an Evolving Curve State Vector and Phenomenological Propagation and Potential Models,” In IJBEM, Vol. 7, No. 2, pp. 210--213. 2005.


B. Hopenfeld, J.G. Stinstra, R.S. MacLeod. “The Effect of Conductivity on ST-Segment Epicardial Potentials Arising from Subendocardial Ischemia,” In Annal. Biomed. Eng., Vol. 33, No. 6, pp. 751--763. 2005.


S. Lew, C. Wolters, K. Lee, S. Makeig, G. Worrell, R.S. MacLeod. “Epileptogenic Source Localization For Open Skull Head Model of Epilepsy By Independent Component Analysis And Inverse Dipole Fit Method,” In 1st Annual Mountain West Biomedical Engineering Conference, 2005.


R.S. MacLeod, B. Yilmaz, B.B. Punske, B. Taccardi, D.H. Brooks. “Epicardial Activation Mapping from Multielectrode Venous Catheters,” In J. Electrocardiol., pp. (in press). 2005.


R.S. MacLeod, S. Shome, J.G. Stinstra, B.P. Punske, B. Hopenfeld. “Mechanisms of Ischemia-Induced ST-Segment Changes,” In J. Electrocardiol., Vol. 38(4 Suppl), pp. 8--13. November, 2005.