Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2004


T.J. Lujan, M.S. Dalton, S.P. Lake, B.J. Ellis, T.D. Rosenberg, J.A. Weiss. “ACL Injury Alters MCL Strain During Anterior-Posterior but not Varus-Valgus Loading,” In Proceedings of 50th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, Vol. 29, pp. 1272. March, 2004.



R.S. Macleod, D.M. Weinstein, J.D. de St. Germain, D.H. Brooks, C.R. Johnson, S.G. Parker. “SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization,” In Proceedings of the Int. Symp. on Biomed. Imag., Arlington, Va, pp. 640--643. April, 2004.



M. Magnor, G. Kindlmann, C.D. Hansen, N. Duric. “Constrained Inverse Volume Rendering for Planetary Nebulae,” In Proceeding of IEEE Visualization 2004, pp. 83--90. 2004.



A. Mascarenhas, M. Isenburg, V. Pascucci, J. Snoeyink. “Encoding Volumetric Meshes For Streaming Isosurface Extraction,” In Proceedings of the International Symposium on 3D Data Processing, Visualization, and Transmission (3DPVT), Note: UCRL-PROC-208696, pp. 293--300. September, 2004.



P. McCormick, J. Inman, J. Ahrens, G. Roth, C.D. Hansen. “Hardware-Accelerated System for Quantitatively Driven Visualization and Analysis,” In Proceeding of IEEE Visualization 2004, pp. 171--178. 2004.



A. Paoluzzi, V. Pascucci, G. Scorzelli. “Progressive BSP Representation and Boolean Operations for Dimension-Independent Polyhedra,” In ACM Symposium on Solid Modeling, Note: UCRL-PROC-208679, pp. 203-211. June, 2004.



V. Pascucci. “Isosurface Computation Made Simple: Hardware Acceleration, Adaptive Refinement and Tetrahedral Stripping,” In Proceedings of the Joint Eurographics - IEEE TVCG Symposium on Visualization (VisSym), Note: UCRL-CONF-202459, pp. 293--300. May, 2004.



S. Pesco, P. Lindstrom, V. Pascucci, C.T. Silva. “Implicit Occluders,” In Proceeding of IEEE Volume Visualization 2004, pp. 47--54. 2004.



N.S. Phatak, J.L. McCann, Q. Sun, S.E. Kim, D.L. Parker, E.K. Jeong, R.K. Sanders, A.I. Veress, J.A. Weiss. “Noninvasive Measurement of Ligament Strain,” In Proceedings of 50th Annual Meeting of the Orthopaedic Research Society, San Francisco, CA, Vol. 29, pp. 893. March, 2004.



S.D. Ramsey, J.T. Johnson III, C.D. Hansen. “Adaptive Temporal Tone Mapping,” In Computer Graphics and Imaging, pp. 124--128. 2004.



F. B. Sachse. “Computational Cardiology: Modeling of Anatomy, Electrophysiology, and Mechanics,” LNCS 2966, Springer, Berlin, Heidelberg, New York 2004.



A.A. Samsonov, C.R. Johnson.. “Removal of Intensity Bias in Magnitude Spin-Echo MRI Images by Nonlinear Diffusion Filtering,” In Proceedings of SPIE Medical Imaging 2004, San Diego, CA, Vol. 5370, pp. 743--752. 2004.



A.A. Samsonov, C.R. Johnson. “Non-Cartesian POCSENSE,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 2648. 2004.



A.A. Samsonov, C.R. Johnson. “Unbiased Nonlinear Filtering of Fast Spin Echo MRI Images,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 760. 2004.



A.A. Samsonov, E.G. Kholmovski, C.R. Johnson. “Phase-Constrained Reconstruction of Sensitivity-Encoded MRI Data with POCSENSE,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), Kyoto, Japan, pp. 2647. 2004.



A.A. Samsonov, C.R. Johnson. “Noise-Adaptive Nonlinear Diffusion Filtering of MR Images with Spatially Varying Noise Levels,” In Magn. Reson. Med., Vol. 52, pp. 798--806. 2004.



A.A. Samsonov, E.G. Kholmovski, D.L. Parker, C.R. Johnson. “POCSENSE: POCS-based reconstruction for sensitivity encoded MRI,” In Magn. Reson. Med., Vol. 52, pp. 1397--1406. 2004.



A.A. Samsonov, C.R. Johnson. “Multicoil MRI Artifacts Correction Using Parallel Pocs,” In Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM), 2004.



A.R. Sanderson, C.R. Johnson, R.M. Kirby. “Display of Vector Fields Using a Reaction Diffusion Model,” In Proceeding of IEEE Visualization 2004, pp. 115--122. 2004.



U. Schmitt, C.H. Wolters, A. Anwander, T. Knoesche. “STR: A New Spatio-Temporal Approach for Accurate and Efficient Current Density Reconstruction,” In Proceedings of The 14th International Conference on Biomagnetism, pp. 591--592. 2004.