Dr. Alan Kay

President and Founder, Viewpoints Research Institute

Watch the Keynote

Visualization

Faculty: Chris Johnson, Miriah Meyer, Chuck Hansen

• Visualization of Biological Data – Miriah Meyer
• Visual Analytics for Situational Awareness – Yarden Livnat
• Interactive Exploration of Large Tractography and EEG Data for Source Localization – Erik Anderson
• Uncertainty Visualization at SCI – Kristi Potter
• Visualization Approaches for Performance Analysis of Massively Parallel Applications – Paul Rosen
• BioVis Software demo – Kris Zygmunt
• CompreheNGSive, a Tool for Exploring Next-generation Sequencing Variants – Alex Bigelow
• A Story of Reanimating An Embryonic Mouse Limb – Yong Wan
• Using Depth Perception to Enhance Volume Rendering – Pascal Grosset
• ImageVis3D software – James Hughes

Simulation

Faculty: Martin Berzins, Chris Johnson, Mike Kirby, Ross Whitaker

• The Uintah Framework: A Unified Heterogeneous Task Scheduling and Runtime System for Energy Applications
• Uintah Framework Hybrid Task-based Parallelism Algorithm – Alan Humphrey
• Scalable Linear Solvers for the Next Generation: Applications in Oxy-coal Clean Energy Boiler Design – John Schmidt
• Mesoscale Reaction Modeling of Granular Beds of Explosives Subject to Impact – Joseph Peterson and Charles Wight, Dept. of Chemistry
• Unconventional and Renewable Energy Research Utilizing Advanced Computer Simulation
• Architecting the Finite Element Method Pipeline for the GPU – Zhisong Fu
• Army Collaborative Research Alliance (CRA): MSME :Electronic Materials by Design

Center for Extreme Data Management, Analysis and Visualization (CEDMAV)

Faculty: Valerio Pascucci

• ViSUS: Visualization Streams for Ultimate Scalability demos – Giorgio Scorzelli
• Analysing Performance at Exascale Using Intuitive Visualizations – Aaditya Landge
• Interactive Digital Photography at Scale – Brian Summa
• A Static Load Balancing Scheme for Parallel Volume Rendering on Multi-GPU Clusters – Shusen Liu
• Visualization and Exploration of High Dimensional Data – Dan Maljovec
• Topological Analysis of Neural Circuitry – Cameron Christensen, Attila Gyulassi
• Feature-Based Analysis of Large-Scale Data using Limited Resources and Interactive Techniques for Exploration – Wathsala Widanagamaachchi, Peer-Timo Bremer
• Scalable Visualization and Processing of High Resolution Data – Sidharth Kumar, Brian Summa
• Visualizing Robustness of Critical Points for Time-Varying Vector Fields – Bei Wang
• Hybrid Parallel Computing – Sujin Philip
• Visualization of Large Scale Microscopy Data – Shusen Liu, Cameron Christensen
• Flow Analysis for Scientific Discovery – Harsh Bathia

Microscopy

Faculty: Tolga Tasdizen, Chuck Hansen

• Fluorender, an Interactive Rendering Tool for Confocal Microscopy Visualization – Hideo Osuna , Dept. of Neurobiology and Anatomy
• NCR Toolset
• Light Microscopy Image Process – Nisha Ramesh, Luke Hogrebe
• Neural Circuit Reconstruction from Electron Microscopy Images – Cory Jones, Ting Liu, Mojtaba Seyedhosseini

Image Processing

Faculty: Guido Gerig, Ross Whitaker, Sarang Joshi

• Down Syndrome: Bridging Genes, Brain and Cognition – Clement Vachet
• Automatic Geological Feature Detection in Seismic Volumes – Danny Perry
• Polynomial Regression on Riemannian Manifolds – Jacob Hinkle
• Meshing for Multimaterial Biological Volumes – Jonathan Bronson
• An Optimal Graph-cut Method for Atrial Wall Segmentation from Delayed Contrast MRI – Gopal Veni
• White Matter Maturation in Early Brain Development – Neda Sadeghi, Anuja Sharma
• Real Time Image Denoising of Fluoroscopy Images for Dose Reduction – Caleb Rottman
• Characterization of Regional Appearance Changes in Early Brain Development – Avantika Vardhan

Shape Analysis

Faculty: Sarang Joshi, Tom Fletcher, Guido Gerig, Ross Whitaker

• Quantitative Analysis of Time Series of MR Images of TBI Patients – Bo Wang
• Analysis of Longitudinal Shape Variability vis Subject-Specific Growth Modeling – James Fishbaugh
• Shape Analysis for Orthopedics – Manasi Datar
• Analysis of Human Brain Connectivity from Multi-modal Imaging – Wei Liu, Xiang Hao
• Shape Analysis in Kernel Space – Yen-Yun Yu
• Relating Brain Shape with Neurological Disorders – Prasanna Muralidharan, Nikhil Singh

Center for Integrative Biomedical Computing (CIBC)

Faculty: Chris Johnson, Rob Macleod, Ross Whitaker

• SCIRun, Seg3D, BioMesh3D demos – Ayla Kahn, Dan White
• ImageVis3D Demos – James Hughes
• White Matter Structure Assessment from Reduced HARDI Data using Low-Rank Polynomial Appoximations – Yaniv Gur

Cardiac and Neuro Electrophysiology

Faculty: Rob Macleod

• Improving Defibrillator Use in Pediatrics using Computer Simulation
• Electrocardiographic Characterisation of Acute Myocardial Ischemia
• Tailored Atrial Fibrillation Management via Image Processing
• Precise Electrical Stimulation of the Human Brain
• Epilepsy – Identifying Epileptical Sources in the Human Brain

Jess Tate, Kedar Aras, Greg Gardner, Josh Blauer, Darrel Swenson, and Moritz Dannhauer

Genomic Signal Processing

Faculty: Orly Alter

• Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival from Comparative Modeling of Patient-Matched Tumor and Normal aCGH Profiles – Benjamin Alpert, Preethi Sankaranarayanan
• Cross-Platform Validation of a Genomic Pattern for the Prognosis and Assessment of GBM Brain Cancer – Katie Aiello
• Similarities and Differences between Normal Brain and GBM Tumor Metabolism Uncovered by SVD of Transcript Size Distributions – Nicolas Bertagnolli, Jason Tennessen
• Capacitive Model of Optically Induced Cell Stimulation May Be Incomplete – Ted Schomay

Computational Biomechanics

Faculty: Jeffrey Weiss

• Subject-Specific Computational Modeling of Normal, Dysplastic and Retroverted Hips – Corinne Henak
• FEBio: Finite Elements for Biomechanics, software demo – David Rawlins, Steve Maas, Benjamin Ellis
• AngioFE: Simulation of the Mechanical Regulation or Angiogenesis – Lowell Edgar