Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.
In this ongoing project, funded by NIBIB/NIH, we collected eye-tracking data, as a proof-of-concept of a non-intrusive way of providing localization information on labels associated with each chest x-ray read by radiologists.

The REFLACX (Reports and Eye-Tracking Data for Localization of Abnormalities in Chest X-rays) dataset contains 3,032 cases of eye-tracking data collected while a radiologist dictated reports for images from the MIMIC-CXR dataset, paired and synchronized with timestamped transcriptions of the dictations. It also contains manual labels for each image, including bounding boxes localizing the lungs and heart and validation labels of image-level abnormalities and localization of abnormalities through drawn ellipses.

Contacts

PI: Tolga Tasdizen, This email address is being protected from spambots. You need JavaScript enabled to view it.
Research assistant: Ricardo Bigolin Lanfredi, This email address is being protected from spambots. You need JavaScript enabled to view it.
Lead radiologist: Joyce D. Schroeder, This email address is being protected from spambots. You need JavaScript enabled to view it.