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Software News

deformetrica
July 28, 2014

Introducing Deformetrica

Developed in collaboration with INRIA, and available for download at www.deformetrica.org, Deformetrica is a software for the statistical analysis of 2D and 3D shape data. It essentially computes deformations of the 2D or 3D ambient space, which, in turn,… Read more
FEBio2 news
May 29, 2014

FEBio 2.0 Released

It’s with great pleasure that we announce the release of version 2.0 of FEBio (Finite Elements for Biomechanics). This new version can be downloaded here. FEBio is an open-source finite element package, specifically designed for solving problems in the field… Read more
itkSNAP3 news
Jan 09, 2014

itk-SNAP 3.0 Released

The itk-SNAP project, a collaboration between UPenn's Paul Yushkevich and SCI's Guido Gerig, has released a major new version 3.0. SNAP is a software application used to segment structures in 3D medical images. It provides semi-automatic segmentation using… Read more
scirun-4-7
Nov 14, 2013

SCIRun 4.7 with BioMesh3D Released

The SCIRun development team is pleased to announce the release of SCIRun 4.7 with meshing tools. SCIRun 4.7 is available as a binary download for Windows and OS X, and as a source download for Linux. Download Now Click on the Download SCIRun link, and then… Read more
visus-david news
Oct 08, 2013

ViSUS Gigapixel David Available at iTunes App Store

The first gigapixel, multi-view rendering of The Digital Michelangelo Project's David can now be downloaded and viewed on your iPhone, iPad, or iPod touch. The ViSUS Gigapixel David app allows you to explore the digital laser-scan of the statue David in… Read more
fluorender news
Mar 04, 2013

FluoRender 2.12 Released

We are happy to announce the 2.12 release of FluoRender. For details, check the release notes and download FluoRender at www.fluorender.com. Release Notes 03/04/2013FluoRender 2.12 This version includes some improvements and issue fixes: This version includes… Read more
Cleaver news
Dec 04, 2012

Cleaver v1.5 Released

The CIBC development team is pleased to announce the release of Cleaver v1.5. Cleaver is a C++ software library that generates conforming tetrahedral meshes of multimaterial volumetric data, with guarantees on dihedral angles. Cleaver is an implementation of… Read more
iv3d
Oct 24, 2012

ImageVis3D 3.0.0 Released

The ImageVis3D team is proud to announce the release of ImageVis3D 3.0.0! ImageVis3D is a desktop volume rendering application which was designed to visualize large data. Support is available for multiple rendering modes, such as 1D and 2D transfer functions,… Read more
NCRRHistory IV3D
Oct 23, 2012

CIBC and ImageVis3D Mobile Recognized in List of Important Events in NCRR History

Among the list of important events in NCRR history published in the NIH Almanac is the release of the ImageVis3D Mobile visualization app developed under the CIBC. In the events listed for the year 2010 it states:"Researchers led by Chris Johnson at the… Read more
iv3d
Aug 08, 2012

ImageVis3D 2.1.1 and Mobile Universal 4.0 Released

The ImageVis3D team is proud to announce the release of ImageVis3D 2.1.1. DOWNLOAD NOW ImageVis3D is a desktop volume rendering application which was designed to visualize large data. Support is available for multiple rendering modes, such as 1D and 2D… Read more
scirun-4-6
Jun 21, 2012

SCIRun 4.6 with BioMesh3D Released

The SCIRun development team is pleased to announce the release of SCIRun 4.6 with meshing tools. SCIRun 4.6 is available as a binary download for Windows and OS X, and as a source download for Linux. Download Now See also the Release notes. SCIRun 4.6… Read more
fluorender-crop
May 16, 2012

FluoRender Image Among Winners of FASEB BioArt Competition

Congratulations to Yong Wan and Charles Hansen, et al on their winning submission to this year's FASEB BioArt CompetitionA. Kelsey Lewis1, Yong Wan1, Mary Colasanto1, Mark van Langeveld1, Ronen Schweitzer2§, Charles D. Hansen1, and Gabrielle Kardon1§… Read more
epinome
Apr 26, 2012

Epinome: Visual-Analytics for Epidemiology Data

Early detection and rapid response to infectious-disease outbreaks rely on effective decision making based on information from disparate sources. To improve decision-making in outbreak detection and response, it's important to understand how public health… Read more
fluorender
Feb 24, 2012

FluoRender Image Featured in Cell Picture Show

A stunning FluoRender image visualizing embryogenesis is featured in a set on cell.com's "Cell Picture Show." See "Limbs" on slide #8: Limbs By A. Kelsey Lewis, Gabrielle Kardon, Yong Wan (University of Utah) and Ronen Schweitzer (Oregon Health and Science… Read more
scirun-4-5
Oct 27, 2011

SCIRun 4.5 with BioMesh3D Released

The SCIRun development team are pleased to announce the release of SCIRun 4.5 with meshing tools. SCIRun 4.5 is available as a binary download for Windows and OS X, and as a source download for Linux.DownloadRelease notes SCIRun 4.5 contains the new… Read more
febio
Oct 14, 2011

FEBio 1.4 Released

The MRL Software development team is excited to announce the arrival of version 1.4 of FEBio (Finite Elements for Biomechanics). Download FEBio 1.4 FEBio is an open-source finite element package, specifically designed for solving problems in the field of… Read more
iv3d-mobile
Aug 26, 2011

ImageVis3D Mobile 3.0 Released

The ImageVis3D development team is proud to announce the release of ImageVis3D (IV3D) Mobile 3.0! IV3D Mobile is a mobile visualization application designed to visualize and share volume and surface data while you are on the go. With ImageVis3D (available for… Read more
geneology
Jul 01, 2011

SCI and Dept. of Human Genetics Collaborate to Make Geneology Software

Research groups from the Department of Human Genetics and the Scientific Computing and Imaging Institute (SCI) have recently attracted widespread commercial and academic interest in their software inventions related to genetic data processing and the display… Read more
fluorender-release
May 27, 2011

FluoRender 2.8 Released

We are happy to announce the 2.8 release of FluoRender. For details, check the release notes and download FluoRender at www.fluorender.com. Release Notes FluoRender 2.8.0 New Features: Support of importing several manufacturer-specific confocal formats,… Read more
iv3d
Apr 29, 2011

ImageVis3D 2.0 Released

The ImageVis3D team is proud to announce the release of ImageVis3D 2.0. Download ImageVis3D is a desktop volume rendering application which was designed to visualize large data. Support is available for multiple rendering modes, such as 1D and 2D transfer… Read more
david
Mar 21, 2011

ViSUS: One billion polygons to billions of pixels

SCI announces the first gigapixel, multi-view rendering of The Digital Michelangelo Project's David.The David model consists of 933 million triangles from a laser-scan of the original statue created by Professor Marc Levoy and members of The Digital… Read more
seg3d-2-0
Feb 17, 2011

Announcing Seg3D 2.0

We are pleased to announce the next generation Seg3D. Version 2.0 features a new more user-friendly interface, better session and project management, many new filters, and many more improvements to ensure stability. Although most of the functionality from the… Read more
iv3d-mobile-2-0
Dec 09, 2010

ImageVis3D Mobile Universal 2.0 Released

ImageVis3D developers are pleased to announce the release of ImageVis3D Mobile Universal 2.0.It is available from the Apple iTunes App Store. Read more
fluorender-nikon
Dec 09, 2010

Fluorender Used for Prizewinning Photomicrograph

SCI collaborator Hideo Otsuna, won 2nd place in Nikon's Small World photomicrography competition 2010 for his image of a 5-day old zebrafish rendered with FluoRender. Nikon Small World is regarded as the leading forum for showcasing the beauty and complexity… Read more
fluorender-2-7
Nov 30, 2010

FluoRender 2.7 Released

We are happy to announce the 2.7 release of FluoRender. There are some exciting improvements in this version, including a rewritten rendering core, which improves the overall quality and performance of FluoRender. FluoRender can render more fine details,… Read more
visus-news
Oct 27, 2010

ViSUS In The News

ViSUS software has received a great deal of news recently due to it's ability to quickly generate small preview images from very large images. TechEye - Visual imaging software "finds Atlantis" International Business Times, New York - Extreme Resolution… Read more
fluorender-2-6
Sep 10, 2010

FluoRender 2.6 Released

The FluoRender development team is pleased to announce the release of FluoRender 2.6. The new version has a number of new features. For details and downloads see the FluoRender Documentation page. Read more
scirun-4-4
Jul 20, 2010

Announcing SCIRun 4.4 with BioMesh3D

The SCIRun development team is pleased to announce the completion of SCIRun 4.4 with meshing tools. SCIRun 4.4 is available as a binary download for Windows and OS X and as a source download for Linux. The new binaries and source tar archives can be… Read more
vistrails-1-5
Jul 12, 2010

VisTrails 1.5 Released

The VisTrails development team is pleased to announce the release of VisTrails 1.5. The new version contains quite a list of improvements and bug fixes. For details, see the release notes. Download Now Read more
fluorender-2-5
Jun 17, 2010

FluoRender 2.5 Released

The FluoRender development team is pleased to announce the release of FluoRender 2.5. The new version has a number of new features. For details and downloads see the FluoRender Documentation page. Read more
iv3d-nuclear
May 07, 2010

ImageVis3D Mobile Goes Nuclear

SALT LAKE CITY -- The future of computers is here, and University of Utah scientists keep pushing the envelope. They have developed new imaging programs that turn complex data into brilliant pictures you can view on your iPhone or iPad. ImageVis3D Mobile… Read more
febio
Feb 20, 2010

MRL Releases FEBio 1.2

Febio 1.2.0 is now available for download. It includes several new features including: faster, multi-threaded linear solvers (Pardiso, SuperLU) contact improvements such as improved stability for large compression problems a new biphasic contact algorithm to… Read more
vistrails-1-4
Jan 12, 2010

Announcing VisTrails 1.4

The VisTrails development team is pleased to announce the release of VisTrails 1.4. The new version contains quite a list of improvements and bug fixes. For details, see the release notes.Download Now Read more
un-climate
Jan 11, 2010

Advanced Climate Change Visualization Presented at UN Climate Change Conference

The VACET Center played a key roll in the production of the following visualization of historical and projected climate change data that was presented to participants at the UN Climate Change Conference in Copenhagen in December of 2009. The animated series… Read more
paraviewvistrails
Jan 05, 2010

ParaView Now Includes the VisTrails Provenance Plugin

Kitware, Sandia National Laboratories and Los Alamos National Lab have released ParaView 3.6.2. The latest release now includes the VisTrails Provenance Explorer plugin in the Windows and Linux packages. VisTrails is an open-source scientific workflow and… Read more
iv3d-mobile-app
Oct 09, 2009

ImageVis3D Mobile iPhone App Hits the News

The release of ImageVis3D Mobile for the iPhone has received wide coverage.In addition to a news story on KSL channel 5, it has generated a number of print articles such as: The Daily Utah Chronicle: "U researchers develop iPhone applications" Macworld:… Read more
iv3d-mobile
Sep 21, 2009

ImageVis3D Mobile now available

ImageVis3D Mobile for the iPhone is now available from Apple iTunes App store. Read more
vistrails-1-3
Jul 06, 2009

Announcing VisTrails 1.3 and 1.2.2

The VisTrails development team is happy to announce the release of two new versions of VisTrails. Version 1.3 contains lots of new features, improvements and a new version of the user's guide. Version 1.2.2 contains lots of bug fixes and it's basically a… Read more
iv3d
May 29, 2009

ImageVis3D Released

The ImageVis3D team is proud to announce the release of ImageVis3D 1.0!ImageVis3D is a desktop volume rendering application which was designed to visualize large data. Support is available for multiple rendering modes, such as 1D and 2D transfer functions,… Read more
shapeworks
May 11, 2009

Introducing ShapeWorks

The ShapeWorks software is an open-source distribution of a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific surface parameterization. The method requires very little… Read more
sci-moran
Apr 09, 2009

SCI and Moran Eye Center Collaboration Completes Map of Eye Neurocircuitry

A SCI research team, lead by Dr. Tolga Tasdizen and Dr. Ross Whitaker, in collaboration with Dr. Robert Marc and his team at the Moran Eye Center have recently completed a 3D neurocircuitry map of every cell in the retina of a rabbit's eye. This data is a… Read more
vt-maya
Mar 31, 2009

VisTrails Provenance Explorer for Maya Wins Utah Innovation Award

Congratulations are in order to the VisTrails team. Their Provenance Explorer for Maya has won the Utah 2009 Innovation Award. VisTrails Inc., a SCI spin off company, was one of just nine companies to be awarded a Utah Innovation award for 2009. This award is… Read more
scirun-4-0
Dec 16, 2008

SCIRun Version 4.0 Released

The NIH/NCRR Center for Integrative Biomedical Computing (CIBC) is pleased to announce the release of the 4.0 version of the SCIRun software suite. SCIRun is a problem solving environment for biomedical problems that is based on a dataflow paradigm. The new… Read more
news-bytes
Dec 16, 2008

FEBio Profiled in BioMedical Computation

FEBio software profiled in Spring 2008 issue of BioMedical Computation. Download the pdf here Read more
vistrails fig1 sm
Nov 01, 2007

Announcing VisTrails 1.0

Fig 1: The VisTrails history tree contains a node for each version of a workflow (or pipeline) as it evolves over time. This results in a complete audit trail of the steps that were taken in a computational task. VisTrails is a new system that provides data… Read more
map3d-6-5
Jul 14, 2007

map3d 6.5 Now Available

The Scientific Computing and Imaging Institute and the Center for Integrative Biomedical Computing are proud to announce the release of map3d version 6.5! This release includes a number of fixes and additions to the display settings for map3d and major new… Read more
febio
Mar 14, 2007

MRL Releases FEBio 1.0 Software Suite

The Scientific Computing and Imaging Institute and the Musculoskeletal Research Laboratories are proud to announce the 1.0 release of the software FEBio, "Finite Elements for Biomechanics". FEBio is a nonlinear finite element software package that is… Read more
scijump
Mar 14, 2007

SCIRun Meets CCA: SCIJump Released for Testing

SCIJump is a computational environment or framework based on the Common Component Architecture (CCA) standard for high performance component frameworks in the scientific computing domain. The SCIJump framework builds on the SCI Institute's SCIRun Problem… Read more
icd placement05 small
Feb 15, 2007

Announcing SCIRun/BioPSE 3.0

BioPSE network computing the effects of electrode placement on the electrical field in the heart and hence evaluating the defibrillation threshold. The Scientific Computing and Imaging (SCI) Institute and the Center for Integrative Biomedical Computing (CIBC)… Read more
scirun-1-24
Mar 13, 2005

SCIRun/BioPSE 1.24.2 Now Available

Thanks to everyone for their feedback on the 1.24.0-beta pre-release. Based on your suggestions, we fixed important bugs over the past few weeks, and we added many great new features as well. This version of SCIRun/BioPSE contains a new PowerApp called… Read more
bioimage
Mar 13, 2005

SCIRun ported to SGI Prism

The SCI Institute is proud to announce the availability of SCIRun on the Silicon Graphics PrismTM visualization system. The combination of large memory, parallel CPUs and advanced graphics capabilities on the Silicon Graphics Prism provide an ideal platform… Read more
map3d-5-2
Jul 23, 2001

map3d 5.2 now Available

map3d is a scientific visualization application developed at the Nora Eccles Harrison Cardiovascular Research and Training (CVRTI) and the Scientific Computing and Imaging Institute (SCI) at the University of Utah. The original purpose of the program was to… Read more
scirun-vert
Jul 10, 2001

SCIRun 1.2.0 Released

The SCI Institute proudly releases SCIRun version 1.2.0. In direct response to feedback from program users and collaborators, this version contains several new features. New Features of SCIRun v1.2.0 Dynamic Compilation and Loading PETSc SLES support Disjoint… Read more