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Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

Events on November 24, 2014

Christopher R. Butson

Christopher R. Butson Presents:

Doing the right thing when you are left in the dark: a practical review of left/right orientation in medical imaging

November 24, 2014 at 12:00pm for 1hr
Evans Conference Room, WEB 3780
Warnock Engineering Building, 3rd floor.

Abstract:

Many types of medical images (e.g. MRI, CT) are produced as slices that are acquired along one principal axis. In this format, left/right orientation is almost always ambiguous, regardless of the principal axis along which the images are viewed. To address this issue, conventions have been adopted to properly orient images (e.g. the radiology convention). However, these conventions have been applied in ways that can lead to additional ambiguity, an issue that has been exacerbated with the proliferation of 3D volume construction from 2D image stacks. In this talk I will:

  1. Briefly illustrate why accurate orientation of medical images is an important issue for clinical diagnosis and treatment, and why left/right is often ambiguous compared to body-based coordinate directions (i.e. medial/lateral, dorsal/ventral, anterior/posterior, rostral/caudal, superior/inferior).
  2. Demonstrate how left/right orientation is specified in raw images, and how it can be inadvertently flipped in 2D or 3D renderings when using a variety of open source and commercial software packages.
  3. Demonstrate practical techniques we have adopted to make sure that left is right and right isn't left behind, pun intended.

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