2.
Josh Cates

Publications and Other Work.

• J Cates, P T Fletcher, M Styner, H Hazlett, R Whitaker. Particle-Based Shape Analysis of Multi-Object Complexes. Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI '08), to appear.
  
  
• J Cates, P T Fletcher, Z Warnock, R Whitaker. A Shape Analysis Framework for Small Animal Phenotyping with Application to Mice with a Targeted Disruption of Hoxd11. Proceedings of the 5th IEEE International Symposium on Biomedical Imaging (ISBI '08), pp. 512-516, 2008.
  
  
• I Oguz, J Cates, P T Fletcher, R Whitaker, D Cool, S Aylward, M Styner. Entropy-Based Particle Systems and Local Features for Cortical Correspondence Optimization Proceedings of the 5th IEEE International Symposium on Biomedical Imaging (ISBI '08), pp. 1637-1641, 2008.
  
  
• J Cates, P T Fletcher, M Styner, M Shenton, R Whitaker. Shape Modeling and Analysis with Entropy-Based Particle Systems. Information Processing in Medical Imaging IPMI 2007, LNCS 4584, pp. 333-345, 2007.
  
  
• J Cates, P T Fletcher, R Whitaker. Entropy-Based Particle Systems for Shape Correspondence. Mathematical Foundations of Computational Anatomy Workshop, MICCAI 2006. pp. 90-99 Oct 2006. pdf
  
  
• J Cates, D Weinsten, M Davis. The Center for Integrative Biomedical Computing: Advancing Biomedical Science with Open Source IEEE International Symposium on Biomedical Imaging, ISBI 2006. IEEE Link
  
  
• J Cates, A Lefohn, R Whitaker GIST: an interactive, GPU-based level set segmentation tool for 3D medical images. Medical Image Analysis V.8, No.3, pp. 217-231 Sept 2004. (a tech report version is here: pdf)


• J Cates and R Whitaker, Interactive Medical Image Segmentation Using the Insight Toolkit. infoRad Exhibit, Radiological Society of North America Annual Meeting, Nov. 29 - Dec. 5, 2003


• J Cates, Introduction to Image Segmentation with ITK. Variations on this tutorial were presented at IEEE Visualization 2002 - 2003; SPIE Medical Imaging 2003 - 2007; and MICCAI, Montreal, 2003. pdf
  
  
• L. Ibanez, W. Schroeder, L. Ng, J. Cates, The ITK Software Guide, Kitware, Inc., 2003, pdf (big!), buy
  
  
• J. Cates, R. Whitaker, G. Jones, Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation, Medical Image Analysis, V.9, No.6, Dec. 2005. (a tech report version is here: pdf)
  
  
• A. E. Lefohn, J. E. Cates, R. T. Whitaker, Interactive, GPU-Based Level Sets for 3D Brain Tumor Segmentation, Medical Image Computing and Computer Assisted Intervention (MICCAI), 2003. pdf
  
  
• J. Gregor, S. S. Gleason, M. J. Paulus, J. Cates, Fast Feldkamp reconstruction based on focus of attention and distributed computing, International Journal of Imaging Systems and Technology, v. 12, no. 6, 2002, pp: 229-234. pdf
  
  
• J. Cates, Volumetric Reconstruction in the MicroCat Tomography System, Master's thesis, University of Tennessee, 2000. ps and pdf