Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

General News CIBC

1000014743Congratulations to Jake Bergquist who received the Heart Rhythm Society fellowship award. This is a one year, $50,000 fellowship to support research in cardiac electrophysiology.

bergquist2This year at computing in cardiology I presented two talks, both on the subject of uncertainty quantification in the context of electrocardiographic imaging. Uncertainty quantification is a technique to understand how models such as those we use to simulate or estimate the activity of the heart respond to errors or variability in the inputs to these models.

We are excited to announce the new release of our software, ShapeWorks 6.3!

To download installation packages for Windows/Mac/Linux and/or the source code, please visit https://github.com/SCIInstitute/ShapeWorks/releases/tag/v6.3.0

zengerCongratulations to Brian Zenger for receiving the Outstanding Dissertation Award for 2021 from the College of Engineering!

"Experimental Examination of Partial Occlusion Acute Myocardial Ischemia"

Lindsay AnnaAnna Busatto and Lindsay Rupp, PhD students in the Biomedical Engineering Department and the SCI Institute, who study with Dr. Rob MacLeod and the CEG group, were two of the thirty accepted participants for the Simula Summer School in Computational Physiology 2022. This summer-long program is a unique opportunity for graduate students to participate in lectures and projects, first in Oslo, Norway and then in San Diego, CA. A big benefit is the chance to network with mentors and graduate students from around the world. By getting accepted to the summer school, Anna and Lindsay also receive travel support and accommodations for both components of the program.
9 kardonGabrielle Kardon, Ph.D., a professor of Human Genetics at University of Utah Health, is a recipient of a 2021 Pew Charitable Trust Innovation Award. She is one of 12 accomplished scientists with expertise in molecular biology, genetics, immunology, neuroscience, or other key fields who were selected to investigate critical issues linked to human health.

We are excited to announce the new release of our software, ShapeWorks 6.2!

To download installation packages for Windows/Mac/Linux and/or the source code, please visit https://github.com/SCIInstitute/ShapeWorks/releases/tag/v6.2.0


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FluoRender: Rapid Quantitative Analysis and Adaptive Workflows for Fluorescence Microscopy Data in Fundamental Biomedical Research

FluoRender is a software package for interactive visualization and analysis of multichannel and multidimensional fluorescence microscopy data. This project will continue to serve the pressing needs of biologists utilizing fluorescence microscopy for flexible and reliable data analysis. FluoRender also addresses the problems in fundamental biomedical research that demand rapid measurements and workflow prototyping.

release6.1We are excited to announce the new release of our software, ShapeWorks 6.1!

To download installation packages for Windows/Mac/Linux and/or the source code, please visit https://github.com/SCIInstitute/ShapeWorks/releases/tag/v6.1.0
We are excited to announce the new release of our software, ShapeWorks 6.0!

To download installation packages for Windows/Mac/Linux and/or the source code, please visit https://github.com/SCIInstitute/ShapeWorks/releases/tag/v6.0.0

Authors:

SCI Institute, University of Utah: Jess Tate, Daniel White, Alexandra Warner, Ross Whitaker, Christopher Johnson, Rob MacLeod

Kitware: Will Schroeder, Jean-Christophe Fillion-Robin, Dženan Zukić, Matt McCormick, and Lee Newberg

Story originally appears on the Kitware Blog

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