Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

3DSlicer Extension

800px-SlicerFrogOutputSlicer3D provides a graphical front-end interface for executing Cleaver. After Cleaver completes, Slicer can then read the VTK output into its scene automatically, or manually.

Documentation is located on the 3DSlicer wiki.