Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Large scale visualization on the Powerwall.
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

General News CIBC

Rob 2012 desk smScientific Computing and Imaging (SCI) Institute faculty member Rob MacLeod has been elected as President of the Board of Directors for the Computing in Cardiology Society for the next three years.

Research with Fluorender highlighted on the NIH Director's Blog.
Posted on July 27, 2017 by Dr. Francis Collins

muscles limbdevelopment g kardonTwice a week, I do an hour of weight training to maintain muscle strength and tone. Millions of Americans do the same, and there's always a lot of attention paid to those upper arm muscles—the biceps and triceps. Less appreciated is another arm muscle that pumps right along during workouts: the brachialis. This muscle—located under the biceps—helps your elbow flex when you are doing all kinds of things, whether curling a 50-pound barbell or just grabbing a bag of groceries or your luggage out of the car.

for theresaThe University of Utah Neuroscience Initiative recently announced Christopher Butson, PhD, Associate Professor in Bioengineering and the Scientific Computing and Imaging Institute, was awarded funding for his project, "Differentiating Neural Circuits Modulated During Therapeutic Versus Ineffective Deep Brain Stimulation".

scix adSCI Institute Technical Exchange (SCI X) was created to strengthen the interactions between the SCI Institute and other academic researchers, and also those companies conducting or wishing to conduct research with the University and inspire them to increase their collaborative efforts in research and new product development. 

SCI X is intended to provide its guests access to unique resources and expertise found within the SCI Institute, creating an expanded relationship between the SCI  Institute and our past, present and future academic and industry collaborators.

Fire2016 PanelAlex Lex, Bei Wang Phillips, and Chris Johnson were chosen to present at the Future in Review Conference held at the Stein Eriksen Lodge in Park City, Utah.

What is Future in Review? Hosted by Mark Anderson, founder and publisher of the Strategic News Service™, the Future in Review® (FiRe) conference exposes world experts and participants to new ideas in a manner that produces an accurate portrait of the future in technology, including the global economy, cloud computing, biology and medical diagnostics, policy, netbooks, space travel, sustainability, and other fields that contribute to technology outcomes. (Strategic News Service and the SNS weekly global report have been accurately predicting the technology industry's future since 1995.)

This year's theme was titled "The Power of Flows."
Photo courtesy of Kris Krüg
sciencenodeChris Johnson speaks with ScienceNode on visualizations as a collaborative process of discovery, and a crucial step on path to knowledge.

Read the full article here.
butson groupOver $10 Million in grants from three federal organizations have been awarded to Christopher R. Butson, PhD, associate professor of bioengineering and a member of the Scientific Computing and Imaging Institute (SCI). He also holds positions in the departments of neurology and neurosurgery and is the Director of Neuromodulation Research for the Department of Neurosurgery and works with teams of researchers at the University of Utah and other institutions in the U.S. and Germany.

The National Institutes of Health (NIH) has awarded funds for a clinical study on central thalamic deep brain stimulation for traumatic brain injury. This clinical study is led by Butson and other teams including Nicholas Schiff M.D. at Cornell University, Joseph Giacino Ph.D. at the Spaulding Rehabilitation Hospital in Boston, Jaimie Henderson M.D. at Stanford and Andre Machado M.D. at the Cleveland Clinic. These teams are working on a feasibility study to support a next generation device to provide therapy for the survivors of severe to moderate traumatic brain injury.

Press Release 15-107

Gigabit application prototypes to help cities and communities serve citizens better

NSF awards nearly $12 million to expand innovation ecosystem for next-generation Internet applications

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NSF announced nearly $12 million awards that build on the successful efforts of US Ignite.
Credit and Larger Version
September 14, 2015

The United States lags behind most developed countries in terms of high-speed Internet availability. Though there are signs this is changing, insufficient investment in gigabit networks--those capable of 1,000 megabits per second, roughly 30 times faster than the networks commonly available today--threatens to limit U.S. leadership in Internet applications and services.

IMAGEVIS3DThe U's Center for Integrative Biomedical Computing just landed a $6.1 million grant renewal from the National Institutes of Health. The center produces open-source software for image-based modeling, simulation and visualization of biomedical data. Tens of thousands of scientists have downloaded the center's software tools and data sets, and more than 200 papers published by scientists outside the center reference its software or computing infrastructure.

The NIH grant has a five year term. The principle investigators are bioengineering professor Rob MacLeod, computer science professor Ross Whitaker, and computer science professor Christopher Johnson, who directs the Scientific Computing and Imaging Institute.

From @theU
btrportalThe NIH Center for Integrative Biomedical Computing (CIBC) is pleased to release the National Institutes of Health Biomedical Technology Resource Portal (NIH BTRPortal). The NIH BTRPortal maintains profiles for all National Institute of General Medical Sciences (NIGMS) and National Institute of Biomedical Imaging and Bioengineering (NIBIB) P41 Centers and provides central access to resources developed at these Centers. Recent participation has grown this repository to over 200 software packages and access to over 60 datasets/databases.

As a result of our funding for this project, the CIBC has developed a custom website in order to manage different user rolls, search scenarios, and the editing and addition of new Centers and their resources. Resources are tagged with the appropriate filters and keywords based on an extensive search through resource descriptions (OS, acceptable data formats, data size, field of research, etc.). It is our hope that participating Centers will create additional keywords to not only aid in finding resources, but also cross-educate other Centers to the nature of their research. It is our further hope that this Portal will enhance collaboration between Centers and leverage the great work that has already been done.

www.btrportal.org