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Publications
Guido Gerig
Personally
maintained publications page (see also Utah Dept.
of Bioengineering Profile)
A full list
of older publications (before 1998) for electronic transfer can be found
in the homepage of my former institution "Image Science Lab, EE Department,
Swiss Federal Institute of Technology ETH Zurich, Switzerland": BIWI .
Please press the button "Publications" and select dates (optional) and
author to get the abstract, bibliography and a gzipped
PS-file for ftp transfer.
2012 Peer reviewed journal papers
o
Jason J. Wolff,
Hongbin Gu,
Guido Gerig, Jed T. Elison, et al., Differences in White Matter Fiber
Tract Development Present from 6 to 24 Months in Infants with Autism, in
print AJNR Nov. 2011
o
Andrei Irimia, Micah C. Chambers,
Carinna M. Torgerson, Maria Filippou, David A. Hovda, Jeffry R. Alger, Guido
Gerig, Arthur W. Toga, Paul M. Vespa,
Ron Kikinis and John D. Van Horn, Patient-tailored connectomics visualization
for the assessment of white matter atrophy in traumatic brain injury, Front.
Neur. 3:10. doi: 10.3389/fneur.2012.00010 (http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract)
2012 Peer reviewed full length conference papers
o
Bo Wang, Marcel
Prastawa, Suyash
P. Awate, Andrei Irimia,
Micah C. Chambers, Paul M. Vespa, John D. Van Horn, Guido Gerig, 'Segmentation of Serial MRI of TBI patients
using Personalized Atlas Construction and Topological Change Estimation',
Proc. IEEE ISBI 2012, to appear May 2012, in print
o
Neda Sadeghi, Marcel Prastawa,
P. Thomas Fletcher, John H. Gilmore, Weili
Lin, Guido Gerig, 'STATISTICAL
GROWTH MODELING OF LONGITUDINAL DT-MRI FOR REGIONAL CHARACTERIZATION OF
EARLY BRAIN DEVELOPMENT', Proc. IEEE ISBI 2012, to appear May 2012, in
print
o
Anuja Sharma, Stanley
Durrleman, John H. Gilmore, Guido Gerig, 'LONGITUDINAL GROWTH
MODELING OF DISCRETE-TIME FUNCTIONS WITH APPLICATION TO DTI TRACT EVOLUTION
IN EARLY NEURODEVELOPMENT', Proc. IEEE ISBI 2012, to appear May 2012, in
prin
o
Avantika Vardhan, Marcel Prastawa,
Sylvain Gouttard, Joseph Piven, Guido Gerig,
'Quantifying regional growth patterns through longitudinal analysis of
distances between multimodal MR intensity distributions', Proc. IEEE ISBI
2012, to appear May 2012, in print
o
Prastawa, M., Awate, S, Joshi, S., Gerig,
G., Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation,
Registration, and Atlas Estimation, accepted MMBIA12, to appear, in print
proceedings IEEE MMBIA Jan. 2012
o
Sylvain Gouttard, Casey B. Goodlett,
Marek Kubicki,
Guido Gerig, Measures for
Validation of DTI Tractography, to appear SPIE
Feb. 2012, in print
o
James Fishbaugh, Stanley Durrleman,
Guido Gerig, A framework
for longitudinal data analysis via shape regression, to appear SPIE Feb.
2012, in print
o
Bo Wang, Marcel
Prastawa, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D.
Van Horn, and Guido Gerig, A
Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic
Brain Injury, to appear SPIE Feb. 2012, in print
o
Clement Vachet, Benjamin Yvernault,
Kshamta Bhatt, Rachel G. Smith, Guido Gerig, Heather Cody Hazlett, Martin A. Styner,
Automatic corpus callosum segmentation using a deformable active Fourier
contour model, to appear SPIE Feb. 2012, in print
2011 Peer reviewed journal papers
o
Linh Ha, Marcel
Prastawa, Guido Gerig, John Gilmore, Claudio Silva and Sarang Joshi, "Efficient Probabilistic and Geometric
Anatomical Mapping using Particle Mesh Approximation on GPUs", International
Journal of Biomedical Imaging, Volume 2011 (2011), Article ID 572187, 16
pages, doi:10.1155/2011/572187
o
Guido Gerig, Ipek Oguz, Sylvain Gouttard, Joohwi Lee,
Hongyu An, Weili
Lin, Matthew McMurray, Karen Grewen, Josephine
Johns, Martin Andreas Styner, Synergy of image
analysis for animal and human neuroimaging supports translational research
on drug abuse, Frontiers in Child and Neurodevelopmental Psychiatry, Linda
Mayes (editor), Sept. 2011 (http://www.frontiersin.org/child_and_neurodevelopmental_psychiatry_/10.3389/fpsyt.2011.00053/abstract
)
o
Irimia A, Chambers
MC, Alger JR, Filippou M, Prastawa MW, Wang B, Hovda
D, Gerig G, Toga
AW, Kikinis R, Vespa PM, Van Horn JD, Comparison
of acute and chronic traumatic brain injury using semi-automatic multimodal
segmentation of MR volumes, , J Neurotrauma.
Nov. 2011, PMID: 21787171
o
Zhu H, Kong
L, Li R, Styner M, Gerig G, Lin W, Gilmore JH, FADTTS:
functional analysis of diffusion tensor tract statistics, Neuroimage. 2011 Jun 1;56(3):1412-25.
Epub 2011 Feb 16, PMID: 21335092
o
Wang Y, Gupta
A, Liu Z, Zhang H, Escolar ML, Gilmore JH, Gouttard
S, Fillard P, Maltbie
E, Gerig G, Styner M, DTI registration in atlas based fiber
analysis of infantile Krabbe disease, Neuroimage. 2011 Apr 15;55(4):1577-86.
Epub 2011 Jan 19. PMID: 21256236
o
Knickmeyer RC, Kang C,
Woolson S, Smith JK, Hamer RM, Lin W, Gerig G, Styner
M, Gilmore JH, Twin-singleton differences in neonatal brain structure,
Twin Res Hum Genet. 2011 Jun;14(3):268-76, PMID: 21623657
o
Hazlett HC, Poe MD,
Gerig G,
Styner M, Chappell C, Smith RG, Vachet C, Piven J, Early
brain overgrowth in autism associated with an increase in cortical surface
area before age 2 years, Arch Gen Psychiatry. 2011 May;68(5):467-76. PMID: 21536976
Press
release Wall Street Journal
Press
release Los Angeles Times
Press
release WebMD
o
Shi F, Shen D, Yap PT, Fan Y, Cheng JZ, An H, Wald LL, Gerig G, Gilmore JH,
Lin W, CENTS: cortical enhanced neonatal tissue segmentation, Hum Brain
Mapp. 2011 Mar;32(3):382-96.
doi: 10.1002/hbm.21023.
PMID: 20690143
2011 Peer reviewed full length conference papers
o
S.H. Kim,
V. Fonov, J. Piven,
J. Gilmore, C. Vachet, G. Gerig, D.L. Collins, M. Styner. Spatial Intensity Prior Correction for
Tissue Segmentation in the Developing human Brain, In Proceedings of
IEEE ISBI 2011, pp. (to appear). 2011.
o
Fishbaugh, J., Durrleman, S.., Gerig,
G., Estimation of Smooth Growth Trajectories with Controlled Acceleration
from Time Series Shape Data, to appear MICCAI
2011, Springer Verlag LNCS, September 2011,
in print
o
Durrleman S, Prastawa M, Gerig G, Joshi S., Optimal data-driven sparse parameterization
of diffeomorphisms for population analysis,
Inf Process Med Imaging. 2011;22:123-34,
PMID: 21761651
2010 Peer reviewed journal papers
o
John H Gilmore,
Chaeryon Kang, Dianne D. Evans, Honor
M. Wolfe, J. Keith Smith, Jeffrey A. Lieberman, Weili
Lin, Robert M. Hamer, Martin Styner, Guido Gerig,
Prenatal and Neonatal Brain Structure and White Matter Maturation in Children
at High Risk for Schizophrenia, Am J Psychiatry. 2010 Sep;167(9):1083-91. Epub 2010 Jun 1.PMID:
20516153
o
Gilmore JH,
Schmitt JE, Knickmeyer RC, Smith JK, Lin W, Styner M, Gerig G, Neale MC., Genetic and environmental contributions to
neonatal brain structure: A twin study, Hum Brain Mapp.
2010 Aug;31(8):1174-82.PMID: 20063301
o
Mohamed El-Sayed, R. Grant Steen, Michele D. Poe, T. Carter
Bethea, Guido Gerig, Jeffrey Lieberman, and Linmarie Sikich, Deficits
in gray matter volume in psychotic youth with schizophrenia-spectrum disorders
are not evident in psychotic youth with mood disorders, J Psychiatry Neurosci. 2010 Jul;35(4):229-36.PMID: 20569649
o
Kevin Gorczowski, Martin Styner,
Ja Yeon Jeong, J. S. Marron,
Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer,
Guido Gerig, "Multi-object
Analysis of Volume, Pose, and Shape using Statistical Discrimination,"
Gorczowski K, Styner
M, Jeong JY, Marron
JS, Piven J, Hazlett
HC, Pizer SM, Gerig
G., IEEE Trans Pattern Anal Mach Intell. 2010 Apr;32(4):652-61.PMID: 20224121
<http://doi.ieeecomputersociety.org/10.1109/TPAMI.2009.92>
2010
Peer
reviewed full length conference papers
o
N. Sadeghi, M. Prastawa,
J. H. Gilmore, W. Lin, and G. Gerig,
"Spatio-Temporal Analysis
of Early Brain Development," in Proceedings IEEE Asilomar Conference on Signals, Systems & Computers,
Nov. 2010, IEEE catalog
No.: CFP10431-CDR, ISBN: 978-1-4244-9720-1, Nov. 2010, DOI: 10.1117/12.844526
o
Prastawa, M., Sadeghi, N., Gilmore, J., Lin, W., Gerig, G., A new framework
for analyzing white matter maturation in early brain development, In Proceedings
of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano
to Macro, pp. 97--100. April, 2010
o
Linh Ha, Marcel
Prastawa, Guido Gerig, John H. Gilmore, Claudio Silva, Sarang Joshi, Image Registration Driven by Combined Probabilistic and Geometric Descriptors, Med Image Comput Comput Assist
Interv. 2010;13(Pt
2):602-9.PMID: 20879365
o
Cassian Marc, Clement
Vachet, Joseph E. Blocher, Guido Gerig, John H. Gilmore,
Martin A. Styner, Changes of MR and DTI appearance
in early human brain development, SPIE Medical Imaging, February 2010
o
Zhexing Liu, Casey
Goodlett, Guido Gerig, Martin Styner,
Evaluation of DTI Property Maps as Basis of DTI Atlas Building, SPIE Medical
Imaging, February 2010
o
Zhexing Liu, Yi Wang,
Guido Gerig, Sylvain
Gouttard, Ran Tao, Thomas Fletcher, Martin
A. Styner, Quality control of diffusion weighted
images, SPIE Medical Imaging, February 2010
o
Neda Sadeghi, Marcel Prastawa,
John H. Gilmore, Weili Lin, Guido
Gerig, Towards Analysis of Growth
Trajectory through Multi-modal Longitudinal MR Imaging, SPIE Medical Imaging,
In SPIE Medical Imaging 2010: Image Processing, Vol. 7623, 76232U,
Edited by Benoit M. Dawant and David R. Haynor, pp. (published online). March, 2010. DOI:
10.1117/12.844526
2009 Peer reviewed journal papers
o
Heather Cody
Hazlett, Michele D. Poe, Amy A. Lightbody, Guido Gerig,
James R. MacFall, Allison K. Ross, James Provenzale, Arianna Martin, Allan L. Reiss and Joseph
Piven, Teasing apart the heterogeneity
of autism: Same behavior, different brains in toddlers with fragile X syndrome
and autism, Journal of Neurodevelopmental Disorders, Springer Verlag, Volume 1, Issue 1 (2009), Page 81
o
Prastawa M, Bullitt
E, Gerig G, Simulation
of brain tumors in MR images, Medical Image Analysis 13 (2009), pp. 297-311,
PMID: 19119055
o
Matthew W. Mosconi, Heather Cody Hazlett,
Michele D. Poe, Guido Gerig,
Rachel Gimpel Smith, and Joseph Piven, A longitudinal study of amygdala volume and
joint attention in 2-4 year old children with autism, Arch Gen Psychiatry. 2009 May;66(5):509-16. PMID: 19414710
o
Casey B. Goodlett, P. Thomas Fletcher, John H. Gilmore, and
Guido Gerig, Group Analysis
of DTI Fiber Tract Statistics with Application to Neurodevelopment, NeuroImage 45 (1) Supp. 1, 2009.p. S133-S142, PMID:
19059345
o
W. Gao, W. Lin, Y. Chen, G. Gerig, J.K. Smith, V. Jewells and J.H. Gilmore,
Temporal and Spatial Development of Axonal Maturation and Myelination of
White Matter in the Developing Brain, American Journal of Neuroradiology
(AJNR) 30:290-296, February 2009
o
Niyati Mukherjee,
Chaeryon Kang, Honor M. Wolfe, Barbara
S. Hertzberg, J. Keith Smith, Weili Lin, Guido Gerig, Robert M. Hamer,
John H. Gilmore, Discordance of Prenatal and Neonatal
Brain Development in Twins, Early Hum Dev.
2009 Mar;85(3):171-5, PMID: 18804925
o
Fan Zhang, Edwin
R. Hancock, Casey Goodlett and Guido
Gerig, Probabilistic White Matter
Fiber Tracking using, Particle Filtering and von Mises-Fisher
Sampling, Med Image Anal. 2009 Feb;13(1):5-18, PMID: 18602332
2009
Peer
reviewed full length conference papers
o
Sylvain Gouttard, Marcel Prastawa,
Elizabeth Bullitt, Casey Goodlett and Guido Gerig, Constrained Data
Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract
Diffusion Properties, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall
32%).
o
Manasi Datar, Joshua Cates, P. Thomas Fletcher, Sylvain Gouttard, Guido Gerig
and Ross Whitaker, Particle Based
Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging,
to appear Proc.
MICCAI 2009, Springer Verlag (32% acceptance
rate)
o
Spatiotemporal
Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets,
Stanley Durrleman, Xavier Pennec, A. Trouve, Guido Gerig, Nicholas Ayache, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall
32%).
o
Dingang Shen, Guido Gerig,
Weili Lin, Cortical Enhanced Tissue Segmentation
of Neonatal Brain MR Images Acquired by Dedicated Phased Array Coil, IEEE
CVPR-MMBIA workshop June 2009
o
Zhexing Liu, Hongtu Zhu, Bonita L. Marks, Laurence M. Katz, Casey
B. Goodlett, Guido Gerig, Martin Styner,
Voxel-wise group analysis of DTI, to appear IEEE proceedings ISBI 2009
(selected as oral, 10% acceptance rate, overall 50%)
2008
Peer reviewed journal papers
o
John H. Gilmore,
MD; Lauren Smith, BA, Honor Wolfe, MD; Barbara Hertzberg, MD; J. Keith
Smith, MD; Nancy Chescheir; Dianne Evans, Chaeryon Kang; Robert M. Hamer,
Weili Lin, Guido Gerig, Prenatal Mild Ventriculomegaly
Predicts Abnormal Development of the Neonatal Brain, Biol Psychiatry, 2008 Dec 15;64(12):1069-76, PMID:
18835482.
o
Rebecca C. Knickmeyer, Sylvain Gouttard,
Chaeryon Kang, Dianne Evans, Kathy Wilber,
Keith J. Smith, Robert M. Hamer, Weili Lin, Guido Gerig,
John H. Gilmore, A Structural MRI Study of Human Brain Development from
Birth to Two Years, J Neurosci.
2008 Nov 19;28(47):12176-82, PMID: 19020011.
o
Kubicki M, Styner M, Bouix S, Gerig G, Markant D, Smith K, Kikinis
R, McCarley RW, Shenton
ME. Reduced Interhemispheric Connectivity in
Schizophrenia- Tractography Based Segmentation
of the Corpus Callosum. /Schizophr Res/ Dec
2008;106(2-3):125-131.
o
W. Lin, Q. Zhu,
W. Gao, Y. Chen, C.-H.
Toh, M. Styner,
G. Gerig, J.K. Smith, B. Biswal and J.H. Gilmore, Functional Connectivity
MR Imaging Reveals Cortical Functional Connectivity in the Developing Brain,
American Journal of Neuroradiology (AJNR) 29:1883-1889, November-December
2008
o
Belmonte MK,
Mazziotta JC, Minshew
NJ, Evans AC, Courchesne E, Dager SR, Bookheimer
SY, Aylward EH, Amaral
DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE,
Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to
Put Heads Together in Autism Neuroimaging. J
Autism Dev Disord.
2008 Jan;38(1):2-13, PMID: 17347882
2008
Peer reviewed full length conference papers
o
A.Fedorov, E.Billet, M.Prastawa,
G.Gerig, A.Radmanesh, S.K.Warfield,
R.Kikinis, and N.Chrisochoides,
Evaluation of Brain MRI Alignment with the Robust Hausdorff
Distance Measures, accepted as oral presentation at ISVC08 (4th
Int. Symp. On Visual Computing), to appear
Springer LNCS Fall 2008
o
Marcel Prastawa and Guido Gerig, Brain Lesion Segmentation through Physical
Model Estimation, accepted as oral presentation at ISVC08 (4th
Int. Symp. On Visual Computing), to appear
Springer LNCS Fall 2008
o
Casey Goodlett, P. Thomas Fletcher, John Gilmore, and
Guido Gerig, Group Statistics
of DTI Fiber Bundles Using Spatial Functions of Tensor Measures, Proc.
MICCAI08, Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. 5241, Sept. 2008, pp. 1068 -- 1073,
nominated best paper award
o
Sylvain Gouttard, Martin Styner,
Marcel Prastawa, Joseph Piven, and Guido Gerig, Assessment of Reliability of Multi-site
Neuroimaging via Traveling Phantom Study, Proc. MICCAI08, Lecture Notes
in Computer Science LNCS, Springer Verlag,
Vol. 5242, Sept. 2008, pp. 263 -- 270
o
Shun Xu, Martin Styner, and
Guido Gerig, Multivariate Nonlinear Mixed Model to Analyze Longitudinal
Image Data: MRI Study of Early Brain Development, Proc. of IEEE
Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) 2008,
June 2008
o
Styner, M., Oguz, I., Heimann, T.,
Gerig, G., Minimum description length with
local geometry, Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008.
5th IEEE International Symposium on 14-17 May 2008 Page(s): 1283 - 1286
Digital Object Identifier 10.1109/ISBI.2008.4541238
o
Xu, Shun C. A.
Styner, Martin, Gilmore, John H. Gerig, Guido, Multivariate
longitudinal statistics for neonatal-pediatric brain tissue development,
Proc. of SPIE, Medical Imaging 2008: Im. Proc.,
Vol. #, pp. , Feb. 17, 2008
o
J. H. Gilmore,
W. Lin, I. Corouge, Y. S. K. Vetsa, J. K.Smith, Ch.
Kang, H. Gu, R.M. Hamer,
J. A. Lieberman, G. Gerig, Early
Postnatal Development of Corpus Callosum and Corticospinal
White Matter Assessed with Quantitative Tractography, AJNR Am J Neuroradiol. 2007
Oct;28(9):1789-95
o
Huang X, Lee
YZ, McKeown M, Gerig G, Gu
H, Lin W, Lewis MM, Ford S, Troster AI, Weinberger
DR, Styner , Asymmetrical ventricular enlargement in Parkinson's
disease. Mov Disord
2007 Aug 15;22(11):1657-60
o
Belmonte MK,
Mazziotta JC, Minshew
NJ, Evans AC, Courchesne E, Dager SR, Bookheimer
SY, Aylward EH, Amaral
DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE,
Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to
Put Heads Together in Autism Neuroimaging. J Autism Dev Disord 2007 Mar
9;():
o
Taylor WD, MacFall
JR, Gerig G, Krishnan KR. Structural
integrity of the uncinate fasciculus in geriatric
depression: Relationship with age of onset. Neuropsychiatric Disease and
Treatment 2007; 3(5):669-674
o
Carissa J. Cascio, Guido Gerig
and Joseph Piven, Diffusion Tensor Imaging:
Application to the Study of the Developing Brain, J Am Acad Child Adolesc Psychiatry.
2007 Feb;46(2):213-23
o
Gilmore JH,
Lin W, Prastawa MW, Looney CB, Vetsa YSK, Knickmeyer
RC, Evans DD, Smith JK, Hamer RM, Lieberman
JA, Gerig G. Regional gray matter growth, sexual
dimorphism, and cerebral asymmetry in the neonatal brain. Journal of Neuroscience
2007;27(6):1255-1260. Acrobat Reader
format [1106kb]
Original Artible Journal of Neuroscience
Special Feature
J Neuroscience
Medical News
Today
UNC News Feb
7, 2007
UNC School of
Public Health
2007
Peer reviewed full length conference papers
o
Goodlett, Casey , Fletcher,
P. Thomas , Lin, Weili , and Gerig, Guido, "Quantification of measurement error
in DTI: Theoretical predictions and validation", Proc. MICCAI07,
Springer LNCS 4792, Nov. 2007, pp. 10-17
o
Fan Fan Zhang, Casey Goodlett,
Edwin Hancock, Guido Gerig, "Probabilistic
White Matter Fiber Tracking using Particle Filtering", accepted CVPR workshop
EMMCVPR 2007
o
Fan Zhang et
al., Probabilistic White Matter Fiber Tracking using Particle Filtering,
Proc. MICCAI
2007, Springer LNCS 4791, Nov. 2007, pp. 144-151
o
Terriberry, Timothy B.,
Damon, James N., Pizer, Stephen M., Joshi, Sarang C. and Gerig,
Guido, "Population-based Fitting of Medial Shape Models with Correspondence
Optimization", in Proceedings IPMI'07, Information Processing in
Med Imaging, Springer LNCS, 2007;20():700-12
o
Kevin Gorczowski, Martin Styner,
Ja Yeon Jeong, J. S. Marron,
Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer,
Guido Gerig, Statistical Shape Analysis of
Multi-Object Complexes, Proc. CVPR07,
IEEE Press
o
C. B. Goodlett, P. T. Fletcher, W. Lin, and G. Gerig, Noise-induced bias in low-direction diffusion
tensor MRI: Replication of Monte-Carlo simulation with in-vivo scans, short
paper Proc. ISMRM 2007
o
D Nain, M Styner, M Niethammer,
J J Levitt, M E Shenton,
G Gerig, A Bobick,
A Tannenbaum, Statistical shape analysis of
brain structures using spherical wavelets, Proc. ISBI 2007, IEEE press
o
Martin Styner, Shun Xu, Mohammed
El-Sayed, Guido Gerig,
Correspondence Evaluation in local shape analysis and structural subdivision,
Proc. ISBI 2007, IEEE press
o
Kevin Gorczowski, Martin Stynera,
Ja Yeon Jeonga, J. S. Marron,
Joseph Piven, Heather Cody, Hazlett, Stephen M. Pizer,
Guido Gerig, Discrimination Analysis using
Multi-object Statistics of Shape and Pose, Proc. SPIE
conference, January 2007
o
Sylvain Gouttard, Martin Styner,
Sarang Joshi, Rachel G. Smith, Heather
Cody, Guido Gerig, Subcortical structure segmentation
using probabilistic atlas prior, Proc. SPIE conference, Feb. 2007
o
M. Styner, I. Oguz, S. Xu, D. Pantazis, and G.
Gerig. Statistical group differences
in anatomical shape analysis using hotelling
T2 metric. Proc SPIE Medical Imaging Conference,
Feb. 2007.
2006
Peer reviewed journal papers
o
John H. Gilmore,
Weili Lin, and Guido Gerig, IMAGES IN NEUROSCIENCE: Fetal and Neonatal
Brain Development, Am J Psychiatry, Dec 2006; 163: 2046. Acrobat Reader
format [132kb]
o
Carissa J. Cascio, Martin Styner,
Rachel G. Smith, Michele D. Poe, Guido Gerig,
Heather C. Hazlett, Matthieu
Jomier, Roland Bammer,
and Joseph Piven, Tractography-based
segmentation of the corpus callosum reveals a reduced relationship to
cortical white matter volume in young children with developmental delay,
Am J Psychiatry, Dec 2006; 163: 2157 - 2163 Acrobat Reader
format [199Kb]
o
Carissa J. Cascio, Guido Gerig and
Joseph Piven, Diffusion Tensor Imaging: Application
to the Study of the Developing Brain, in print Journal of the American
Academy of Child and Adolescent Psychiatry JAACAP, August 2006 Acrobat Reader
format [970kb]
o
Isabelle Corouge, P.Thomas Fletcher,
Sarang Joshi, Sylvain Gouttard, Guido Gerig,
Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis,
Medical Image Analysis 10 (2006), 786 - 798 Acrobat Reader
format [914kb]
PubMed
Entry
o
Yushkevich, PA, Piven, J., Cody Hazlett,
H., Gimpel Smith, R., Ho, S, Gee, J.J.Gerig, G.; User-Guided 3D Active Contour Segmentation
of Anatomical Structures: Significantly Improved Efficiency and Reliability,
NeuroImage 31 (2006) 1116 - 1128 Acrobat Reader
format [983Kb]
PubMed
Entry
Link
to Elsevier Direct
o
Heather Cody
Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel
Smith and Joseph Piven, Cortical Gray and White
Brain Tissue Volume in Adolescents and Adults with Autism, Biological Psychiatry,
Volume 59, Issue 1, Pages 1-96 (1 January 2006) Acrobat Reader
format [1.5Mb]
PubMed
Entry
o
Peter Lorenzen, Marcel Prastawa,
Brad Davis, Guido Gerig, Elizabeth Bullitt,
and Sarang Joshi, Multi-Modal Image Set Registration
and Atlas Formation, Medical Image Analysis MEDIA, Elsevier, Vol 10 issue 3, pp 440-451,
May 2006 Acrobat Reader
format [600Kb]
PubMed
Entry
2006
Peer reviewed full length conference papers
o
Oguz, Ipek, Gerig, Guido, Barre, Sebastien, Styner, Martin, A Quantitative KWMeshVisu: A Mesh Visualization Tool for Shape
Analysis, 2006, ISC/NA-MIC Workshop on Open Science at MICCAI 2006, Online
publication: http://hdl.handle.net/1926/220
o
Styner, M. and Oguz, I. and Xu, S.
and Brechbuhler, C. and Pantazis, D. and Levitt, J. and Shenton, M. and Gerig,
G.:Framework for the Statistical Shape
Analysis of Brain Structures using SPHARM-PDM, Open Science Workshop at
MICCAI 2006, Kopenhagen, published at Insight
Journal DSpace link: http://hdl.handle.net/1926/215
o
Martin Styner, Kevin Gorczowski,
Tom Fletcher, Ja Yeon
Jeong, Stephen M. Pizer,
Guido Gerig, Multi-Object Statistics using Principal
Geodesic Analysis in a Longitudinal Pediatric Study, Lecture Notes in Computer
Science LNCS No. 4091, G-Z Yang, T. Jiang, D. Shen,
L. Gu and J. Yang, editors, Springer Verlag, Proc. MIAR conference, pp. 1 - 8, August
2006 Acrobat Reader
format [807Kb]
o
Timothy B. Terriberry and Guido Gerig,
A Continuous 3-D Medial Shape Model With Branching, International Workshop
on Mathematical Foundations of Computational Anatomy MFCA-2006, in conjunction
with MICCAI 2006 MFCA-2006
Acrobat Reader
format [807Kb]
o
Improved Correspondence
for DTI Population Studies via Unbiased Atlas Building Casey Goodlett, Brad Davis, Remi
Jean, John Gilmore, and Guido Gerig, Lecture
Notes in Computer Science LNCS, Medical Image Computing and Computer-Assisted
Intervention, Springer Verlag, Vol. 4191, Oct.
2006, pp. 260 - 267 Acrobat Reader
format [1.17Mb]
o
Computational
Anatomy to Assess Longitudinal Trajectory of Brain Growth, G. Gerig, B. Davis, P. Lorenzen,
Sh. Xu, M. Jomier,
J. Piven and S. Joshi, to appear Proc. 3DPVT,
June 2006 Acrobat Reader
format [1.78Mb]
o
Shun Xu, Martin Styner, Brad
Davis, Sarang Joshi, Guido Gerig, Group Mean Differences of Voxel and Surface
Objects via Nonlinear Averaging, in IEEE International Symposium on Biomedical
Imaging (ISBI), pp. 758-761, Apr. 2006 Acrobat Reader
format [416Kb]
o
Guido Gerig, Sarang Joshi, Tom
Fletcher, Kevin Gorczowski, Shun Xu, Stephen M. Pizer,
Martin Styner, "Statistics of populations of
images and its embedded objects: Driving applications in neuroimaging",
in IEEE International Symposium on Biomedical Imaging (ISBI), special session
Shape in Imaging, pp. 1120-1123, Apr. 2006 Acrobat Reader
format [1.19Mb]
o
Martin Styner, Matthieu Jomier, and Guido Gerig,
Closed and open source neuroimage analysis
tools and libraries at UNC, in IEEE International Symposium on Biomedical
Imaging (ISBI), special session Open Source, pp. 702-705, Apr. 2006. Acrobat Reader
format [188Kb]
2005
Peer reviewed journal papers
o
Matthew J. Hoptman, Jan Volavka,
Elisabeth M. Weiss, Pál Czobor, Philip R. Szeszko,
Guido Gerig, Miranda Chakos,
Joseph Blocher, Leslie L. Citrome , Jean-Pierre Lindenmayer,
Brian Sheitman, Jeffrey A. Lieberman and Robert
M. Bilder, Quantitative MRI Measures of Orbitofrontal
Cortex in Patients with Chronic Schizophrenia or Schizoaffective Disorder
in print Psychiatry Research, Neuroimaging
o
Amy Pinkham,
David Penn, Bethany Wangelin, Diana Perkins,
Guido Gerig, Hongbin
Gu, and Jeffrey Lieberman, Facial Emotion
Perception and Fusiform Gyrus Volume in First
Episode Schizophrenia, Schizophrenia Research, in print
o
Marcel Prastawa, John H. Gilmore, Weili
Lin, Guido Gerig, Automatic Segmentation of
MR Images of the Developing Newborn Brain, Medical Image Analysis (MedIA). Vol 9, October
2005, pages 457-466 Acrobat Reader
format [800Kb]
Link
to Elsevier Direct
o
Hazlett, Heather Cody,
Poe, Michele, Gerig, Guido, Smith, Rachel, Provenzale, Jim, Ross, Allison, Gilmore, John H.
and Piven, Joseph, Magnetic Resonance Imaging
and Head Circumference Study of Brain Size in Autism, Birth Through Age
2 Years, Arch Gen Psychiatry. 2005;62:1366-1376 Acrobat Reader
format [800Kb]
o
Elizabeth
Bullitt, Donglin Zeng,
Guido Gerig, Stephen Aylward,
Sarang Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend,
Vessel Tortuosity and Brain Tumor Malignancy: A Blinded Study, Academic
Radiology, 12:1232-1240, 2005 Abstract/Full
Text
o
Martin Styner, Jeffrey A. Lieberman, Robert McClure, Daniel
Weinberger, Douglas Jones, Guido Gerig, Morphometric
analysis of lateral ventricles in schizophrenia and healthy controls regarding
genetic and disease-specific factors (in print Proc. National Academy of
Science PNAS, Feb. 2005) Acrobat Reader
format [611Kb] // PNAS Abstract News
reports about this paper: Lichtblicke (German) Bild der Wissenschaft (German)
2005
Peer reviewed full length conference papers
o
Yushkevich Paul A., Piven Joseph, Cody Heather, Ho Sean, Gee James C.,
Gerig Guido, User-Guided Level Set Segmentation
of Anatomical Structures with ITK-SNAP, The Insight Journal, vol. ISC/NAMIC/
MICCAI Workshop on Open-Source Software, 2005, Online publication: Download
o
C. Goodlett, I. Corouge,
M. Jomier, and G. Gerig,
A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol.
ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication:
Download
o
Corouge, I., Fletcher,
T., Joshi, S., Gilmore J.H., and Gerig, G.,
Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis,
Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag,
Vol. 3749, Oct. 2005, pp. 131 -- 138 Acrobat Reader
format
o
Prastawa, M., Bullitt,
E. and Gerig, G., Synthetic Ground Truth for
Validation of Brain Tumor MRI Segmentation, Lecture Notes in Computer Science
LNCS, James S. Duncan and Guido Gerig, editors,
Springer Verlag, Vol. 3749, Oct. 2005, pp. 26
-- 33 Acrobat Reader
format
o
Mortamet, B., Donglin, Z., Gerig,
G., Prastawa, M. and Bullitt, E., Effects of
healthy aging measured by intracranial compartment volumes using designed
MR brain database, Lecture Notes in Computer Science LNCS, James S. Duncan
and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 383 -- 391 Acrobat Reader
format
o
Terriberry, T., Joshi
S., and Gerig, G., Hypothesis Testing with Nonlinear
Shape Models, Lecture Notes in Computer Science LNCS, Gary E. Christensen
and Milan Sonka, editors, Springer Verlag, Vol. 3565, July. 2005, pp. 15 -- 26 Acrobat Reader
format
2004
Peer reviewed journal papers
o
Elizabeth
Bullitt, Matthew G. Ewend, Stephen Aylward, Weili Lin, Guido
Gerig, Sarang
Joshi, Inkyung Jung, Keith Muller, Keith Smith,
Abnormal vessel tortuosity as a marker of treatment response of malignant
gliomas: Preliminary report Technology
in Cancer Research and Treatment TCRT, Volume 3 No. 6 (p 525-670) Dec 2004
o
MH Chakos, SA Schobel, H
Gu, G Gerig,
D Bradford, C Charles, and J Lieberman, "Duration of illness and treatment
effects on hippocampal volume in male patients with schizophrenia," British
Journal of Psychiatry, vol. 186, no. , pp. 26-31, 2005. Acrobat Reader
format [168Kb]
o
Sarang Joshi, Brad
Davis, Matthieu Jomier,
and Guido Gerig, "Unbiased Diffeomorphic Atlas Construction for Computational
Anatomy," NeuroImage; Supplement issue on Mathematics
in Brain Imaging, (PM Thompson, MI Miller, T Ratnanather,
RA Poldrack, and TE Nichols, eds.), vol. 23,
no. Supplement1, pp. S151-S160, Elsevier, Inc,
2004. Acrobat Reader
format [800Kb]
o
John H. Gilmore,
Guihua Zhai,
Kathy Wilber, J. Keith Smith, Weili Lin, and
Guido Gerig, "3 Tesla magnetic resonance imaging
of the brain in newborns," Psychiatric Research Neuroimaging, vol. 132,
no. , pp. 81-85, Elsevier, 2004. Acrobat Reader
format [190Kb]
o
Martin Styner, Jeffrey A. Lieberman, Dimitrios Pantazis and
Guido Gerig, "Boundary and Medial Shape Analysis
of the Hippocampus in Schizophrenia", Medical Image Analysis MEDIA, Elsevier,
Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 197-203
Acrobat Reader
format [840Kb]
o
Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "A Brain Tumor Segmentation Framework Based
On Outlier Detection", Medical Image Analysis MEDIA, Elsevier, Edited by
R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 275-283 Acrobat Reader
format [840Kb]
o
Cevidanes, L.H.S., Franco,
A.A., Gerig, G., Proffit,
W.R., Slice, D.E., Enlow, D.H., et al (2005).
Comparison of relative mandibular growth vectors with high-resolution 3-dimensional
imaging.Am J Orthod
Dentofacial Orthop,
128:27-34.
o
Cevidanes, L.H.S., Franco,
A.A., Gerig, G., Proffit,
W.R., Slice, D.E., Enlow, D.H., et al (2005).
Assessment of mandibular growth and response to orthopedic therapy with
3-dimensional magnetic resonance images. Am
J Orthod Dentofacial
Orthop, 128:16-26.
2004
Peer reviewed full length conference papers
o
Guido Gerig, Sylvain Gouttard,
and Isabelle Corouge, "Analysis of Brain White
Matter via Fiber Tract Modeling", IEEE Engineering in Medicine and Biology
EMB 2004: Abstract p. 426, full paper IEEE Catalog No: 04CH37558C, ISBN:
0-7803-8440-7 Acrobat Reader
format [4.2Mb]
o
Isabelle Corouge, Sylvain Gouttard,
and Guido Gerig, "A Statistical Shape Model
of Individual Fiber Tracts Extracted from Diffusion Tensor MRI", Lecture
Notes in Computer Science LNCS 3217, Springer Verlag,
pp. 671-679, 2004 Acrobat Reader
format [2.7Mb]
o
Marcel Prastawa, John Gilmore, Weili
Lin, and Guido Gerig, "Automatic Segmentation
of Neonatal Brain MRI", Lecture Notes in Computer Science LNCS 3216,
Springer Verlag, pp. 10-17, 2004 Acrobat Reader
format [300Kb]
o
Sean Ho, Guido
Gerig, "Profile Scale-spaces for Multiscale Image Match", Lecture Notes in Computer
Science LNCS 3216, Springer Verlag, pp. 176-183,
2004 Acrobat Reader
format [310Kb]
o
Peter Lorenzen, Brad Davis, Guido Gerig,
Elizabeth Bullitt and Sarang Joshi, "Multi-class
Posterior Atlas Formation via Unbiased Kullback-Leibler
Template Estimation", Lecture Notes in Computer Science LNCS 3216, Springer
Verlag, pp. 95-102, 2004 Acrobat Reader
format [270Kb]
o
Elizabeth
Bullitt, Inkyung Jung, Keith Muller, Guido Gerig, Stephen Aylward,
Sarang Joshi, Keith Smith, Matthew Ewend, "Determining Malignancy of Brain Tumors By
Analysis of Vessel Shape", Lecture Notes in Computer Science LNCS 3217,
Springer Verlag, pp. 645-653, 2004 Acrobat Reader
format [320Kb]
o
Corouge, Isabelle,
Gouttard, Sylvain and Gerig, Guido, "Towards a Shape Model of White Matter
Fiber Bundles using Diffusion Tensor MRI" , International Symposium on
Biomedical Imaging (ISBI'04), (Piscataway, NJ), pp. 344-347, April 2004
Acrobat Reader
format [0.75Mb]
o
Martin Styner and Guido Gerig,
"Shape Analysis of Anatomical Structures corrected for Multiple Correlated
Statistical Tests", Proc. of SPIE, Medical Imaging 2004: Image Processing,
Milan Sonka,J. Michael Fitzpatrick, Eds., Vol.
#5370, pp. 233-240, Feb. 2004 Acrobat Reader
format [400Kb] Abstract w.
full reference
2003
Peer reviewed journal papers
o
Prastawa, Marcel, and
Moon, Nathan, and Bullitt, Elizabeth, and van Leemput,
Koen and Gerig,
Guido, Automatic Brain and Tumor Segmentation, Academic Radiology, Vol.
10 pp. 1341-1348 Dec. 2003 Acrobat Reader
format [320Kb]
o
Bullitt, Elizabeth,
and Gerig, Guido, and Pizer,
Stephen M., and Lin, Weili and Aylward, Stephen R. Automatic Measuring Tortuosity
of the Intracerebral Vasculature from MRA Images,
IEEE Transactions on Medical Imaging TMI, Vol
22, No 9, Sept. 2003, pp. 1163-1171
o
Stephen M. Pizer, Guido Gerig, Sarang Joshi, Stephen R. Aylward,
Multiscale Medial Shape-Based Analysis of Image
Objects, Proceedings of the IEEE, Special Isasue
on: Emerging Medical Imaging Technology, Vol. 91, No. 10, pp. 1670-1679,
October 2003 Acrobat Reader
format [730Kb]
o
Guihuao Zhai, Weili Lin, Kathy
Wilber, Guido Gerig, and John Gilmore, "Comparison
of Regional White Matter Diffusion in Healthy Neonate and Adults Using
a 3T Head-only MR Scanner", Radiology:229, 2003, pp. 673-681 Acrobat Reader
format [330Kb]
o
M. Styner, G. Gerig, Steve
Pizer, Sarang
Joshi, "Automatic and Robust Computation of 3D Medial Models Incorporating
Object Variability", International Journal of Computer Vision (IJCV), O.
Faugeras, K. Ikeuchi,
and J. Ponce, eds., Vol. 55, No. 2/3, Nov/Dec 2003, pp. 107-122 Acrobat Reader
format [330Kb]
o
M. Styner, G. Gerig, J. Lieberman,
D. Jones, D. Weinberger, "Statistical shape analysis of neuroanatomical
structures based on medial models". Medical Image Analysis (MEDIA, Elsevier),
Vol. 7 No. 3, Sept. 2003, pp. 207-220 Acrobat Reader
format [6Mb]
o
S. Joshi, P.
Lorenzen, G. Gerig,
and E. Bullitt, "Structural and Radiometric Asymmetry in Brain Images",
Medical Image Analysis Journal, Volume 7, Issue 2, Pages 155-170, Elsevier
Science, June 2003.
2003
Peer reviewed full length conference papers
o
Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "Robust Estimation for Brain Tumor Segmentation",
Lecture Notes in Computer Science LNCS #2879, pp. 530-537, Nov. 2003 Acrobat Reader
format [465Kb]
o
Pierre Fillard, John Gilmore, Weili
Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber
Properties along Geodesic Paths", Lecture Notes in Computer Science LNCS
#2879, pp. 16-23, Nov. 2003 Acrobat Reader
format [525Kb] MICCAI'03
Award: Best Student Paper Image Processing and Visualization
o
Guido Gerig, Keith E. Muller, Emily O. Kistner, Yueh-Yun Chi,
Miranda Chakos, Martin Styner, Jeffrey A. Lieberman, "Age and treatment
related local hippocampal changes in schizophrenia explained by a novel
shape analysis method", Lecture Notes in Computer Science LNCS #2879, pp.
653-660, Nov. 2003 Acrobat Reader
format [525Kb]
o
Martin Styner, Jeffrey A. Lieberman, and Guido Gerig, "Boundary and Medial Shape Analysis of the
Hippocampus in Schizophrenia", Lecture Notes in Computer Science LNCS
#2879, pp. 464-471, Nov. 2003 Acrobat Reader
format [525Kb]
o
Y. Sampath K. Vetsa, Martin
Styner, Stephen M. Pizer, Jeffrey A. Lieberman, Guido Gerig, "Caudate shape discrimination in schizophrenia
using template-free nonparametric tests", Lecture Notes in Computer Science
LNCS #2879, pp. 671-679, Nov. 2003 Acrobat Reader
format [300Kb]
o
Elizabeth
Bullitt, Guido Gerig, Stephen Aylward, Sarang Joshi,
Keith Smith, Matthew Ewend, and Weili Lin, "Vascular Attributes and Malignant Brain
Tumors", Lecture Notes in Computer Science LNCS #2878, pp. 661-669, Nov.
2003 Acrobat Reader
format [216Kb]
o
Pierre Fillard and Guido Gerig,
"Analysis Tool For Diffusion Tensor MRI", SHORT PAPER, Lecture Notes
in Computer Science LNCS #2879, pp. 967-968, Nov. 2003 Acrobat Reader
format [653Kb]
o
Guido Gerig, Marcel Prastawa,
Weili Lin and John Gilmore, "Assessing
Early Brain Development in Neonates by Segmentation of High-Resolution
3T MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp.
979-980, Nov. 2003 Acrobat Reader
format [410Kb]
o
Sean Ho and
Guido Gerig, "Scale-Space on Image Profiles
About an Object Boundary", in Scale Space, Lecture Notes in Computer Science
LNCS-2695, pp. 564-575, Springer, July 2003 Acrobat Reader
format [785Kb]
2002
Peer reviewed journal papers
o
Pizer, Stephen M.
and Fletcher, Thomas and Thall, Andrew and
Styner, Martin and Gerig, Guido and Joshi, Sarang,
Object Models in Multiscale Intrinsic Coordinates
via M-reps, image and vision computing "ivc",
Vol. 21, Nr. 1, pp. 5-15, Jan. 2002 Acrobat Reader
format [600Kb]
o
M.E. Shenton, G. Gerig, R.W.
McCarley, G. Szekely,
R. Kikinis. "Amygdala-Hippocampus Shape Differences
in Schizophrenia: The application of 3D shape models to volumetric MR
data", Psychiatry Research Neuroimaging, 2002, 115:15-35 Acrobat Reader
format [1.6Mb] Selected
for: 2004 IMIA Yearbook of Medical Informatics, Schattauer
Publishing Company, Stuttgart, Germany
2002
Peer reviewed full length conference papers
o
Guido Gerig and Martin Styner,
Statistical Shape Models for Segmentation and Structural Analysis, invited
paper by IEEE International Symposium on Biomedical Imaging (ISBI 2002),
Macro to Nano, July 2002 Acrobat Reader
format [480Kb]
o
Moon, Nathan,
and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido,
Automatic Brain and Tumor Segmentation, Proc. Medical Image Computing and
Computer-Assisted Intervention MICCAI 2002, T. Dohi
and R. Kikinis (Eds.), Lecture Notes in Computer
Science 2488, September 2002 Acrobat Reader
format [540Kb]
o
Pizer, Stephen M.
and Fletcher, Thomas and Thall, Andrew and
Styner, Martin and Gerig, Guido and Joshi, Sarang,
Object Models in Multiscale Intrinsic Coordinates
via M-reps, accepted GMBV 2002 (Workshop: Generative Model-Based Vision,
ECCV2002) Acrobat Reader
format [600Kb]
o
Sean Ho, Elizabeth
Bullitt, and Guido Gerig , Level Set Evolution
with Region Competition: Automatic 3-D Segmentation of Brain Tumors, Proc.
16th Int Conf on
Pattern Recognition ICPR 2002, IEEE Computer Society, editors: R. Kasturi, D. Laurendeau,
C. Suen, Aug 2002, pp. 532-535 Acrobat Reader
format [750Kb]
o
Nathan Moon,
Elizabeth Bullitt, Koen van Leemput, and Guido Gerig,
Model-Based Brain and Tumor Segmentation, Proc. 16th Int Conf on Pattern
Recognition ICPR 2002, editors: R. Kasturi,
D. Laurendeau, C. Suen,
IEEE Computer Society, Aug.2002, pp. 528-531 Acrobat Reader
format [410Kb]
o
M. Styner, C. Charles, J. Park, G. Gerig, Multisite validation of image analysis methods
- Assessing intra and inter site variability, Proc. SPIE Vol. 4684, p.278-286,
Medical Imaging 2002: Image Processing, Milan Sonka,J.
Michael Fitzpatrick, Eds., Feb. 2002 Acrobat Reader
format [0.5Mb] Abstract w.
full reference
2001
Peer reviewed journal papers
o
J.H. Gilmore,
G. Gerig, B. Specter, C. Charles, J. Wilber,
B. Herzberg, M.A. Kliewer, Neonatal Cerebral
Ventricle Volume: A Comparison of 3D Ultrasound and Magnetic Resonance
Imaging, Ultrasound in Med.& Biol.,27(8), pp. 1143-1146, 2001 Acrobat Reader
format [98Kb]
o
E. Bullitt,
S. Aylward, E. Bernard, and G. Gerig, Computer assisted Visualization of Arteriovenous Malformations on the Home Personal
Computer, Neurosurgery, Vol. 48, No. 3, March 2001
2001
Peer reviewed full length conference papers
o
G. Gerig, M. Styner, D. Jones,
D. Weinberger, and J. Lieberman, Shape Analysis of brain ventricles using
SPHARM, in Proc. Workshop on Mathematical Methods in Biomedical Image
Analysis, Proc. MMBIA 2001, IEEE Computer Society, pp. 171-178, Dec. 2001
Acrobat Reader
format [1Mb]
o
M. Styner and G. Gerig,
Three-dimensional medial shape representation incorporating object variability,
in Proc. Computer Vision and Pattern Recognition CVPR 2001, IEEE Computer
Society, pp. 651-656, Dec. 2001 Acrobat Reader
format [2.6Mb]
o
G Gerig, M Styner, ME Shenton, JA Lieberman, Shape versus Size: Improved
Understanding of the Morphology of Brain Structures, Proc. MICCAI 2001,
Lecture Notes in Computer Science 2208, pp. 24-32, Oct. 2001 Acrobat Reader
format [475Kb]
o
G Gerig, M Jomier and M
Chakos, VALMET: A new validation tool for
assessing and improving 3D object segmentation, Proc. MICCAI 2001, Lecture
Notes in Computer Science 2208, pp. 516-523, Oct. 2001 Acrobat Reader
format [170Kb]
o
M. Styner and G. Gerig, Medial
models incorporating object variability for 3D shape analysis, Proc. IPMI
2001, LLNCS 2082, Springer, pp. 502-516, June 2001 Acrobat at Springer Acrobat Reader
format [6.9Mb]
o
D. Welti, G. Gerig, E-W.
Radue, L. Kappos,
and G. Szekely, Spatio-temporal
Segmentation of Active Multiple Scleroris Lesions
in Serial MRI Data, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 438-445,
June 2001 Acrobat at Springer Acrobat Reader
format [6.9Mb]
2000
and earlier
Peer
reviewed journal papers
o
M. Styner, G. Gerig, Christian
Brechbuehler and Gabor Szekely, Parametric estimate of intensity inhomogeneities applied to MRI, IEEE TMI 19(3),
pp. 153-165, 2000 Acrobat Reader
format [1.45Kb]
o
Gerig, Guido and
Welti, Daniel and Guttmann, Charles and
Colchester, Alan and Szekely, Gábor, Exploring the discrimination power of the
time domain for segmentation and characterization of lesions in serial MR
data}, Medical Image Analysis (MEDIA), Elsevier, Vol. 4, No. 1, March 2000,
pp. 31-42 Acrobat Reader
format [900Kb]
o
A. Kelemen, G. Szekely, and
G. Gerig, Elastic Model-Based Segmentation of
3-D Neuroradiological Data Sets, IEEE-TMI, Oct.
1999, 18(10):828-839 Acrobat Reader
format [1.3Kb] Original TMI
Acrobat format [0.62Kb]
o
G. Szekely, A. Kelemen, Ch.
Brechbuehler and G. Gerig, Segmentation of 3D objects from MRI volume
data using constrained elastic deformations of flexible Fourier surface
models, Medical Image Analysis (MEDIA), Vol. 1, No. 1, March 1996, pp.
19-34 gzipped PS-file [4.4Mb]
/ Acrobat Reader
format [3.1Mb]
o
Ch. Brechbühler, G. Gerig
and O. Kübler, Parametrization
of closed surfaces for 3-D shape description, Computer Vision Image Understanding
CVIU, Vol. 61, pp. 154-170, March 1995 Acrobat Reader
format [5.1Mb] / Acrobat Reader
format, 2pages per sheet [5.2Mb]
Peer
reviewed full length conference papers
o
M. Styner and G. Gerig, Hybrid
boundary-medial shape description for biologically variable shapes, Proc.
of IEEE workshop MMBIA 2000, IEEE, pp. 235-242, June 2000 Acrobat Reader
format [2.5Mb]
o
M. Styner and G. Gerig, Brain
morphometry by distance measurement in
non-Euclidean, curvilinear space, Proc. of IPMI 1999, Springer, LLNCS 1613,
pp. 235-242, June 1999 Acrobat Reader
format [985Kb]
o
Martin Berger
and Guido Gerig, Motion measurements in low
contrast X-ray imagery, Lecture Notes in Computer Science 1496, Proc. of
MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 832-841, Oct. 1998 Acrobat Reader
format [640Kb]
o
Gerig, Guido and
Welti, Daniel and Guttmann, Charles and
Colchester, Alan and Szekely, Gabor, Exploring
the discrimination power of the time domain for segmentation and characterization
of lesions in serial MR data}, Lecture Notes in Computer Science 1496,
Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 469-480, Oct. 1998 Acrobat Reader
format [1Mb]
o
Dimitrios Ekatodramis, Gabor Szekely
and Guido Gerig, Detecting and Infering Brain Activation from functional MRI by
Hypothesis-Testing based on the Likelihood Ratio, Lecture Notes in Computer
Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester,
Scott Delp, 578-589, Oct. 1998 Acrobat Reader
format [385Kb]
o
James S. Duncan
and Guido Gerig, "Medical Image Computing and
Computer-Assisted Intervention -- MICCAI 2005", Lecture Notes in Computer
Science LNCS, Springer Verlag, Vol. LNCS 3749
and 3750
o
Lin, Weili, An, Hongy, Chen,
Yasheng, Nicholas, Peter, Zhai, GuiHua, Gerig, Guido, Gilmore, John, and Bullitt, Elizabeth,
"Practical Consideration for 3T imaging" , Magn
Reson Imaging Clin
N Am (W.B. Saunders Company, Elsevier), 11(2003), 615-639 (Book Chapter)
o
Gerig, Guido and
Welti, Daniel and Guttmann, Charles and
Colchester, Alan and Szekely, Gabor, Exploring
the discrimination power of the time domain for segmentation and characterization
of lesions in serial MR data, TO BE UPDATED, 2002
o
Guido Gerig, Gabor Szekely,
Cyril Burger, Digital Image Processing for functional analysis, in Functional
Imaging - Principles and Methods, edited by von Schulthess,
Gustav Konrand and Hennig,
Jurgen, Lippincott-Raven Publishers, 1998,
pp. 115-156
o
Gabor Szekely, Thomas Koller,
Ron Kikinis, and Guido Gerig,
Structural description and combined 3-D display for superior analysis of
cerebral vascularity from MRA, in Medical Imaging, L. Beolchi and M.H. Kuhn, editors, Studies in Health
Technology and Informatics, Vol. 19, IOS Press, 1995, pp. 183-194
o
Ross Whitaker
and Guido Gerig, Vector-valued diffusion, pp.
93-134, in: Geometry-Driven Diffusion in Computer Vision, edited by Bart
M. ter Haar Romeny, Kluwer Academic Publishers, Series on Computational
Imaging and Vision, Volume 1, October 1994
Technical
Reports
o
Statistical
analysis of diffusion tensor image data based on first principles Matthew
Gribbin, Meagan Clement, Keith Muller,
Michele Poe, Carissa Cascio, Matthew Jomier, Joseph Piven,
and Guido Gerig, March 2006
o
Statistics of
Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis
Martin Styner, Kevin Gorczowski,
Tom Fletcher, Ja Yeon
Jeong, Stephen M. Pizer,
Guido Gerig, March 2006
o
Sean Ho and
Guido Gerig, Profile Scale Spaces for Statistical
Image Match, UNC Technical Report, Jan. 2004
o
Pierre Fillard, John Gilmore, Weili
Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber
Properties along Geodesic Paths", UNC Technical Report, Jan. 2004
o
Sean Ho, Heather
Cody, Guido Gerig, "SNAP: A Software Package
for User-Guided Geodesic Snake Segmentation", Technical Report, April 2003
Acrobat Reader
format [1.5Mb]
o
Sean Ho and
Guido Gerig, "Profile Scale-Space for Image
Segmentation", Technical Report UNC CS, March 2003
o
Ho, Sean and
Kim, Yongjik and Bullitt, Elizabeth and Gerig, Guido, Medical image segmentation by 3-D level
set evolution, Technical Report UNC Chapel Hill, March 1, 2002 Acrobat Reader
format [840Kb]
Abstracts
(back to 2001)
·
Rebecca C. Knickmeyer, Y. Sampath
K. Vetsa, Weili Lin,
Dianne Evans, Kathy Wilber, Keith J. Smith, Guido Gerig,
John H. Gilmore A Structural MRI Study of Human Brain Development from
Birth to Age 2, accepted abstract /oral presentation SOBP 2007 (Society
of Biological Psychiatry)
·
John H. Gilmore,
Isabelle Corouge, Weili
Lin, Guido Gerig Early Development of White
Matter Tracts in the Normal Neonate Assessed with High resolution DTI and
Quantitative Tractography, accepted abstract
ICOS 2007
·
A. Belger, G. Gerig, J. Blocher, H. Gu, D. O.
Perkins, J. H. Gilmore Altered Brain Growth And Structure In Children And
Adolescents At Genetic Risk For Schizophrenia, accepted oral presentation/abstract
ICOS 2007 (Int. Conf. of Schizophrenia Research)
·
Gilmore John,
Vesta Yethiraja,
Lin Weili, Gerig
Guido, Neonatal DTI, 61th Annual Convention: Society of Biological Psychiatry,
May 2006
·
Gilmore John,
Looney Christopher, Vesta Yethiraja, Smith J. Keith, Lin Weili, Lieberman Jeffery, Gerig
Guido, Early Postnatal Brain Structure and Development in Humans: Sexual
Dimorphism and Cerebral Asymmetry are Present at Birth, American Congress
of Pharmacology ACNP, Dec. 2005
·
Gerig Guido, Gilmore
John H, Jomier Matthieu,
Joshi Sarang, Piven
Joseph, Computational anatomy to assess growth pattern of early brain development
in healthy and disease populations, American Congress of Pharmacology ACNP,
Dec. 2005
·
Hazlett, H.C., Poe,
M., Smith, R.G., Gerig, G., and Piven, J., UPDATE ON A LONGITUDINAL MRI STUDY OF
YOUNG CHILDREN WITH AUTISM, Int. Meeting for Autism Research IMFAR, 2005
·
Guido Gerig , Isabelle Corouge,
Clement Vachet, Ranga
Krishnan and James MacFall, Quantitative Analysis
of Diffusion Properties of White Matter Fiber Tracts: A Validation Study,
International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed
long abstract)
·
Guido Gerig, Weili Lin, Sampath Vetsa, John Gilmore,
Assessing White Matter Growth Trajectory of Early Neonatal Development
by 3T MR-DTI, , International Society of Magnetic Resonance ISMRM, May
2005 (peer reviewed long abstract)
·
G. Gerig and John H. Gilmore, Early Brain Development
Assessed by new Quantitative Analysis of structural MRI and DTI, Society
of Biological Psychiatry SOBP, Invited Symposium, May 2005
·
G. Gerig, S Joshi, H Gu,
D Perkins, RG Steen, R Hamer, JA Lieberman,
Automatic pipeline for quantitative brain tissue segmentation and parcellation: Experience with a large longitudinal
schizophrenia MRI study, Int. Cong. of Schizophrenia ICOS, March 2005
·
M. El-Sayed, L. Sikich, C. Charles,
G. Gerig, M. Styner,
S. Joshi, J. Lieberman, Morphometric MRI study in childhood and adolescent
psychoses, , 51st Annual Meeting of the AACAP (American Acedemy of Child & Adult Psychiatry), Washington,
2004.
·
G. Gerig and John Gilmore, Neonatal Brain Development
Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI,
American College of Neuropharmacology ACNP, Invited Symposium, Dec. 2004
·
ME Shenton, G Gerig, JS Kwon,
C Deutsch, M Kubicki, RW McCarley "Midline-Bacum
Septi Pellucidi
Abnormalities, Hippocampal Shape Abnormalities, and Diffusion Tensor Corpus
Callosum Asymmetry Abnormalities in Schizophrenia", Collegium Internationale Neuro-Psychopharmacologicum
XXIVth CINP, June 23 2004
·
Guido Gerig, Pierre Fillard,
Marcellinus Prastawa,
Weili Lin, John H. Gilmore, "Neonatal Brain
Development Assessed by new Quantitative Analysis of High-field 3Tesla
MRI and DTI", Society of Biological Psychiatry SOBP, April 29 - May 1,
2004
·
Mohamed Elsayed, Linmarie Sikich, Cecil Charles, Sarang
Joshi, Guido Gerig, Jeffrey A. Lieberman,
"Volumetric MRI Study in Childhood and Adolescent Psychosis" , Society
of Biological Psychiatry SOBP, April 29 - May 1, 2004
·
Guido Gerig, Pierre Fillard,
Marcel Prastawa, Weili
Lin and John Gilmore, "New quantitative analysis of high-field 3T MRI/DTI
to assess neonatal brain development", ACNP 2003, December 2003, Abstract
·
M Styner, G. Gerig, E Kistner, K Muller, JA Lieberman, "Age and treatment
related local hippocampal changes in schizophrenia explained by a novel
shape analysis method", Schizophrenia Research, Vol. 60, No. 1, Elsevier,
March 15, 2003, p. 208, Abstract
·
G Gerig, M Styner, DW Jones,
DR Weinberger, JA Lieberman, "Ventricular shape of monozygotic twins
discordant for schizophrenia reflects vulnerability", Schizophrenia Research,
Vol. 60, No. 1, Elsevier, March 15, 2003, p. 194, Abstract
·
JH Gilmore,
G Zhai, W Lin, K Wilber, G Gerig, "White Matter Development in Newborns Assessed
with Diffusion Tensor Imaging", Schizophrenia Research, Vol. 60, No. 1,
Elsevier, March 15, 2003, p. 195, Abstract
·
G Gerig, M Styner, M Chakos, JA Lieberman, Hippocampal Shape Alterations
in Schizophrenia: Results of a new Methodology, 11th Biennial Winter Workshop
on Schizophrenia, Feb. 26, 2002, Abstract.
·
M Styner, G Gerig, DW Jones,
DR Weinberger, JA Lieberman, Lateralized Differences in ventricular Shape
in monozygotic Twins discordant for Schizophrenia, 11th Biennial Winter
Workshop on Schizophrenia, Feb. 26, 2002, Abstract.
·
M. Styner, D.W. Jones, D Weinberger, JA Lieberman, G
Gerig, "Shape analysis of ventricular structures
in mono- and dizygotic twin study", Schizophrenia Research, Vol. 49, Nos.
1-2, Elsevier, April 28, 2001, p. 167, Abstract
·
J Park, G Gerig, M Chakos, *D Vandermeulen, JA Lieberman, "Neuroimaging of Psychiatry
Disease: Reliabl e and efficient automatic
brain tissue segmentation for increased sensitivity", Schizophrenia Research,
Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 163, Abstract
·
S. Schobel, Miranda Chakos,
Guido Gerig, Henry Bridges, Hongbin Gu, Cecil Charles,
Jeffrey Lieberman, "Duration and Severity of Illness and Hippocampal Volume
in Schizophrenia as Assessed by 3-D Manual Segmentation", Schizophrenia
Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 165, Abstract
·
H Bridges, M
Chakos, G Gerig,
S Schobel, C Charles, H Gu,
J Lieberman, "Association of Duration and Se verity of Illness and Superior
Temporal Gyrus Volume as Assessed by 3-D Manual
Segmentation Measurements in Male Schizophrenic Patients", Schizophrenia
Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 151, Abstract
·
G Gerig, M Jomier, M Chakos, JA Lieberman, "Segmentation of hippocampal
shape: Improved reliability by 2D and 3D visualization of segmented objects
and of intra-/inter-rater variability", Schizophrenia Research, Vol. 49,
Nos. 1-2, Elsevier, April 28, 2001, p. 154, Abstract
·
M Chakos, S Schobel, G Gerig, Cecil Charles, HB Gu,
D Bradford, J Lieberman, "Clinical correlates of Structural Brain Abnormalities
in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos.
1-2, Elsevier, April 28, 2001, p. 152, Abstract
·
J.H. Gilmore,
G. Gerig, B. Specter, C. Charles, J.S. Wilbur,
B.S. Hertzberg, M.A. Kliever, "Neonatal Cerebral
Ventricle volume: A comparison of 3D ultrasound and MRI", Schizophrenia
Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract
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