Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

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Most of our current software releases are now available through github. Our previous releases are archived here. Please follow the software links in the website menu to make certain you are getting the latest releases.

(Latest Version 2.2.1)

Released: July 7, 2015

[Release Notes]

Note: Version 2.2.1 is the latest stable release.

File Product Version Size Distribution Seg3D 2.2.1 27.8 MB Source
Seg3D-2.2.1.tar.gz Seg3D 2.2.1 25.6 MB Source
Seg3D2-2.2.1-win64.exe Seg3D 2.2.1 34.8 MB Windows 64-bit
Seg3D2-2.2.1-Darwin.dmg Seg3D 2.2.1 59.4 MB Mac OS X 64-bit Seg3D Data 1.0 79.6 MB Sample Data
AA-Paw.nrrd NCRR Data 26.7 MB All


  • Mouse Paw sample dataset.

Seg3DData-1.0.tar.gz Seg3D Data 1.0 79.6 MB Sample Data