2009

Y. Pan, R.T. Whitaker, A. Cheryauka, D. Ferguson. “Feasibility of GPU-Assisted Iterative Image Reconstruction for Mobile C-ARM CT,” In Proceedings of SPIE Medical Imaging 2009, pp. (accepted). 2009.

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E. Jurrus, M. Hardy, T. Tasdizen, P.T. Fletcher, P. Koshevoy, C.-B. Chien, W. Denk, R.T. Whitaker. “Axon Tracking in Serial Block-Face Scanning Electron Microscopy,” In Medical Image Analysis (MEDIA), Vol. 13, No. 1, Elsevier, pp. 180--188. February, 2009.

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J.R. Anderson, B.W. Jones, J.-H. Yang, M.V. Shaw, C.B. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R.E. Marc. “A Computational Framework for Ultrastructural Mapping of Neural Circuitry,” In PLoS Biology, Vol. 7, No. 3, pp. e74. 2009.

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J. Anderson, B. Jones, J. Yang, M. Shaw, C. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, Kannan U.V., R.T. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc. “Ultra Structural Mapping of Neural Circuitry: A Computational Framework,” In IEEE International Symposium on Biomedical Engineering (ISBI 2009), pp. (accepted). 2009.

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E. Jurrus, A.R.C. Paiva, S. Watanabe, R.T. Whitaker, E.M. Jorgensen, T. Tasdizen. “Serial Neural Network Classifier for Membrane Detection using a Filter Bank.,” SCI Technical Report, No. UUSCI-2009-006, SCI Institute, University of Utah, 2009.

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W.-K. Jeong, J. Beyer, M. Hadwiger, A. Vazquez, H. Pfister, R.T. Whitaker. “Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets,” In IEEE Transactions on Visualization and Computer Graphics, Proceedings of the 2009 IEEE Visualization Conference, pp. (accepted). Sept/Oct, 2009.

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M. Datar, J. Cates, P.T. Fletcher, S. Gouttard, G. Gerig, R.T. Whitaker. “Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging,” In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI ’09), pp. (to appear). 2009.

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R. Tao, P.T. Fletcher, R.T. Whitaker. “An Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI,” In Proceedings of Information Processing in Medical Imaging, pp. (to appear). 2009.

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R.S. MacLeod, J.G. Stinstra, S. Lew, R.T. Whitaker, D.J. Swenson, M.J. Cole, J. Krueger, D.H. Brooks, C.R. Johnson. “Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples,” In Philosophical Transactions of The Royal Society A, Mathematical, Physical & Engineering Sciences, Vol. 367, No. 1896, pp. 2293--2310. 2009.

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S. Gerber, T. Tasdizen, S. Joshi, R.T. Whitaker. “On the Manifold Structure of the Space of Brain Images,” In Proceedings of the 2009 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009), pp. (to appear). 2009.

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S. Gerber, T. Tasdizen, R.T. Whitaker. “Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds,” In Proceedings of the 2009 International Conference on Computer Vison (ICCV 2009), pp. (to appear). 2009.

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2008

E. Jurrus, R.T. Whitaker, B. Jones, R. Marc, T. Tasdizen. “An Optimal-Path Approach for Neural Circuit Reconstruction,” In Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1609--1612. 2008.

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J. Cates, P.T. Fletcher, Z. Warnock, R.T. Whitaker. “A Shape Analysis Framework for Small Animal Phenotyping with Application to Mice with a Targeted Disruption of Hoxd11,” In Proceedings of the 5th IEEE International Symposium on Biomedical Imaging (ISBI '08), pp. 512--516. 2008.

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J. Cates, P.T. Fletcher, M. Styner, H. Hazlett, R.T. Whitaker. “Particle-Based Shape Analysis of Multi-Object Complexes,” In Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI '08), Lecture Notes In Computer Science (LCNS), pp. 477--485. 2008.
ISBN: 978-3-540-85987-1

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I. Oguz, J. Cates, P.T. Fletcher, R.T. Whitaker, D. Cool, S. Aylward, M. Styner. “Cortical Correspondence using Entropy-Based Particle Systems and Local Features,” In 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008. (ISBI 2008), pp. 1637--1640. 2008.

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W.-K. Jeong, R.T. Whitaker. “A Fast Iterative Method for Eikonal Equations,” In SIAM Journal on Scientific Computing, pp. (accepted). 2008.

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M. Meyer, R.T. Whitaker, R.M. Kirby, C. Ledergerber, H. Pfister. “Particle-based Sampling and Meshing of Surfaces in Multimaterial Volumes,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 14, No. 6, pp. 1539--1546. 2008.

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2007

S. Gerber, T. Tasdizen, R.T. Whitaker. “Robust Non-linear Dimensionality Reduction using Successive 1-Dimensional Laplacian Eigenmaps,” In Proceedings of the 2007 International Conference on Machine Learning (ICML), pp. 281--288. 2007.

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J. Cates, P.T. Fletcher, M. Styner, M. Shenton, R.T. Whitaker. “Shape Modeling and Analysis with Entropy-Based Particle Systems,” In Proceedings of Information Processing in Medical Imaging (IPMI) 2007, LNCS 4584, pp. 333--345. 2007.

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M. Meyer, B. Nelson, R.M. Kirby, R.T. Whitaker. “Particle Systems for Efficient and Accurate Finite Element Visualization,” In IEEE Transactions on Visualization and Computer Graphics, pp. 1015--1026. 2007.

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