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Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

Events on September 4, 2015

Roxana Bujack

Roxana Bujack Presents:

Moment Invariants in Flow Visualization

September 4, 2015 at 12:00pm for 1hr
Evans Conference Room, WEB 3780
Warnock Engineering Building, 3rd floor.

Roxana Bujack graduated in mathematics and computer science and received her PhD in the Image and Signal Processing group at Leipzig University in Germany. Currently, she is a Postdoctoral Researcher at the Institute for Data Analysis and Visualization (IDAV) at the University of California, Davis with Prof. Kenneth I. Joy. Her research interests include flow visualization, pattern recognition in vector fields, moment invariants, and Clifford analysis.

Abstract:

Moment invariants are powerful function descriptors. They have been well studied and often used on scalar fields because they are robust, intuitive, and able to represent objects independent from their specific position, orientation, and scale. Their extension to vector valued functions forms a valuable foundation for several flow visualization tasks, like pattern detection, feature categorization,
and clustering.

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Lawrence Frank

Lawrence Frank, University of California, San Diego Presents:

Imaging as Exploration

September 4, 2015 at 2:00pm for 1hr
Evans Conference Room, WEB 3780
Warnock Engineering Building, 3rd floor.

Bio: Prof Lawrence R. Frank received his Ph.D in Physics from MIT and is the founder and Director of the UCSD Center for Scientific Computation in Imaging (CSCI). His primary focus has been in the development of novel methods of magnetic resonance imaging (MRI) used in conjunction with computational methods to address research questions in a variety of topics such cardiac biomechanics, evolutionary biology, and characterization of neural architecture. The work at CSCI has recently expanded to the development of general theoretical frameworks and computational methods for the analysis of spatial-temporal data in imaging for the use in a broad range of applications from dynamic imaging of brain activity with functional MRI to severe weather meteorology.

Abstract:

Advances in modern digital imaging methods are revolutionizing a wide range of scientific disciplines by facilitating the acquisition of huge amounts of data that allow the visualization,measurement, reconstruction, and archiving of complex, multi-dimensional images. At the same time, advances in computing technologies have enabled the deployment of tremendous computing resources, enabling numerical modeling of a broad gamut of scientific phenomena,and resulting in the production of vast quantities of numerical data. These data are just the starting point for the scientific exploration that modern computational and visualization methods enable. But these advanced data generation capabilities come at a cost: with increasing data size and complexity, a premium is now placed on the development of more efficient acquisition and analysis methods. In this lecture, Dr. Frank will discuss how this new paradigm of imaging as exploration is manifest and how the increasing generality of our analysis approaches has led to very general method for data analysis applicable to such disparate fields as brain imaging and severe weather.

Posted by: Deb Zemek