Publications Guido Gerig (Full Bios/CV)

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A full list of older publications (before 1998) for electronic transfer can be found in the homepage of my former institution "Image Science Lab, EE Department, Swiss Federal Institute of Technology ETH Zurich, Switzerland": BIWI . Please press the button "Publications" and select dates (optional) and author to get the abstract, bibliography and a gzipped PS-file for ftp transfer.


2014    Peer reviewed journal papers

  • Lewis, J. D., A. C. Evans, J. R. Pruett, K. Botteron, L. Zwaigenbaum, A. Estes, G. Gerig, L. Collins, P. Kostopoulos, R. McKinstry, S. Dager, S. Paterson, R. Schultz, M. Styner, H. Hazlett, J. Piven and the IBIS network. "Network inefficiencies in autism spectrum disorder at 24 months." Translational Psychiatry, In Press.
  • Ipek Oguz, Mahshid Farzinfar, Joy Matsui, Francois Budin, Zhexing Liu, Guido Gerig, Hans J Johnson, Martin Andreas Styner, DTIPrep: Quality Control of Diffusion-Weighted Images, Frontiers in Neuroinformatics, doi: 10.3389/fninf.2014.00004
  • J. Wang, C. Vachet, A. Rumple, S. Gouttard, C. Ouzie, E. Perrot, G. Du, X. Huang, G. Gerig, M.A. Styner. Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline, In Frontiers in Neuroinformatics, Vol. 8, No. 7, 2014.
  • Audrey Rose Verde, Francois Budin, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Mihye Ahn, Hans J Johnson, Joy Matsui, Heather C. Hazlett, Anuja Sharma, Casey Goodlett, Yundi Shi, Sylvain Gouttard, Clement Vachet, Joseph Piven, Hongtu Zhu, Guido Gerig, and Martin Andreas Styner. Unc-Utah Na-mic Framework for Dti Fiber Tract Analysis. Frontiers in Neuroinformatics, 2014. doi 10.3389/fninf.2013.00051.

2014    Peer reviewed full length conference papers

  • S. Elhabian, Y. Gur, C. Vachet, J. Piven, M. Styner, I. Leppert, G.B. Pike, G. Gerig. “A Preliminary Study on the Effect of Motion Correction On HARDI Reconstruction,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. 
  • J. Fishbaugh, M. Prastawa, G. Gerig, S. Durrleman. “Geodesic Regression of Image and Shape Data for Improved Modeling of 4D Trajectories,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. 
  • Y. Gao, M. Prastawa, M. Styner, J. Piven, G. Gerig. “A Joint Framework for 4D Segmentation and Estimation of Smooth Temporal Appearance Changes,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. 
  • A. Sharma, P.T. Fletcher, J.H. Gilmore, M.L. Escolar, A. Gupta, M. Styner, G. Gerig. “Parametric Regression Scheme for Distributions: Analysis of DTI Fiber Tract Diffusion Changes in Early Brain Development,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. 
  • Bo Wang, W. Liu, M. Prastawa, A. Irimia, P.M. Vespa, J.D. van Horn, P.T. Fletcher, G. Gerig. “4D Active Cut: An Interactive Tool for Pathological Anatomy Modeling,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. 
  • Avantika Vardhan, Marcel Prastawa, Clement Vachet, Joseph Piven, and Guido Gerig. Characterizing growth patterns in longitudinal mri using image contrast. In SPIE Medical Imaging . International Society for Optics and Photonics, 2014, in print.


2014    Reviewed abstracts

  • Shireen Elhabian, Yaniv Gurand Joseph Piven, Martin Styner, Ilana Leppert, G. Bruce Pike, and Guido Gerig. Subject-motion correction in HARDI acquisitions: Choices and consequences. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract.
  • Florian Rousset, Clement Vachet, Christopher Conlin, Marta Heilbrun, Jeff L. Zhang, Vivian S. Lee, and Guido Gerig. Semi-automated application for kidney motion correction and filtration analysis in MR renography. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract.
  • Neda Sadeghi, John H Gilmore, Weili Lin, and Guido Gerig. Normative modeling of early brain maturation from longitudinal DTI reveals twin-singleton di erences. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract.
  • Clement Vachet, Heather C. Hazlett, Joseph Piven, and Guido Gerig. 4D modeling of infant brain growth in Down's syndrome and controls from longitudinal MRI. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract.


2013    Peer reviewed journal papers

  • Carissa Cascio, Matthew J. Gribbin, Sylvain Gouttard, Rachel G. Smith, Matthieu Jomier, Samuel H. Field, Michael Graves, Heather C. Hazlett, Keith Muller, , Guido Gerig, and Joseph Piven,"FRACTIONAL ANISOTROPY DISTRIBUTIONS IN 2-6 YEAR-OLD CHILDREN WITH AUTISM", Journal of Intellectual Disability Research J Intellect Disabil Res, Sep 2013
  • Jeffrey S. Anderson , Jared A Nielsen, Michael A Ferguson, Melissa C Burback, Elizabeth  T Cox, Li Dai, Guido Gerig, Julie R Korenberg,  Abnormal Brain Synchrony in Down Syndrome, Neuroimage: Clinical, Volume 2, 2013, Pages 703–715,  doi
  • S. Durrleman, X. Pennec, A. Trouvé, J. Braga, G. Gerig, N. Ayache, Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data, Int. Journal Comp. Vision IJCV,   International Journal of Computer Vision 103(1): 22-59 (2013), (doi)
  • Farzinfar M, Oguz I, Smith RG, Verde AR, Dietrich C, Gupta A, Escolar ML, Piven J, Pujol S, Vachet C, Gouttard S, Gerig G, Dager S, McKinstry RC, Paterson S, Evans AC; The IBIS network, Styner MA, Diffusion imaging quality control via entropy of principal direction distribution. Neuroimage. 2013 May 17;82C:1-12. doi
  • Jed T. Elison, Sarah J. Paterson, Jason J. Wolff, J. Steven Reznick, Noah J. Sasson, Hongbin Gu, Kelly N. Botteron, Stephen R. Dager, Annette M. Estes, Alan C. Evans, Guido Gerig, Heather C. Hazlett, Robert T. Schultz, Martin Styner, Lonnie Zwaigenbaum, and Joseph Piven for the IBIS Network, White Matter Microstructure and Atypical Visual Orienting in 7 Month-Olds at Risk for Autism, Am J Psychiatry. 2013 Mar 20. doi: 10.1176/appi.ajp.2012.12091150. [Epub ahead of print]
  • Elison JT, Wolff JJ, Heimer DC, Paterson SJ, Gu H, Hazlett HC, Styner M, Gerig G, Piven J; IBIS Network, Frontolimbic neural circuitry at 6 months predicts individual differences in joint attention at 9 months, Dev Sci. 2013 Mar;16(2):186-97. doi: 10.1111/desc.12015. Epub 2012 Dec 20.
  • Neda Sadeghi, Marcel Prastawa; P. Thomas Fletcher; Jason Wolff; John Gilmore; Guido Gerig,  Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain,   2013 Mar;68:236-47,  doi: 10.1016/j.neuroimage.2012.11.040. Epub 2012 Dec 9  (access:)

  • Robert K. McClure, Martin Styner, Jeffrey A. Lieberman, Sylvain Gouttard, Guido Gerig, Xiaoyan Shi, and Hongtu Zhu, Localized differences in caudate and hippocampal shape associated with schizophrenia but not antipsychotic type, Psychiatry Res. 2013 Jan 30;211(1):1-10. doi:  10.1016/j.pscychresns.2012.07.001. Epub 2012 Nov 9, PMID: 23142194

  • Short SJ, Elison JT, Goldman BD, Styner M, Gu H, Connelly M, Maltbie E, Woolson S, Lin W, Gerig G, Reznick JS, Gilmore JH., Neuroimage. 2013 Jan 1;64:156-66. doi: 10.1016/j.neuroimage.2012.09.021. Epub 2012 Sep 16, PMID: 22989623

  • Kim SH, Fonov V, Dietrich C, Vachet C, Hazlett HC, Smith RG, Graves M, Piven J, Gilmore JH, Collins DL; The IBIS network, Gerig G, Styner M. Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain. J Neurosci Methods. 2013 Jan 15;212(1):43-55. doi: 10.1016/j.jneumeth.2012.09.018. Epub 2012 Sep 29, PMID: 23032117



2013    Peer reviewed full length conference papers

  • Bo Wang, Wei Liu, Marcel Prastawa, Andrei Irimia, Paul Vespa, John Van Horn, P. Thomas Fletcher, Guido Gerig , 4D Active Cut: An Interactive Tool for Pathological Anatomy Modeling, accepted IEEE ISBI'14, to appear April 2014
  • Yang Gao, Marcel Prastawa, Martin Styner, Joseph Piven, Guido Gerig, A JOINT FRAMEWORK FOR 4D SEGMENTATION AND ESTIMATION OF SMOOTH TEMPORAL APPEARANCE CHANGES, accepted IEEE ISBI'14, to appear April 2014
  • Shireen Elhabian*, Yaniv Gur, Joseph Piven, Martin Styner, Guido Gerig, A preliminary study on the effect of motion correction on HARDI reconstruction, accepted IEEE ISBI'14, to appear April 2014
  • Anuja Sharma*, P. Thomas Fletcher, John H. Gilmore, Maria L. Escolar, Aditya Gupta, Martin Styner, Guido Gerig, Parametric Regression Scheme for Distributions: Analysis of DTI Fiber Tract Diffusion Changes in Early Brain Development , accepted IEEE ISBI'14, to appear April 2014
  • James Fishbaugh*, Marcel Prastawa, Guido Gerig, Stanley Durrleman, Geodesic regression of image and shape data for improved modeling of 4D trajectories, accepted IEEE ISBI'14, to appear April 2014
  • Avantika Vardhan, Marcel Prastawa, Clement Vachet, Joseph Piven, and Guido Gerig. Characterizing growth patterns in longitudinal mri using image contrast. In print: SPIE Medical Imaging. International Society for Optics and Photonics, 2014.
  • Bo Wang, Marcel Prastawa, Avishek Saha, Suyash Awate, Andrei Irimia, Micah Chambers, Paul Vespa, John Van Horn, Valerio Pascucci, Guido Gerig, Modeling 4D changes in pathological anatomy using domain adaptation: analysis of TBI imaging using a tumor database, in Proc. MICCAI-MBIA 2013 workshop, Lecture Notes in Computer Science, Springer Verlag, in print.
  • Neda Sadeghi, Clement Vachet, Marcel Prastawa, Julie Korenberg, Guido Gerig, Analysis of Diffusion Tensor Imaging for Subjects with Down Syndrome, in Proc. 19th Annual Meeting of the Organization for Human Brain Mapping OHBM, June 2013, in print.
  • Avantika Vardhan, Joseph Piven, Marcel Prastawa, Guido Gerig, A longitudinal structural MRI study of change in regional contrast in Autism Spectrum Disorder, in Proc. 19th Annual Meeting of the Organization for Human Brain Mapping OHBM, June 2013, in print.
  • J. Fishbaugh, M. Prastawa, G. Gerig, S. Durrleman. “Geodesic image regression with a sparse parameterization of diffeomorphisms,” In Proceedings of the Geometric Science of Information Conference (GSI), pp. (to appear). 2013.  (PDF)
  • James Fishbaugh, Marcel Prastawa and Guido Gerig, Stanley Durrleman, "Geodesic shape regression in the framework of currents",  IPMI 2013: 718-729, LNCS Springer, June 2013 (PDF)
  • Neda Sadeghi, Marcel Prastawa, P. Thomas Fletcher, John H. Gilmore, Guido Gerig, MULTIVARIATE MODELING OF LONGITUDINAL MRI IN EARLY BRAIN DEVELOPMENT WITH CONFIDENCE MEASURES, Proc. IEEE ISBI, April 2013 (PDF)
  • Bo Wang, Marcel Prastawa, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. van Horn, Guido Gerig,  ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI, Proc. IEEE ISBI, April 2013 (PDF)
  • Avantika Vardhan, Marcel Prastawa, Joseph Piven for IBIS, Guido Gerig,  MODELING LONGITUDINAL MRI CHANGES IN POPULATIONS USING A LOCALIZED, INFORMATION-THEORETIC MEASURE OF CONTRAST, Proc. IEEE ISBI, April 2013 (PDF)
  • Anuja Sharma P., Thomas Fletcher, John H. Gilmore, Maria L. Escolar, Aditya Gupta, Martin Styner, Guido Gerig,  SPATIOTEMPORAL MODELING OF DISCRETE-TIME DISTRIBUTION-VALUED DATA APPLIED TO DTI TRACT EVOLUTION IN INFANT NEURODEVELOPMENT, to appear Proc. IEEE ISBI, April 2013 (PDF)
  • Mahshid Farzinfar, Yinpeng Li, Audrey Verde, Ipek Oguz, Guido Gerig, Martin A. Styner, DTI quality control assessment via error estimation from Monte Carlo simulation, Proc. SPIE, to March 13,. 2013. (access)  (PDF)
  • Beatriz Paniagua, Omri Emodi, Jonathan Hill,  James Fishbaugh, Luiz Pimenta, Stephen Aylward, Enquobahrie Andinet, Guido Gerig, John Gilmore, John van Aalst, Martin Styner, 3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants, Proc. SPIE, March 13. 2013 (access) (PDF)
  • Audrey R. Verde, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Vicki W. Chanon, Charlotte A. Boettiger, Casey Goodlett, Yundi Shi, Guido Gerig, Sylvain Gouttard, Clement Vachet, Hongtu Zhu, Martin A. Styner, The UNC-Utah NA-MIC DTI framework: atlas based fi ber tract analysis with application to a study of nicotine smoking addiction, Proc. SPIE, March 13, 2013 (access) (PDF) 



2013    Reviewed abstracts

  • Neda Sadeghi, Clement Vachet, Marcel Prastawa, Julie Korenberg, and Guido Gerig. Analysis of di usion tensor imaging for subjects with down syndrome. In Proc. OHBM. Organization of Human Brain Mapping OHBM, June 2013.
  • Avantika Vardhan, Joseph Piven, Marcel Prastawa, and Guido Gerig. A longitudinal structural MRI study of change in regional contrast in Autism Spectrum Disorder. In Proc. OHBM. Organization of Human Brain Mapping OHBM, June 2013.


2012    Peer reviewed journal papers


o    Dougherty MK, Gu H, Bizzell J, Ramsey S, Gerig G, Perkins DO, Belger A., Differences in subcortical structures in young adolescents at familial risk for schizophrenia: A preliminary study. Psychiatry Res. 2012 Nov 9. doi:pii: S0925-4927(12)00094-7. 10.1016/j.pscychresns.2012.04.016. [Epub ahead of print], PMID: 23146250

o    Andrei Irimia, Bo Wang, Stephen Aylward, Marcel Prastawa, Danielle Pace,  Marc Niethammer, Guido Gerig, David A. Hovda, Ron Kikinis, Paul M. Vespa, John D. Van Horn, Multimodal neuroimaging of structural pathology and neuroconnectivity in traumatic brain injury:  toward personalized outcome prediction, NeuroImage: Clinical, 1, 2012, pp. 1-17 (access)  (pdf)

o    X. Geng, S. Gouttard, A. Sharma, H. Gu, M. Styner, W. Lin, G. Gerig, and J. H. Gilmore, “Quantitative Tract-Based White Matter Development from Birth to Age Two Years”, Neuroimage. 2012 Jul 2;61(3):542-57, (http://dx.doi.org/10.1016/j.neuroimage.2012.03.057)

o    Amanda E. Lyall, Sandra Woolson, Honor M. Wolf, Barbara Davis Goldman, J. Steven Reznick, Robert M. Hamer, Weili Lin, Martin Styner, Guido Gerig and John H. Gilmore, Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2, Early Human Development, Elsevier, Early Hum Dev. 2012 Aug;88(8):691-8, (DOI http://dx.doi.org/10.1016/j.earlhumdev.2012.02.003)

o    Heather Cody Hazlett, Hongbin Gu, Robert C. McKinstry, Dennis W.W. Shaw, Kelly N. Botteron, Stephen Dager, Martin Styner, Clement Vachet, Guido Gerig, Sarah Paterson, Robert T. Schultz, Annette M. Estes, Alan C. Evans, and Joseph Piven, Brain Volume Findings in Six Month Old Infants at High Familial Risk for Autism, American Journal of Psychiatry (AJP), Am J Psychiatry. 2012 Jun 1;169(6):601-608. PMID: 22684595

o    Jason J. Wolff, Hongbin Gu, Guido Gerig, Jed T. Elison, et al., Differences in White Matter Fiber Tract Development Present from 6 to 24 Months in Infants with Autism,  Am J Psychiatry. 2012 Jun 1;169(6):589-600. doi: 10.1176/appi.ajp.2011.11091447. PMID: 22362397, http://ajp.psychiatryonline.org/Article.aspx?ArticleID=668180 , Original article pdf

      Press repoert CBS_Evening_News, Press report science daily, Press release autism speaks
      Press release RedOrbit, Press release DailyRX, Press release WFMY_News, Press release SowScience, Press release ScienceBlog

o    Andrei Irimia, Micah C. Chambers, Carinna M. Torgerson, Maria Filippou, David A. Hovda, Jeffry R. Alger, Guido Gerig, Arthur W. Toga, Paul M. Vespa, Ron Kikinis and John D. Van Horn, Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury, Front Neurol. 2012;3:10. Epub 2012 Feb 6. PMID: 22363313, Free PMC Article, doi: 10.3389/fneur.2012.0001 (http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract)


2012    Peer reviewed full length conference papers

o    Manasi Datar, Prasanna Muralidharan, Abhishek Kumar, Sylvain Gouttard, Joseph Piven for the IBIS Network, Guido Gerig, Ross Whitaker and P. Thomas Fletcher, "Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data", Lecture Notes in Computer Science LNCS 7570, Springer Verlag, Durrleman, Fletcher, Gerig, Niethammer, edts., pp. 76-87, 2012 (doi)

o    Durrleman, S. and Prastawa, M. and Joshi, S. and Gerig, G. and Trouve, A.,  Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters, Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30, PMID: 23286134 (doi)

o    Fishbaugh, J. and Prastawa, M. and Durrleman, S. and Gerig, G., Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling, Med Image Comput Comput Assist Interv. 2012;15(Pt 1):731-8, PMID: 23285617 (doi)

o    Aditya Gupta, Maria Escolar, Cheryl Dietrich,John Gilmore, Guido Gerig, Martin Styner, 3D Tensor Normalization for Improved Accuracy in DTI Registration Methods, Workshop on Biomedical Image Registration WBIR 2012, 170-179, (Springer link)

o    Bo Wang, Marcel Prastawa, Suyash P. Awate, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, Guido Gerig, 'Segmentation of Serial MRI of TBI patients using Personalized Atlas Construction and Topological Change Estimation',  In Proceedings of IEEE ISBI 2012, pp. 1152--1155. 2012 (doi)

o    Neda Sadeghi, Marcel Prastawa, P. Thomas Fletcher, John H. Gilmore, Weili Lin, Guido Gerig, 'STATISTICAL GROWTH MODELING OF LONGITUDINAL DT-MRI FOR REGIONAL CHARACTERIZATION OF EARLY BRAIN DEVELOPMENT', In Proceedings of IEEE ISBI 2012, pp. 1507--1510. 2012. (doi)

o    Anuja Sharma, Stanley Durrleman, John H. Gilmore, Guido Gerig, 'LONGITUDINAL GROWTH MODELING OF DISCRETE-TIME FUNCTIONS WITH APPLICATION TO DTI TRACT EVOLUTION IN EARLY NEURODEVELOPMENT',  In Proceedings of IEEE ISBI 2012, pp. 1397--1400. 2012.  (doi)

o    Avantika Vardhan, Marcel Prastawa, Sylvain Gouttard, Joseph Piven, Guido Gerig, 'Quantifying regional growth patterns through longitudinal analysis of distances between multimodal MR intensity distributions',   In Proceedings of IEEE ISBI 2012, pp. 1156--1159. 2012. (doi)

o    Prastawa, M., Awate, S, Joshi, S., Gerig, G., Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Atlas Estimation,   In Proceedings of the 2012 IEEE Mathematical Methods in Biomedical Image Analysis (MMBIA) Conference, pp. 49--56. 2012. (doi)

o    Sylvain Gouttard, Casey B. Goodlett, Marek Kubicki, Guido Gerig, Measures for Validation of DTI TractographyProc. SPIE 8314, 83140J (2012), http://link.aip.org/link/doi/10.1117/12.911546  

o    James Fishbaugh, Stanley Durrleman, Guido Gerig, A framework for longitudinal data analysis via shape regression, Proc. SPIE 8314, 83143K (2012), http://dx.doi.org/10.1117/12.911721

o    Bo Wang, Marcel Prastawa, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, and Guido Gerig, A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury, Proc. SPIE 8314, 831402 (2012); http://dx.doi.org/10.1117/12.911043

o   Clement Vachet, Benjamin Yvernault, Kshamta Bhatt, Rachel G. Smith, Guido Gerig, Heather Cody Hazlett, Martin A. Styner, Automatic corpus callosum segmentation using a deformable active Fourier contour model, Proc. SPIE 8317, 831707, March 23, 2012 (doi)


2011    Peer reviewed journal papers

o   Linh Ha, Marcel Prastawa, Guido Gerig, John Gilmore, Claudio Silva and Sarang Joshi, "Efficient Probabilistic and Geometric Anatomical Mapping using Particle Mesh Approximation on GPUs",  Int J Biomed Imaging. 2011;2011:572187. Epub 2011 Aug 17. PMID 2194152 [PubMed], doi:10.1155/2011/572187

o    Guido Gerig, Ipek Oguz, Sylvain Gouttard, Joohwi Lee, Hongyu An, Weili Lin, Matthew McMurray, Karen Grewen, Josephine Johns, Martin Andreas Styner, Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse, Front Psychiatry. 2011;2:53. Epub 2011 Oct 3., (http://www.frontiersin.org/child_and_neurodevelopmental_psychiatry_/10.3389/fpsyt.2011.00053/abstract )

o    Irimia A, Chambers MC, Alger JR, Filippou M, Prastawa MW, Wang B, Hovda D, Gerig G, Toga AW, Kikinis R, Vespa PM, Van Horn JD, Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes, , J Neurotrauma. Nov. 2011, PMID: 21787171

o    Zhu H, Kong L, Li R, Styner M, Gerig G, Lin W, Gilmore JH, FADTTS: functional analysis of diffusion tensor tract statistics, Neuroimage. 2011 Jun 1;56(3):1412-25. Epub 2011 Feb 16, PMID: 21335092

o    Wang Y, Gupta A, Liu Z, Zhang H, Escolar ML, Gilmore JH, Gouttard S, Fillard P, Maltbie E, Gerig G, Styner M, DTI registration in atlas based fiber analysis of infantile Krabbe disease, Neuroimage. 2011 Apr 15;55(4):1577-86. Epub 2011 Jan 19. PMID: 21256236

o    Knickmeyer RC, Kang C, Woolson S, Smith JK, Hamer RM, Lin W, Gerig G, Styner M, Gilmore JH, Twin-singleton differences in neonatal brain structure, Twin Res Hum Genet. 2011 Jun;14(3):268-76, PMID: 21623657

o   Hazlett HC, Poe MD, Gerig G, Styner M, Chappell C, Smith RG, Vachet C, Piven J, Early brain overgrowth in autism associated with an increase in cortical surface area before age 2 years, Arch Gen Psychiatry. 2011 May;68(5):467-76. PMID: 21536976

Press release Wall Street Journal

Press release Los Angeles Times

Press release WebMD

o   Shi F, Shen D, Yap PT, Fan Y, Cheng JZ, An H, Wald LL, Gerig G, Gilmore JH, Lin W, CENTS: cortical enhanced neonatal tissue segmentation, Hum Brain Mapp. 2011 Mar;32(3):382-96. doi: 10.1002/hbm.21023. PMID: 20690143

 


2011    Peer reviewed full length conference papers

o    S.H. Kim, V. Fonov, J. Piven, J. Gilmore, C. Vachet, G. Gerig, D.L. Collins, M. Styner. “Spatial Intensity Prior Correction for Tissue Segmentation in the Developing human Brain,” In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on , vol., no., pp.2049-2052, March 30 2011-April 2 2011, doi: 10.1109/ISBI.2011.5872815, URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5872815&isnumber=5872340

o    Fishbaugh, J., Durrleman, S.., Gerig, G., Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data, Med Image Comput Comput Assist Interv. 2011;14(Pt 2):401-8., PMID 21995054 (doi)

o    Durrleman S, Prastawa M, Gerig G, Joshi S., Optimal data-driven sparse parameterization of diffeomorphisms for population analysis, Inf Process Med Imaging. 2011;22:123-34, PMID: 21761651 (doi)

 


2010    Peer reviewed journal papers

o   John H Gilmore, Chaeryon Kang, Dianne D. Evans, Honor M. Wolfe, J. Keith Smith, Jeffrey A. Lieberman, Weili Lin, Robert M. Hamer, Martin Styner, Guido Gerig, Prenatal and Neonatal Brain Structure and White Matter Maturation in Children at High Risk for Schizophrenia, Am J Psychiatry. 2010 Sep;167(9):1083-91. Epub 2010 Jun 1.PMID: 20516153

o   Gilmore JH, Schmitt JE, Knickmeyer RC, Smith JK, Lin W, Styner M, Gerig G, Neale MC., Genetic and environmental contributions to neonatal brain structure: A twin study, Hum Brain Mapp. 2010 Aug;31(8):1174-82.PMID: 20063301

o   Mohamed El-Sayed, R. Grant Steen, Michele D. Poe, T. Carter Bethea, Guido Gerig, Jeffrey Lieberman, and Linmarie Sikich, Deficits in gray matter volume in psychotic youth with schizophrenia-spectrum disorders are not evident in psychotic youth with mood disorders, J Psychiatry Neurosci. 2010 Jul;35(4):229-36.PMID: 20569649

o    Kevin Gorczowski, Martin Styner, Ja Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig, "Multi-object Analysis of Volume, Pose, and Shape using Statistical Discrimination," Gorczowski K, Styner M, Jeong JY, Marron JS, Piven J, Hazlett HC, Pizer SM, Gerig G., IEEE Trans Pattern Anal Mach Intell. 2010 Apr;32(4):652-61.PMID: 20224121 <http://doi.ieeecomputersociety.org/10.1109/TPAMI.2009.92>


2010       Peer reviewed full length conference papers

o    N. Sadeghi, M. Prastawa, J. H. Gilmore, W. Lin, and G. Gerig, "Spatio-Temporal Analysis of Early Brain Development," in Proceedings IEEE Asilomar Conference on Signals, Systems & Computers, Nov. 2010, IEEE catalog No.: CFP10431-CDR, ISBN: 978-1-4244-9720-1, Nov. 2010, DOI: 10.1117/12.844526

o    Prastawa, M., Sadeghi, N., Gilmore, J., Lin, W., Gerig, G., A new framework for analyzing white matter maturation in early brain development, In Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 97--100. April, 2010

o    Linh Ha, Marcel Prastawa, Guido Gerig, John H. Gilmore, Claudio Silva, Sarang Joshi, Image Registration Driven by Combined  Probabilistic and Geometric Descriptors, Med Image Comput Comput Assist Interv. 2010;13(Pt 2):602-9.PMID: 20879365

o    Cassian Marc, Clement Vachet, Joseph E. Blocher, Guido Gerig, John H. Gilmore, Martin A. Styner, Changes of MR and DTI appearance in early human brain development, Proc. SPIE 7623, 762324 (2010); http://dx.doi.org/10.1117/12.844912

o    Zhexing Liu, Casey Goodlett, Guido Gerig, Martin Styner, Evaluation of DTI Property Maps as Basis of DTI Atlas Building,  Proc. SPIE 7623, 762325 (2010); http://dx.doi.org/10.1117/12.844911

o    Zhexing Liu, Yi Wang, Guido Gerig, Sylvain Gouttard, Ran Tao, Thomas Fletcher, Martin A. Styner, Quality control of diffusion weighted images, SPIE Medical Imaging, February 2010

o    Neda Sadeghi, Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig, Towards Analysis of Growth Trajectory through Multi-modal Longitudinal MR Imaging, SPIE Medical Imaging, In SPIE Medical Imaging 2010: Image Processing, Vol. 7623, 76232U, Edited by Benoit M. Dawant and David R. Haynor, Proc. SPIE 7623, 76232U (2010); http://dx.doi.org/10.1117/12.844526


2009    Peer reviewed journal papers

o    Heather Cody Hazlett, Michele D. Poe, Amy A. Lightbody, Guido Gerig, James R. MacFall, Allison K. Ross, James Provenzale, Arianna Martin, Allan L. Reiss and Joseph Piven, Teasing apart the heterogeneity of autism: Same behavior, different brains in toddlers with fragile X syndrome and autism, Journal of Neurodevelopmental Disorders, Springer Verlag, Volume 1, Issue 1 (2009), Page 81

o    Prastawa M, Bullitt E, Gerig G, Simulation of brain tumors in MR images, Medical Image Analysis 13 (2009), pp. 297-311, PMID: 19119055

o    Matthew W. Mosconi, Heather Cody Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel Smith, and Joseph Piven, A longitudinal study of amygdala volume and joint attention in 2-4 year old children with autism, Arch Gen Psychiatry. 2009 May;66(5):509-16. PMID: 19414710

o    Casey B. Goodlett, P. Thomas Fletcher, John H. Gilmore, and Guido Gerig, Group Analysis of DTI Fiber Tract Statistics with Application to Neurodevelopment, NeuroImage 45 (1) Supp. 1, 2009.p. S133-S142, PMID: 19059345

o    W. Gao, W. Lin, Y. Chen, G. Gerig, J.K. Smith, V. Jewells and J.H. Gilmore, Temporal and Spatial Development of Axonal Maturation and Myelination of White Matter in the Developing Brain, American Journal of Neuroradiology (AJNR) 30:290-296, February 2009

o    Niyati Mukherjee, Chaeryon Kang, Honor M. Wolfe, Barbara S. Hertzberg,  J. Keith Smith, Weili Lin, Guido Gerig, Robert M. Hamer, John H. Gilmore,  Discordance of Prenatal and Neonatal Brain Development in Twins, Early Hum Dev. 2009 Mar;85(3):171-5, PMID: 18804925

o    Fan Zhang, Edwin R. Hancock, Casey Goodlett and Guido Gerig, Probabilistic White Matter Fiber Tracking using, Particle Filtering and von Mises-Fisher Sampling, Med Image Anal. 2009 Feb;13(1):5-18, PMID: 18602332


2009        Peer reviewed full length conference papers

o    Sylvain Gouttard, Marcel Prastawa, Elizabeth Bullitt, Casey Goodlett and Guido Gerig, Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall 32%).

o    Manasi Datar, Joshua Cates, P. Thomas Fletcher, Sylvain Gouttard, Guido Gerig and Ross Whitaker, Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging, to appear Proc. MICCAI 2009, Springer Verlag (32% acceptance rate)

o    Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets, Stanley Durrleman, Xavier Pennec, A. Trouve, Guido Gerig, Nicholas Ayache, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall 32%).

o    Dingang Shen, Guido Gerig, Weili Lin, Cortical Enhanced Tissue Segmentation of Neonatal Brain MR Images Acquired by Dedicated Phased Array Coil, IEEE CVPR-MMBIA workshop June 2009

o    Zhexing Liu, Hongtu Zhu, Bonita L. Marks, Laurence M. Katz, Casey B. Goodlett, Guido Gerig, Martin Styner, Voxel-wise group analysis of DTI, to appear IEEE proceedings ISBI 2009 (selected as oral, 10% acceptance rate, overall 50%)


2008 Peer reviewed journal papers

o    John H. Gilmore, MD; Lauren Smith, BA, Honor Wolfe, MD; Barbara Hertzberg, MD; J. Keith Smith, MD; Nancy Chescheir; Dianne Evans, Chaeryon Kang; Robert M. Hamer, Weili Lin, Guido Gerig, Prenatal Mild Ventriculomegaly Predicts Abnormal Development of the Neonatal Brain, Biol Psychiatry, 2008 Dec 15;64(12):1069-76, PMID: 18835482.

o    Rebecca C. Knickmeyer, Sylvain Gouttard, Chaeryon Kang, Dianne Evans, Kathy Wilber, Keith J. Smith, Robert M. Hamer, Weili Lin, Guido Gerig, John H. Gilmore, A Structural MRI Study of Human Brain Development from Birth to Two Years, J Neurosci. 2008 Nov 19;28(47):12176-82, PMID: 19020011.

o    Kubicki M, Styner M, Bouix S, Gerig G, Markant D, Smith K, Kikinis R, McCarley RW, Shenton ME. Reduced Interhemispheric Connectivity in Schizophrenia- Tractography Based Segmentation of the Corpus Callosum. /Schizophr Res/ Dec 2008;106(2-3):125-131.

o    W. Lin, Q. Zhu, W. Gao, Y. Chen, C.-H. Toh, M. Styner, G. Gerig, J.K. Smith, B. Biswal and J.H. Gilmore, Functional Connectivity MR Imaging Reveals Cortical Functional Connectivity in the Developing Brain, American Journal of Neuroradiology (AJNR) 29:1883-1889, November-December 2008

o    Belmonte MK, Mazziotta JC, Minshew NJ, Evans AC, Courchesne E, Dager SR, Bookheimer SY, Aylward EH, Amaral DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE, Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to Put Heads Together in Autism Neuroimaging. J Autism Dev Disord. 2008 Jan;38(1):2-13, PMID: 17347882


2008 Peer reviewed full length conference papers

o    A.Fedorov, E.Billet, M.Prastawa, G.Gerig, A.Radmanesh, S.K.Warfield, R.Kikinis, and N.Chrisochoides, Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures, accepted as oral presentation at ISVC08 (4th Int. Symp. On Visual Computing), to appear Springer LNCS Fall 2008

o    Marcel Prastawa and Guido Gerig, Brain Lesion Segmentation through Physical Model Estimation, accepted as oral presentation at ISVC08 (4th Int. Symp. On Visual Computing), to appear Springer LNCS Fall 2008

o    Casey Goodlett, P. Thomas Fletcher, John Gilmore, and Guido Gerig, Group Statistics of DTI Fiber Bundles Using Spatial Functions of Tensor Measures, Proc. MICCAI’08, Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. 5241, Sept. 2008, pp. 1068 -- 1073, nominated best paper award

o    Sylvain Gouttard, Martin Styner, Marcel Prastawa, Joseph Piven, and Guido Gerig, Assessment of Reliability of Multi-site Neuroimaging via Traveling Phantom Study, Proc. MICCAI’08, Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. 5242, Sept. 2008, pp. 263 -- 270

o    Shun Xu, Martin Styner, and Guido Gerig, “Multivariate Nonlinear Mixed Model to Analyze Longitudinal Image Data: MRI Study of Early Brain Development”, Proc. of IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) 2008, June 2008

o    Styner, M., Oguz, I., Heimann, T., Gerig, G., Minimum description length with local geometry, Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on 14-17 May 2008 Page(s): 1283 - 1286 Digital Object Identifier 10.1109/ISBI.2008.4541238

o    Xu, Shun C. A. Styner, Martin, Gilmore, John H. Gerig, Guido, Multivariate longitudinal statistics for neonatal-pediatric brain tissue development,  Proc. SPIE 6914, 69140C (2008); http://dx.doi.org/10.1117/12.773966

 


2007 Peer reviewed journal papers

o    J. H. Gilmore, W. Lin, I. Corouge, Y. S. K. Vetsa, J. K.Smith, Ch. Kang, H. Gu, R.M. Hamer, J. A. Lieberman, G. Gerig, Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography,  AJNR Am J Neuroradiol. 2007 Oct;28(9):1789-95

o    Huang X, Lee YZ, McKeown M, Gerig G, Gu H, Lin W, Lewis MM, Ford S, Troster AI, Weinberger DR, Styner , Asymmetrical ventricular enlargement in Parkinson's disease. Mov Disord 2007 Aug 15;22(11):1657-60

o    Belmonte MK, Mazziotta JC, Minshew NJ, Evans AC, Courchesne E, Dager SR, Bookheimer SY, Aylward EH, Amaral DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE, Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to Put Heads Together in Autism Neuroimaging. J Autism Dev Disord 2007 Mar 9;():

o    Taylor WD, MacFall JR, Gerig G, Krishnan KR. Structural integrity of the uncinate fasciculus in geriatric depression: Relationship with age of onset. Neuropsychiatric Disease and Treatment 2007; 3(5):669-674

o    Carissa J. Cascio, Guido Gerig and Joseph Piven, Diffusion Tensor Imaging: Application to the Study of the Developing Brain, J Am Acad Child Adolesc Psychiatry. 2007 Feb;46(2):213-23

o    Gilmore JH, Lin W, Prastawa MW, Looney CB, Vetsa YSK, Knickmeyer RC, Evans DD, Smith JK, Hamer RM, Lieberman JA, Gerig G. Regional gray matter growth, sexual dimorphism, and cerebral asymmetry in the neonatal brain. Journal of Neuroscience 2007;27(6):1255-1260. Acrobat Reader format [1106kb]
Original Artible Journal of Neuroscience
Special Feature J Neuroscience
Medical News Today
UNC News Feb 7, 2007
UNC School of Public Health

 


2007 Peer reviewed full length conference papers

o    Goodlett, Casey , Fletcher, P. Thomas , Lin, Weili , and Gerig, Guido, "Quantification of measurement error in DTI: Theoretical predictions and validation", Proc. MICCAI’07, Springer LNCS 4792, Nov. 2007, pp. 10-17

o    Fan Fan Zhang, Casey Goodlett, Edwin Hancock, Guido Gerig, "Probabilistic White Matter Fiber Tracking using Particle Filtering", accepted CVPR workshop EMMCVPR 2007

o    Fan Zhang et al., Probabilistic White Matter Fiber Tracking using Particle Filtering, Proc. MICCAI 2007, Springer LNCS 4791, Nov. 2007, pp. 144-151

o    Terriberry, Timothy B., Damon, James N., Pizer, Stephen M., Joshi, Sarang C. and Gerig, Guido, "Population-based Fitting of Medial Shape Models with Correspondence Optimization", in Proceedings IPMI'07, Information Processing in Med Imaging, Springer LNCS, 2007;20():700-12

o    Kevin Gorczowski, Martin Styner, Ja Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig, Statistical Shape Analysis of Multi-Object Complexes, Proc. CVPR’07, IEEE Press

o    C. B. Goodlett, P. T. Fletcher, W. Lin, and G. Gerig, Noise-induced bias in low-direction diffusion tensor MRI: Replication of Monte-Carlo simulation with in-vivo scans, short paper Proc. ISMRM 2007

o    D Nain, M Styner, M Niethammer, J J Levitt, M E Shenton, G Gerig, A Bobick, A Tannenbaum, Statistical shape analysis of brain structures using spherical wavelets, Proc. ISBI 2007, IEEE press

o    Martin Styner, Shun Xu, Mohammed El-Sayed, Guido Gerig, Correspondence Evaluation in local shape analysis and structural subdivision, Proc. ISBI 2007, IEEE press

o    Kevin Gorczowski, Martin Stynera, Ja Yeon Jeonga, J. S. Marron, Joseph Piven, Heather Cody, Hazlett, Stephen M. Pizer, Guido Gerig, Discrimination Analysis using Multi-object Statistics of Shape and Pose, Proc. SPIE 6512, 65121A (2007); http://dx.doi.org/10.1117/12.710218

o    Sylvain Gouttard, Martin Styner, Sarang Joshi, Rachel G. Smith, Heather Cody, Guido Gerig, Subcortical structure segmentation using probabilistic atlas prior, Proc. SPIE 6512, 65122J (2007); http://dx.doi.org/10.1117/12.708626

o    M. Styner, I. Oguz, S. Xu, D. Pantazis, and G. Gerig. Statistical group differences in anatomical shape analysis using hotelling T2 metric. Proc. SPIE 6512, 65123Z (2007); http://dx.doi.org/10.1117/12.708467


2006 Peer reviewed journal papers

o    John H. Gilmore, Weili Lin, and Guido Gerig, IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain Development, Am J Psychiatry, Dec 2006; 163: 2046. Acrobat Reader format [132kb]

o    Carissa J. Cascio, Martin Styner, Rachel G. Smith, Michele D. Poe, Guido Gerig, Heather C. Hazlett, Matthieu Jomier, Roland Bammer, and Joseph Piven, Tractography-based segmentation of the corpus callosum reveals a reduced relationship to cortical white matter volume in young children with developmental delay, Am J Psychiatry, Dec 2006; 163: 2157 - 2163 Acrobat Reader format [199Kb]

o    Carissa J. Cascio, Guido Gerig and Joseph Piven, Diffusion Tensor Imaging: Application to the Study of the Developing Brain, in print Journal of the American Academy of Child and Adolescent Psychiatry JAACAP, August 2006 Acrobat Reader format [970kb]

o    Isabelle Corouge, P.Thomas Fletcher, Sarang Joshi, Sylvain Gouttard, Guido Gerig, Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Medical Image Analysis 10 (2006), 786 - 798 Acrobat Reader format [914kb]
PubMed Entry

o    Yushkevich, PA, Piven, J., Cody Hazlett, H., Gimpel Smith, R., Ho, S, Gee, J.J.Gerig, G.; User-Guided 3D Active Contour Segmentation of Anatomical Structures: Significantly Improved Efficiency and Reliability, NeuroImage 31 (2006) 1116 - 1128 Acrobat Reader format [983Kb]
PubMed Entry

Link to Elsevier Direct

o    Heather Cody Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel Smith and Joseph Piven, Cortical Gray and White Brain Tissue Volume in Adolescents and Adults with Autism, Biological Psychiatry, Volume 59, Issue 1, Pages 1-96 (1 January 2006) Acrobat Reader format [1.5Mb]
PubMed Entry

o    Peter Lorenzen, Marcel Prastawa, Brad Davis, Guido Gerig, Elizabeth Bullitt, and Sarang Joshi, Multi-Modal Image Set Registration and Atlas Formation, Medical Image Analysis MEDIA, Elsevier, Vol 10 issue 3, pp 440-451, May 2006 Acrobat Reader format [600Kb]
PubMed Entry

2006 Peer reviewed full length conference papers

o    Oguz, Ipek, Gerig, Guido, Barre, Sebastien, Styner, Martin, A Quantitative KWMeshVisu: A Mesh Visualization Tool for Shape Analysis, 2006, ISC/NA-MIC Workshop on Open Science at MICCAI 2006, Online publication: http://hdl.handle.net/1926/220

o    Styner, M. and Oguz, I. and Xu, S. and Brechbuhler, C. and Pantazis, D. and Levitt, J. and Shenton, M. and Gerig, G.:Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM, Open Science Workshop at MICCAI 2006, Kopenhagen, published at Insight Journal DSpace link: http://hdl.handle.net/1926/215

o    Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, Multi-Object Statistics using Principal Geodesic Analysis in a Longitudinal Pediatric Study, Lecture Notes in Computer Science LNCS No. 4091, G-Z Yang, T. Jiang, D. Shen, L. Gu and J. Yang, editors, Springer Verlag, Proc. MIAR conference, pp. 1 - 8, August 2006 Acrobat Reader format [807Kb]

o    Timothy B. Terriberry and Guido Gerig, A Continuous 3-D Medial Shape Model With Branching, International Workshop on Mathematical Foundations of Computational Anatomy MFCA-2006, in conjunction with MICCAI 2006 MFCA-2006
Acrobat Reader format [807Kb]

o    Improved Correspondence for DTI Population Studies via Unbiased Atlas Building Casey Goodlett, Brad Davis, Remi Jean, John Gilmore, and Guido Gerig, Lecture Notes in Computer Science LNCS, Medical Image Computing and Computer-Assisted Intervention, Springer Verlag, Vol. 4191, Oct. 2006, pp. 260 - 267 Acrobat Reader format [1.17Mb]

o    Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth, G. Gerig, B. Davis, P. Lorenzen, Sh. Xu, M. Jomier, J. Piven and S. Joshi, to appear Proc. 3DPVT, June 2006 Acrobat Reader format [1.78Mb]

o    Shun Xu, Martin Styner, Brad Davis, Sarang Joshi, Guido Gerig, Group Mean Differences of Voxel and Surface Objects via Nonlinear Averaging, in IEEE International Symposium on Biomedical Imaging (ISBI), pp. 758-761, Apr. 2006 Acrobat Reader format [416Kb]

o    Guido Gerig, Sarang Joshi, Tom Fletcher, Kevin Gorczowski, Shun Xu, Stephen M. Pizer, Martin Styner, "Statistics of populations of images and its embedded objects: Driving applications in neuroimaging", in IEEE International Symposium on Biomedical Imaging (ISBI), special session Shape in Imaging, pp. 1120-1123, Apr. 2006 Acrobat Reader format [1.19Mb]

o    Martin Styner, Matthieu Jomier, and Guido Gerig, Closed and open source neuroimage analysis tools and libraries at UNC, in IEEE International Symposium on Biomedical Imaging (ISBI), special session Open Source, pp. 702-705, Apr. 2006. Acrobat Reader format [188Kb]


2005 Peer reviewed journal papers

o    Matthew J. Hoptman, Jan Volavka, Elisabeth M. Weiss, Pál Czobor, Philip R. Szeszko, Guido Gerig, Miranda Chakos, Joseph Blocher, Leslie L. Citrome , Jean-Pierre Lindenmayer, Brian Sheitman, Jeffrey A. Lieberman and Robert M. Bilder, Quantitative MRI Measures of Orbitofrontal Cortex in Patients with Chronic Schizophrenia or Schizoaffective Disorder in print Psychiatry Research, Neuroimaging

o    Amy Pinkham, David Penn, Bethany Wangelin, Diana Perkins, Guido Gerig, Hongbin Gu, and Jeffrey Lieberman, Facial Emotion Perception and Fusiform Gyrus Volume in First Episode Schizophrenia, Schizophrenia Research, in print

o    Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig, Automatic Segmentation of MR Images of the Developing Newborn Brain, Medical Image Analysis (MedIA). Vol 9, October 2005, pages 457-466 Acrobat Reader format [800Kb]
Link to Elsevier Direct

o    Hazlett, Heather Cody, Poe, Michele, Gerig, Guido, Smith, Rachel, Provenzale, Jim, Ross, Allison, Gilmore, John H. and Piven, Joseph, Magnetic Resonance Imaging and Head Circumference Study of Brain Size in Autism, Birth Through Age 2 Years, Arch Gen Psychiatry. 2005;62:1366-1376 Acrobat Reader format [800Kb]

o    Elizabeth Bullitt, Donglin Zeng, Guido Gerig, Stephen Aylward, Sarang Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend, Vessel Tortuosity and Brain Tumor Malignancy: A Blinded Study, Academic Radiology, 12:1232-1240, 2005 Abstract/Full Text

o    Martin Styner, Jeffrey A. Lieberman, Robert McClure, Daniel Weinberger, Douglas Jones, Guido Gerig, Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors (in print Proc. National Academy of Science PNAS, Feb. 2005) Acrobat Reader format [611Kb] // PNAS Abstract News reports about this paper: Lichtblicke (German) Bild der Wissenschaft (German)


2005 Peer reviewed full length conference papers

o    Yushkevich Paul A., Piven Joseph, Cody Heather, Ho Sean, Gee James C., Gerig Guido, User-Guided Level Set Segmentation of Anatomical Structures with ITK-SNAP, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download

o    C. Goodlett, I. Corouge, M. Jomier, and G. Gerig, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download

o    Corouge, I., Fletcher, T., Joshi, S., Gilmore J.H., and Gerig, G., Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 131 -- 138 Acrobat Reader format

o    Prastawa, M., Bullitt, E. and Gerig, G., Synthetic Ground Truth for Validation of Brain Tumor MRI Segmentation, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 26 -- 33 Acrobat Reader format

o    Mortamet, B., Donglin, Z., Gerig, G., Prastawa, M. and Bullitt, E., Effects of healthy aging measured by intracranial compartment volumes using designed MR brain database, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 383 -- 391 Acrobat Reader format

o    Terriberry, T., Joshi S., and Gerig, G., Hypothesis Testing with Nonlinear Shape Models, Lecture Notes in Computer Science LNCS, Gary E. Christensen and Milan Sonka, editors, Springer Verlag, Vol. 3565, July. 2005, pp. 15 -- 26 Acrobat Reader format


2004 Peer reviewed journal papers

o    Elizabeth Bullitt, Matthew G. Ewend, Stephen Aylward, Weili Lin, Guido Gerig, Sarang Joshi, Inkyung Jung, Keith Muller, Keith Smith, Abnormal vessel tortuosity as a marker of treatment response of malignant gliomas: Preliminary report Technology in Cancer Research and Treatment TCRT, Volume 3 No. 6 (p 525-670) Dec 2004

o    MH Chakos, SA Schobel, H Gu, G Gerig, D Bradford, C Charles, and J Lieberman, "Duration of illness and treatment effects on hippocampal volume in male patients with schizophrenia," British Journal of Psychiatry, vol. 186, no. , pp. 26-31, 2005. Acrobat Reader format [168Kb]

o    Sarang Joshi, Brad Davis, Matthieu Jomier, and Guido Gerig, "Unbiased Diffeomorphic Atlas Construction for Computational Anatomy," NeuroImage; Supplement issue on Mathematics in Brain Imaging, (PM Thompson, MI Miller, T Ratnanather, RA Poldrack, and TE Nichols, eds.), vol. 23, no. Supplement1, pp. S151-S160, Elsevier, Inc, 2004. Acrobat Reader format [800Kb]

o    John H. Gilmore, Guihua Zhai, Kathy Wilber, J. Keith Smith, Weili Lin, and Guido Gerig, "3 Tesla magnetic resonance imaging of the brain in newborns," Psychiatric Research Neuroimaging, vol. 132, no. , pp. 81-85, Elsevier, 2004. Acrobat Reader format [190Kb]

o    Martin Styner, Jeffrey A. Lieberman, Dimitrios Pantazis and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 197-203 Acrobat Reader format [840Kb]

o    Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "A Brain Tumor Segmentation Framework Based On Outlier Detection", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 275-283 Acrobat Reader format [840Kb]

o    Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Comparison of relative mandibular growth vectors with high-resolution 3-dimensional imaging.Am J Orthod Dentofacial Orthop, 128:27-34.

o    Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Assessment of mandibular growth and response to orthopedic therapy with 3-dimensional magnetic resonance images. Am J Orthod Dentofacial Orthop, 128:16-26.


2004 Peer reviewed full length conference papers

o    Guido Gerig, Sylvain Gouttard, and Isabelle Corouge, "Analysis of Brain White Matter via Fiber Tract Modeling", IEEE Engineering in Medicine and Biology EMB 2004: Abstract p. 426, full paper IEEE Catalog No: 04CH37558C, ISBN: 0-7803-8440-7 Acrobat Reader format [4.2Mb]

o    Isabelle Corouge, Sylvain Gouttard, and Guido Gerig, "A Statistical Shape Model of Individual Fiber Tracts Extracted from Diffusion Tensor MRI", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 671-679, 2004 Acrobat Reader format [2.7Mb]

o    Marcel Prastawa, John Gilmore, Weili Lin, and Guido Gerig, "Automatic Segmentation of Neonatal Brain MRI", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 10-17, 2004 Acrobat Reader format [300Kb]

o    Sean Ho, Guido Gerig, "Profile Scale-spaces for Multiscale Image Match", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 176-183, 2004 Acrobat Reader format [310Kb]

o    Peter Lorenzen, Brad Davis, Guido Gerig, Elizabeth Bullitt and Sarang Joshi, "Multi-class Posterior Atlas Formation via Unbiased Kullback-Leibler Template Estimation", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 95-102, 2004 Acrobat Reader format [270Kb]

o    Elizabeth Bullitt, Inkyung Jung, Keith Muller, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, "Determining Malignancy of Brain Tumors By Analysis of Vessel Shape", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 645-653, 2004 Acrobat Reader format [320Kb]

o    Corouge, Isabelle, Gouttard, Sylvain and Gerig, Guido, "Towards a Shape Model of White Matter Fiber Bundles using Diffusion Tensor MRI" , International Symposium on Biomedical Imaging (ISBI'04), (Piscataway, NJ), pp. 344-347, April 2004 Acrobat Reader format [0.75Mb]

o    Martin Styner and Guido Gerig, "Shape Analysis of Anatomical Structures corrected for Multiple Correlated Statistical Tests", Proc. of SPIE, Medical Imaging 2004: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Vol. #5370, pp. 233-240, Proc. SPIE 5370, 233 (2004); http://dx.doi.org/10.1117/12.533026, Feb. 2004 Acrobat Reader format [400Kb] Abstract w. full reference


2003 Peer reviewed journal papers

o    Prastawa, Marcel, and Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Academic Radiology, Vol. 10 pp. 1341-1348 Dec. 2003 Acrobat Reader format [320Kb]

o    Bullitt, Elizabeth, and Gerig, Guido, and Pizer, Stephen M., and Lin, Weili and Aylward, Stephen R. Automatic Measuring Tortuosity of the Intracerebral Vasculature from MRA Images, IEEE Transactions on Medical Imaging TMI, Vol 22, No 9, Sept. 2003, pp. 1163-1171

o    Stephen M. Pizer, Guido Gerig, Sarang Joshi, Stephen R. Aylward, Multiscale Medial Shape-Based Analysis of Image Objects, Proceedings of the IEEE, Special Isasue on: Emerging Medical Imaging Technology, Vol. 91, No. 10, pp. 1670-1679, October 2003 Acrobat Reader format [730Kb]

o    Guihuao Zhai, Weili Lin, Kathy Wilber, Guido Gerig, and John Gilmore, "Comparison of Regional White Matter Diffusion in Healthy Neonate and Adults Using a 3T Head-only MR Scanner", Radiology:229, 2003, pp. 673-681 Acrobat Reader format [330Kb]

o    M. Styner, G. Gerig, Steve Pizer, Sarang Joshi, "Automatic and Robust Computation of 3D Medial Models Incorporating Object Variability", International Journal of Computer Vision (IJCV), O. Faugeras, K. Ikeuchi, and J. Ponce, eds., Vol. 55, No. 2/3, Nov/Dec 2003, pp. 107-122 Acrobat Reader format [330Kb]

o    M. Styner, G. Gerig, J. Lieberman, D. Jones, D. Weinberger, "Statistical shape analysis of neuroanatomical structures based on medial models". Medical Image Analysis (MEDIA, Elsevier), Vol. 7 No. 3, Sept. 2003, pp. 207-220 Acrobat Reader format [6Mb]

o    S. Joshi, P. Lorenzen, G. Gerig, and E. Bullitt, "Structural and Radiometric Asymmetry in Brain Images", Medical Image Analysis Journal, Volume 7, Issue 2, Pages 155-170, Elsevier Science, June 2003.


2003 Peer reviewed full length conference papers

o    Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "Robust Estimation for Brain Tumor Segmentation", Lecture Notes in Computer Science LNCS #2879, pp. 530-537, Nov. 2003 Acrobat Reader format [465Kb]

o    Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", Lecture Notes in Computer Science LNCS #2879, pp. 16-23, Nov. 2003 Acrobat Reader format [525Kb] MICCAI'03 Award: Best Student Paper Image Processing and Visualization

o    Guido Gerig, Keith E. Muller, Emily O. Kistner, Yueh-Yun Chi, Miranda Chakos, Martin Styner, Jeffrey A. Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Lecture Notes in Computer Science LNCS #2879, pp. 653-660, Nov. 2003 Acrobat Reader format [525Kb]

o    Martin Styner, Jeffrey A. Lieberman, and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Lecture Notes in Computer Science LNCS #2879, pp. 464-471, Nov. 2003 Acrobat Reader format [525Kb]

o    Y. Sampath K. Vetsa, Martin Styner, Stephen M. Pizer, Jeffrey A. Lieberman, Guido Gerig, "Caudate shape discrimination in schizophrenia using template-free nonparametric tests", Lecture Notes in Computer Science LNCS #2879, pp. 671-679, Nov. 2003 Acrobat Reader format [300Kb]

o    Elizabeth Bullitt, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, and Weili Lin, "Vascular Attributes and Malignant Brain Tumors", Lecture Notes in Computer Science LNCS #2878, pp. 661-669, Nov. 2003 Acrobat Reader format [216Kb]

o    Pierre Fillard and Guido Gerig, "Analysis Tool For Diffusion Tensor MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 967-968, Nov. 2003 Acrobat Reader format [653Kb]

o    Guido Gerig, Marcel Prastawa, Weili Lin and John Gilmore, "Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 979-980, Nov. 2003 Acrobat Reader format [410Kb]

o    Sean Ho and Guido Gerig, "Scale-Space on Image Profiles About an Object Boundary", in Scale Space, Lecture Notes in Computer Science LNCS-2695, pp. 564-575, Springer, July 2003 Acrobat Reader format [785Kb]


2002 Peer reviewed journal papers

o    Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, image and vision computing "ivc", Vol. 21, Nr. 1, pp. 5-15, Jan. 2002 Acrobat Reader format [600Kb]

o    M.E. Shenton, G. Gerig, R.W. McCarley, G. Szekely, R. Kikinis. "Amygdala-Hippocampus Shape Differences in Schizophrenia: The application of 3D shape models to volumetric MR data", Psychiatry Research Neuroimaging, 2002, 115:15-35 Acrobat Reader format [1.6Mb] Selected for: 2004 IMIA Yearbook of Medical Informatics, Schattauer Publishing Company, Stuttgart, Germany


2002 Peer reviewed full length conference papers

o    Guido Gerig and Martin Styner, Statistical Shape Models for Segmentation and Structural Analysis, invited paper by IEEE International Symposium on Biomedical Imaging (ISBI 2002), Macro to Nano, July 2002 Acrobat Reader format [480Kb]

o    Martin A. Styner, H. C. Charles, Jin Park, and Guido Gerig, Multisite validation of image analysis methods: assessing intra- and intersite variabilityProc. SPIE 4684, 278 (2002); http://dx.doi.org/10.1117/12.467167

o    Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Proc. Medical Image Computing and Computer-Assisted Intervention MICCAI 2002, T. Dohi and R. Kikinis (Eds.), Lecture Notes in Computer Science 2488, September 2002 Acrobat Reader format [540Kb]

o    Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, accepted GMBV 2002 (Workshop: Generative Model-Based Vision, ECCV2002) Acrobat Reader format [600Kb]

o    Sean Ho, Elizabeth Bullitt, and Guido Gerig , Level Set Evolution with Region Competition: Automatic 3-D Segmentation of Brain Tumors, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, IEEE Computer Society, editors: R. Kasturi, D. Laurendeau, C. Suen, Aug 2002, pp. 532-535 Acrobat Reader format [750Kb]

o    Nathan Moon, Elizabeth Bullitt, Koen van Leemput, and Guido Gerig, Model-Based Brain and Tumor Segmentation, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, editors: R. Kasturi, D. Laurendeau, C. Suen, IEEE Computer Society, Aug.2002, pp. 528-531 Acrobat Reader format [410Kb]

o    M. Styner, C. Charles, J. Park, G. Gerig, Multisite validation of image analysis methods - Assessing intra and inter site variability, Proc. SPIE Vol. 4684, p.278-286, Medical Imaging 2002: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Feb. 2002 Acrobat Reader format [0.5Mb] Abstract w. full reference


2001 Peer reviewed journal papers

o    J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J. Wilber, B. Herzberg, M.A. Kliewer, Neonatal Cerebral Ventricle Volume: A Comparison of 3D Ultrasound and Magnetic Resonance Imaging, Ultrasound in Med.& Biol.,27(8), pp. 1143-1146, 2001 Acrobat Reader format [98Kb]

o    E. Bullitt, S. Aylward, E. Bernard, and G. Gerig, Computer assisted Visualization of Arteriovenous Malformations on the Home Personal Computer, Neurosurgery, Vol. 48, No. 3, March 2001


2001 Peer reviewed full length conference papers

o    G. Gerig, M. Styner, D. Jones, D. Weinberger, and J. Lieberman, Shape Analysis of brain ventricles using SPHARM, in Proc. Workshop on Mathematical Methods in Biomedical Image Analysis, Proc. MMBIA 2001, IEEE Computer Society, pp. 171-178, Dec. 2001 Acrobat Reader format [1Mb]

o    M. Styner and G. Gerig, Three-dimensional medial shape representation incorporating object variability, in Proc. Computer Vision and Pattern Recognition CVPR 2001, IEEE Computer Society, pp. 651-656, Dec. 2001 Acrobat Reader format [2.6Mb]

o    G Gerig, M Styner, ME Shenton, JA Lieberman, Shape versus Size: Improved Understanding of the Morphology of Brain Structures, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 24-32, Oct. 2001 Acrobat Reader format [475Kb]

o    G Gerig, M Jomier and M Chakos, VALMET: A new validation tool for assessing and improving 3D object segmentation, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 516-523, Oct. 2001 Acrobat Reader format [170Kb]

o    M. Styner and G. Gerig, Medial models incorporating object variability for 3D shape analysis, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 502-516, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]

o    D. Welti, G. Gerig, E-W. Radue, L. Kappos, and G. Szekely, Spatio-temporal Segmentation of Active Multiple Scleroris Lesions in Serial MRI Data, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 438-445, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]


2000 and earlier


Peer reviewed journal papers

o    M. Styner, G. Gerig, Christian Brechbuehler and Gabor Szekely, Parametric estimate of intensity inhomogeneities applied to MRI, IEEE TMI 19(3), pp. 153-165, 2000 Acrobat Reader format [1.45Kb]

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gábor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Medical Image Analysis (MEDIA), Elsevier, Vol. 4, No. 1, March 2000, pp. 31-42 Acrobat Reader format [900Kb]

o    A. Kelemen, G. Szekely, and G. Gerig, Elastic Model-Based Segmentation of 3-D Neuroradiological Data Sets, IEEE-TMI, Oct. 1999, 18(10):828-839 Acrobat Reader format [1.3Kb] Original TMI Acrobat format [0.62Kb]

o    G. Szekely, A. Kelemen, Ch. Brechbuehler and G. Gerig, Segmentation of 3D objects from MRI volume data using constrained elastic deformations of flexible Fourier surface models, Medical Image Analysis (MEDIA), Vol. 1, No. 1, March 1996, pp. 19-34 gzipped PS-file [4.4Mb] / Acrobat Reader format [3.1Mb]

o    Ch. Brechbühler, G. Gerig and O. Kübler, Parametrization of closed surfaces for 3-D shape description, Computer Vision Image Understanding CVIU, Vol. 61, pp. 154-170, March 1995 Acrobat Reader format [5.1Mb] / Acrobat Reader format, 2pages per sheet [5.2Mb]


Peer reviewed full length conference papers

o    M. Styner and G. Gerig, Hybrid boundary-medial shape description for biologically variable shapes, Proc. of IEEE workshop MMBIA 2000, IEEE, pp. 235-242, June 2000 Acrobat Reader format [2.5Mb]


o    M. Styner and G. Gerig, Brain morphometry by distance measurement in non-Euclidean, curvilinear space, Proc. of IPMI 1999, Springer, LLNCS 1613, pp. 235-242, June 1999 Acrobat Reader format [985Kb]

o    Martin Berger and Guido Gerig, Motion measurements in low contrast X-ray imagery, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 832-841, Oct. 1998 Acrobat Reader format [640Kb]

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 469-480, Oct. 1998 Acrobat Reader format [1Mb]

o    Dimitrios Ekatodramis, Gabor Szekely and Guido Gerig, Detecting and Infering Brain Activation from functional MRI by Hypothesis-Testing based on the Likelihood Ratio, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 578-589, Oct. 1998 Acrobat Reader format [385Kb]


o    Gabor Szekely, Thomas Koller, Ron Kikinis, and Guido Gerig, Structural description and combined 3D display for superior analysis of cerebral vascularity from MRA, Proc. SPIE 2359, 272 (1994); http://dx.doi.org/10.1117/12.185187

o    Christian Brechbuehler, Guido Gerig, and Olaf Kuebler, Surface parametrization and shape description, Proc. SPIE 1808, 80 (1992); http://dx.doi.org/10.1117/12.131069


Books and Book Chapters


o    James S. Duncan and Guido Gerig, "Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2005", Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. LNCS 3749 and 3750

o    Lin, Weili, An, Hongy, Chen, Yasheng, Nicholas, Peter, Zhai, GuiHua, Gerig, Guido, Gilmore, John, and Bullitt, Elizabeth, "Practical Consideration for 3T imaging" , Magn Reson Imaging Clin N Am (W.B. Saunders Company, Elsevier), 11(2003), 615-639 (Book Chapter)

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data, TO BE UPDATED, 2002

o    Guido Gerig, Gabor Szekely, Cyril Burger, Digital Image Processing for functional analysis, in Functional Imaging - Principles and Methods, edited by von Schulthess, Gustav Konrand and Hennig, Jurgen, Lippincott-Raven Publishers, 1998, pp. 115-156

o    Gabor Szekely, Thomas Koller, Ron Kikinis, and Guido Gerig, Structural description and combined 3-D display for superior analysis of cerebral vascularity from MRA, in Medical Imaging, L. Beolchi and M.H. Kuhn, editors, Studies in Health Technology and Informatics, Vol. 19, IOS Press, 1995, pp. 183-194

o    Ross Whitaker and Guido Gerig, Vector-valued diffusion, pp. 93-134, in: Geometry-Driven Diffusion in Computer Vision, edited by Bart M. ter Haar Romeny, Kluwer Academic Publishers, Series on Computational Imaging and Vision, Volume 1, October 1994


Technical Reports


o    Statistical analysis of diffusion tensor image data based on first principles Matthew Gribbin, Meagan Clement, Keith Muller, Michele Poe, Carissa Cascio, Matthew Jomier, Joseph Piven, and Guido Gerig, March 2006

o    Statistics of Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, March 2006

o    Sean Ho and Guido Gerig, Profile Scale Spaces for Statistical Image Match, UNC Technical Report, Jan. 2004

o    Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", UNC Technical Report, Jan. 2004

o    Sean Ho, Heather Cody, Guido Gerig, "SNAP: A Software Package for User-Guided Geodesic Snake Segmentation", Technical Report, April 2003 Acrobat Reader format [1.5Mb]

o    Sean Ho and Guido Gerig, "Profile Scale-Space for Image Segmentation", Technical Report UNC CS, March 2003

o    Ho, Sean and Kim, Yongjik and Bullitt, Elizabeth and Gerig, Guido, Medical image segmentation by 3-D level set evolution, Technical Report UNC Chapel Hill, March 1, 2002 Acrobat Reader format [840Kb]


Abstracts (back to 2001)


·         Rebecca C. Knickmeyer, Y. Sampath K. Vetsa, Weili Lin, Dianne Evans, Kathy Wilber, Keith J. Smith, Guido Gerig, John H. Gilmore A Structural MRI Study of Human Brain Development from Birth to Age 2, accepted abstract /oral presentation SOBP 2007 (Society of Biological Psychiatry)

·         John H. Gilmore, Isabelle Corouge, Weili Lin, Guido Gerig Early Development of White Matter Tracts in the Normal Neonate Assessed with High resolution DTI and Quantitative Tractography, accepted abstract ICOS 2007

·         A. Belger, G. Gerig, J. Blocher, H. Gu, D. O. Perkins, J. H. Gilmore Altered Brain Growth And Structure In Children And Adolescents At Genetic Risk For Schizophrenia, accepted oral presentation/abstract ICOS 2007 (Int. Conf. of Schizophrenia Research)


·         Gilmore John, Vesta Yethiraja, Lin Weili, Gerig Guido, Neonatal DTI, 61th Annual Convention: Society of Biological Psychiatry, May 2006


·         Gilmore John, Looney Christopher, Vesta Yethiraja, Smith J. Keith, Lin Weili, Lieberman Jeffery, Gerig Guido, Early Postnatal Brain Structure and Development in Humans: Sexual Dimorphism and Cerebral Asymmetry are Present at Birth, American Congress of Pharmacology ACNP, Dec. 2005

·         Gerig Guido, Gilmore John H, Jomier Matthieu, Joshi Sarang, Piven Joseph, Computational anatomy to assess growth pattern of early brain development in healthy and disease populations, American Congress of Pharmacology ACNP, Dec. 2005

·         Hazlett, H.C., Poe, M., Smith, R.G., Gerig, G., and Piven, J., UPDATE ON A LONGITUDINAL MRI STUDY OF YOUNG CHILDREN WITH AUTISM, Int. Meeting for Autism Research IMFAR, 2005

·         Guido Gerig , Isabelle Corouge, Clement Vachet, Ranga Krishnan and James MacFall, Quantitative Analysis of Diffusion Properties of White Matter Fiber Tracts: A Validation Study, International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)

·         Guido Gerig, Weili Lin, Sampath Vetsa, John Gilmore, Assessing White Matter Growth Trajectory of Early Neonatal Development by 3T MR-DTI, , International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)

·         G. Gerig and John H. Gilmore, Early Brain Development Assessed by new Quantitative Analysis of structural MRI and DTI, Society of Biological Psychiatry SOBP, Invited Symposium, May 2005

·         G. Gerig, S Joshi, H Gu, D Perkins, RG Steen, R Hamer, JA Lieberman, Automatic pipeline for quantitative brain tissue segmentation and parcellation: Experience with a large longitudinal schizophrenia MRI study, Int. Cong. of Schizophrenia ICOS, March 2005


·         M. El-Sayed, L. Sikich, C. Charles, G. Gerig, M. Styner, S. Joshi, J. Lieberman, Morphometric MRI study in childhood and adolescent psychoses, , 51st Annual Meeting of the AACAP (American Acedemy of Child & Adult Psychiatry), Washington, 2004.

·         G. Gerig and John Gilmore, Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI, American College of Neuropharmacology ACNP, Invited Symposium, Dec. 2004

·         ME Shenton, G Gerig, JS Kwon, C Deutsch, M Kubicki, RW McCarley "Midline-Bacum Septi Pellucidi Abnormalities, Hippocampal Shape Abnormalities, and Diffusion Tensor Corpus Callosum Asymmetry Abnormalities in Schizophrenia", Collegium Internationale Neuro-Psychopharmacologicum XXIVth CINP, June 23 2004

·         Guido Gerig, Pierre Fillard, Marcellinus Prastawa, Weili Lin, John H. Gilmore, "Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI", Society of Biological Psychiatry SOBP, April 29 - May 1, 2004

·         Mohamed Elsayed, Linmarie Sikich, Cecil Charles, Sarang Joshi, Guido Gerig, Jeffrey A. Lieberman, "Volumetric MRI Study in Childhood and Adolescent Psychosis" , Society of Biological Psychiatry SOBP, April 29 - May 1, 2004


·         Guido Gerig, Pierre Fillard, Marcel Prastawa, Weili Lin and John Gilmore, "New quantitative analysis of high-field 3T MRI/DTI to assess neonatal brain development", ACNP 2003, December 2003, Abstract

·         M Styner, G. Gerig, E Kistner, K Muller, JA Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 208, Abstract

·         G Gerig, M Styner, DW Jones, DR Weinberger, JA Lieberman, "Ventricular shape of monozygotic twins discordant for schizophrenia reflects vulnerability", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 194, Abstract

·         JH Gilmore, G Zhai, W Lin, K Wilber, G Gerig, "White Matter Development in Newborns Assessed with Diffusion Tensor Imaging", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 195, Abstract


·         G Gerig, M Styner, M Chakos, JA Lieberman, Hippocampal Shape Alterations in Schizophrenia: Results of a new Methodology, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.

·         M Styner, G Gerig, DW Jones, DR Weinberger, JA Lieberman, Lateralized Differences in ventricular Shape in monozygotic Twins discordant for Schizophrenia, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.


·         M. Styner, D.W. Jones, D Weinberger, JA Lieberman, G Gerig, "Shape analysis of ventricular structures in mono- and dizygotic twin study", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 167, Abstract

·         J Park, G Gerig, M Chakos, *D Vandermeulen, JA Lieberman, "Neuroimaging of Psychiatry Disease: Reliabl e and efficient automatic brain tissue segmentation for increased sensitivity", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 163, Abstract

·         S. Schobel, Miranda Chakos, Guido Gerig, Henry Bridges, Hongbin Gu, Cecil Charles, Jeffrey Lieberman, "Duration and Severity of Illness and Hippocampal Volume in Schizophrenia as Assessed by 3-D Manual Segmentation", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 165, Abstract

·         H Bridges, M Chakos, G Gerig, S Schobel, C Charles, H Gu, J Lieberman, "Association of Duration and Se verity of Illness and Superior Temporal Gyrus Volume as Assessed by 3-D Manual Segmentation Measurements in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 151, Abstract

·         G Gerig, M Jomier, M Chakos, JA Lieberman, "Segmentation of hippocampal shape: Improved reliability by 2D and 3D visualization of segmented objects and of intra-/inter-rater variability", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 154, Abstract

·         M Chakos, S Schobel, G Gerig, Cecil Charles, HB Gu, D Bradford, J Lieberman, "Clinical correlates of Structural Brain Abnormalities in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract

·         J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J.S. Wilbur, B.S. Hertzberg, M.A. Kliever, "Neonatal Cerebral Ventricle volume: A comparison of 3D ultrasound and MRI", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract