Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.
Angiogenesis, or the formation of new blood vessels, is a critical part of tissue growth and healing processes. Understanding the underlying mechanisms of this process and how it affects the perfused tissues is fundamental to many issues in medicine. For example, control of angiogenesis could help bones and tissues to heal faster or with better results. In contrast, the inhibition of angiogenesis in some cases could stop the development unwanted tissues such as a tumor, or slow the healing process for better results. Controlled angiogenesis is also important for engineering of new tissues or possibly whole organs needed to replace damaged ones. Researchers in the Musculoskeletal Research Laboratories (MRL) at the SCI Institute are investigating the angiogenesis process and how it effects tissue development. They are also developing computer models to accurately simulate this process and predict the effects of angiogenesis on the mechanical properties of tissues.

vessel growth diag

Growth of new blood vessels from existing ones.




Day 0
To observe angiogenesis, a blood vessel fragment has been isolated and placed in a collagen gel.

vessel sprouts
Day 8
The vessel fragment has sprouted several capillary branches.

Day 28
The vessel construct has been implanted into live tissue and is supplying blood.

Angiogenesis is one of the first steps in the healing process following an injury. For example, a ligament injury produces a vigorous inflammatory response that can cause rapid blood vessel formation, increasing the amount of vessels in the tissues by more than ten times in just a few days following the injury. Some amount of angiogenesis and inflammation is considered necessary for the eventual remodeling and repair of tissues. However, the relationship between the intensity of blood vessel development and the rate and results of healing are unknown. Greater understanding of this process would be extremely valuable for aiding the natural course of tissue healing, and for the design and engineering of tissue replacements. Although angiogenesis is a necessary step for tissue healing, the process also has the potential to affect the mechanical integrity of the healing (and potentially the healed) tissue.

An aspect currently under investigation deals with how the infiltration of blood vessels affects the material properties of the tissues. The working hypothesis is that tissues are weakened as the density of blood vessels increases. MRL researchers are testing this hypothesis by growing networks of blood vessels in a collagen gel substrate. At fixed time points during angiogenesis, the material properties of the vascularized collagen scaffold are characterized to test its rigidity and subject the growing blood vessels to stress.

The relationships between globally applied stresses and strains and the resulting stresses and strains experienced at the tips of the growing capillaries are being investigated using a computational mechanics methodology called the Material Point Methods (MPM). The software framework was largely developed under another SCI Institute collaboration project, The Center for the Simulation of Accidental Fires and Explosions (C-SAFE). This method simulates any material with a series of points that have a number of properties. In this case, MPM works by modeling the collagen lattice and growing capillaries with a number of points on a background grid. Each point carries information about the mechanical properties of the tissue it represents including it's motion and how strongly it is bound to the neighboring tissues. As the simulation progresses, the grid is stretched to represent the mechanical stress being imposed on the tissues and the points are carried along with it. The grid is reset to an undeformed state on each cycle but the points are left at their new locations and the process is repeated. Material Point Methods have proven to be an efficient and effective way to simulate all kinds of mechanical systems.



vessel mpm stressed vessel stress-map
An MPM simulation of a microvessel undergoing axial extension. Red indicates areas of highest stress load. (collagen not shown for clarity) Distribution of von Mises stress (Pa) for the 3D model under 10% axial extension. Note the highly inhomogeneous stress distribution and the vertical channeling of stresses through the microvessels.


This multidisciplinary collaborative project is currently funded by the National Institutes of Health (NHLBI R01 HL077683).

Principal Researchers

Search SCI Publications

See Also:

B.R. Shepherd, H.Y. Chen, C.M. Smith, G. Gruionu, S.K. Williams, and J.B. Hoying. "Rapid Perfusion and Network Remodeling in a Microvascular Construct after Implantation," In Arterioscler Thromb Vasc Biol. Vol. 24, No. 5, pp. 898--904, 2004.

Versions Available: [ PubMed ]

J.B. Hoying and C.A. Boswell and S.K. Williams. "Angiogenic Potential of Microvessel Fragments Established in Three-Dimensional Collagen Gels,"In Vitro Cell Dev Biol Anim Vol. 32, No. 7, pp. 409--419, 1996.

Versions Available: [ PubMed ]