Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2009


 N.S. Phatak, S.A. Maas, A.I. Veress, N.A. Pack, E.V. DiBella, J.A. Weiss. “Strain Measurement in the Left Ventricle During Systole with Deformable Image Registration,” In Medical Image Analysi, Vol. 13, No. 2, pp. 354--361. 2009.

2008


 N.S. Phatak, S.A. Maas, A.I. Veress, N.A. Pack, E.V.R. Di Bella, J.A. Weiss. “Strain measurement in the left ventricle during systole with deformable image registration,” In Medical Image Analysis, pp. (in press). 2008.


A.I. Veress, J.A. Weiss, R.H. Huesman, B.W. Reutter, S.E . Taylor, A. Sitek, B. Feng, Y. Yang, G.T. Gullberg. “Measuring Regional Changes in the Diastolic Deformation of the Left Ventricle of SHR Rats Using MicroPET Technology and Hyperelastic Warping,” In Annals of Biomedical Engingeering, Vol. 36, No. 7, pp. 1104--1017. 2008.

2007


 N.S. Phatak, Q. Sun, S.-E. Kim, D.L. Parker, R.K. Sanders, A.I. Veress, B.J. Ellis, J.A. Weiss. “Noninvasive Determination of Ligament Strain with Deformable Image Registration,” In Annals of Biomedical Engineering, Vol. 35, No. 7, pp. 1175--1187. February, 2007.

2006


 A.I. Veress, W.P. Segars, J.A. Weiss, B.M.W. Tsui, G.T. Gullberg. “Normal and Pathological NCAT Image and Phantom Data Based on Physiologically Realistic Left Ventricle Finite Element Models,” In IEEE Transactions on Medical Imaging, Vol. 25, No. 12, pp. 1604--1616. 2006.


J.A. Weiss, A.I. Veress, G.T. Gullberg, N.S. Phatak, Q. Sun, D.L. Parker, R.D. Rabbitt. “Strain measurement using deformable image registration,” In Mechanics of Biological Tissue, Edited by G.A. Holzapfel, R.W. Ogden, Springer, pp. 489--501. 2006.
DOI: 10.1007/3-540-31184-x_35

2005


 A.I. Veress, G.T. Gullberg, J.A. Weiss. “Measurement of Strain in the Left Ventricle with Cine-MRI and Deformable Image Registration,” In ASME J. Biom. Eng., Vol. 127, No. 7, pp. 1195--1207. July 21, 2005.

2004


 N.S. Phatak, J.L. McCann, Q. Sun, S.E. Kim, D.L. Parker, E.K. Jeong, R.K. Sanders, A.I. Veress, J.A. Weiss. “Noninvasive Measurement of Ligament Strain,” In Proceedings of 50th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, Vol. 29, pp. 893. March, 2004.


A.I. Veress, N. Phatak, J.A. Weiss. “Deformable Image Registration with Hyperelastic Warping,” In Topics in Biomedical Engineering International Book Series, Edited by J.S. Suri and D.L Wilson and S. Laxminarayan, Springer, pp. 487--533. 2004.
DOI: 10.1007/0-306-48608-3_12


A.I. Veress, W.P. Segars, B.M.W. Tsui, J.A. Weiss, G.T. Gullberg. “Physiologically Realistic LV Models to Produce Normal and Pathological Image and Phantom Data,” In Proceedings of the IEEE Medical Imaging Conference, Rome, October, 2004.

2002


 A.I. Veress, J.A. Weiss, G.T. Gullberg, D.G. Vince, R.D. Rabbitt. “Strain Measurement In Coronary Arteries Using Intravascular Ultrasound And Deformable Images,” In ASME J. Biom. Eng., Vol. 124, pp. 734--741. 2002.