Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Deep brain stimulation
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications

2002


 R.S. MacLeod, Q. Ni, B. Taccardi. “Modeling Cardiac Bioelectricity in Realistic Volumes: How Real is Real?,” In Einthoven 2002, Leiden, Edited by M.J. Schalij and M.J. Janse and A. van Oosterom and H.J.J. Wellens and E.E. van der Wall, The Einthoven Foundation, pp. 45-56. 2002.


R.S. MacLeod, E.D. DiBella, B.B. Punske, E.K. Jeong. “Multimodal Imaging of Cardiac Activation, Perfusion, and Ischemia,” In 14th Annual Research Symposium of the Medical Imaging Research Laboratory, 2002.


Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod. “Including Sparse Noisy Epicardial Potential Measurements Into Bayesian Inverse Electrocardiography,” In Proceedings of EMBC 2002, 2002.


Y. Serinagaoglu, R.S. MacLeod, B. Yilmaz, D.H. Brooks. “Multielectrode Venous Catheter Mapping as a High Quality Constraint for Electrocardiographic Inverse Solution,” In J. Electrocardiol., Vol. 35 (supplement), 2002.


B. Taccardi, B.B. Punske, R.S. MacLeod, Q. Ni. “Visualization, Analysis and Physiological Interpretation of Three-dimentional Cardiac Electric Fields,” In Proceedings of 24th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2002.

2001


 S. Gumhold, X. Wang, R.S. MacLeod. “Feature Extraction from Point Clouds,” In Proceedings, 10th International Meshing Round Table, Sandia National Laboratories, pp. 293--305. 2001.


R.S. MacLeod, B. Yilmaz, B. Taccardi, B.B. Punske, Y. Serina, D.H. Brooks. “Direct and Inverse Methods for Cardiac Mapping Using Multielectrode Catheter Measurements,” In Journal of Biomedizinische Technik, Vol. 46(supp), pp. 207--209. 2001.


R.S. MacLeod, B.B. Punske, B. Yilmaz, S. Shome, B. Taccardi. “The Role of Heart Rate in Myocardial Ischemia From Restricted Coronary Perfusion,” In J. Electrocardiol., Vol. 34 (supp), Note: ISCE conference paper, pp. 43--51. 2001.


B. Taccardi, B.B. Punske, R.S. MacLeod, Q. Ni. “Extracardiac Effects of Myocardial Electrical Anisotropy,” In Biomed. Technik, Vol. 46(suppl 2), pp. 216--218. 2001.


L. Zhukov, D.M. Weinstein, C.R. Johnson, R.S. Macleod. “Spatio-temporal Multi-dipole Source Localization Using ICA and Lead-Fields in FEM Head Models,” In Proceedings of the IEEE Engineering in Medicine and Biology Society 23rd Annual International Conference, Istanbul, Turkey Oct, 2001.

2000


 D.M. Weinstein, L. Zhukov, C.R. Johnson, S.G. Parker, R. Van Uitert, R.S. MacLeod, C.D. Hansen. “Interactive Source Imaging with BioPSE,” In Chicago 2000 World Congress on Medical Physics and Biomedical Engineering, Chicago, IL., Note: Refereed abstract., July, 2000.

1999


 D.H. Brooks, G.F. Ahmad, R.S. MacLeod, G.M. Maratos. “Inverse Electrocardiography by Simultaneous Imposition of Multiple Constraints,” In IEEE Trans Biomed. Eng., Vol. 46, No. 1, pp. 3--18. 1999.

1998


 C.R. Johnson, R.S. MacLeod. “Adaptive local regularization methods for the inverse ECG problem,” In Progress in Biophysics and Biochemistry, Vol. 69, No. 2/3, pp. 405. Dec, 1998.

1997


 R.N. Klepfer, C.R. Johnson, R.S. MacLeod. “The Effects of Inhomogeneities and Anisotropies on Electrocardiographic Fields: A Three-Dimensional Finite Element Study,” In IEEE Transactions on Biomedical Engineering, Vol. 44, No. 8, pp. 706--719. August, 1997.

1996


 C.R. Johnson, R.S. MacLeod. “Local regularization and adaptive methods for the inverse Laplace problem,” In Biomedical and Life Physics, Edited by D.N. Ghista, Vieweg-Verlag, Braunschweig pp. 224--234. 1996.


R.N. Klepfer, C.R. Johnson, R.S. MacLeod. “The effects of inhomogeneities and anisotropies on electrocardiographic fields: A three-dimensional finite element study,” In IEEE Trans. on Biomedical Engineering, 1996.

1995


 C.R. Johnson, R.S. MacLeod, J.A. Schmidt. “Software Tools for Modeling, Computation, and Visualization in Medicine,” In CompMed 94 Proceedings, World Scientific, 1995.


R.N. Klepfer, C.R. Johnson, R.S. MacLeod. “The Effects of Inhomogeneities and Anisotropies on Electrocardiographic Fields: A Three-Dimensional Finite Element Study,” In IEEE Engineering in Medicine and Biology Society 17th Annual International Conference, IEEE Press, pp. 233--234. 1995.


J.A. Schmidt, C.R. Johnson, J.C. Eason, R.S. MacLeod. “Applications of Automatic Mesh Generation and Adaptive Methods in Computational Medicine,” In Modeling, Mesh Generation, and AdaptiveMethodsforPartial Differential Equations, Edited by I. Babuska and J.E. Flaherty and W.D. Henshaw and J.E. Hopcroft and J.E. Oliger and T. Tezduyar, Springer-Verlag, pp. 367--390. 1995.


J.A. Schmidt, C.R. Johnson, R.S. MacLeod. “An Interactive Computer Model for Defibrillation Device Design,” In International Congress on Electrocardiology, ICE, pp. 160--161. 1995.