Designed especially for neurobiologists, FluoRender is an interactive tool for multi-channel fluorescence microscopy data visualization and analysis.
Large scale visualization on the Powerwall.
BrainStimulator is a set of networks that are used in SCIRun to perform simulations of brain stimulation such as transcranial direct current stimulation (tDCS) and magnetic transcranial stimulation (TMS).
Developing software tools for science has always been a central vision of the SCI Institute.

SCI Publications


R.D. Rabbitt, J.A. Weiss, G.E. Christensen, M.I. Miller. “Mapping of Hyperelastic Deformable Templates Using the Finite Element Method,” In Proc SPIE (Vision Geometry IV), Vol. 2573, pp. 252--265. 1995.

J.A. Schmidt, C.R. Johnson, J.C. Eason, R.S. MacLeod. “Applications of Automatic Mesh Generation and Adaptive Methods in Computational Medicine,” In Modeling, Mesh Generation, and AdaptiveMethodsforPartial Differential Equations, Edited by I. Babuska and J.E. Flaherty and W.D. Henshaw and J.E. Hopcroft and J.E. Oliger and T. Tezduyar, Springer-Verlag, pp. 367--390. 1995.

J.A. Schmidt, C.R. Johnson. “Defibsim: An Interactive Defibrillation Device Design Tool,” In IEEE Engineering in Medicine and Biology Society 17th Annual International Conference, IEEE Press, pp. 305--306. 1995.

J.A. Schmidt, C.R. Johnson, R.S. MacLeod. “An Interactive Computer Model for Defibrillation Device Design,” In International Congress on Electrocardiology, ICE, pp. 160--161. 1995.

H.W. Shen, C.R. Johnson. “Sweeping Simplices: A Fast Iso-surface Extraction Algorithm for Unstructured Grids,” In IEEE Visualization `95, IEEE Press, pp. 143--150. 1995.

P.A. Sleigh, P.H. Gaskell, M. Berzins, J.M. Ware, N.G. Wright. “A Reliable and Accurate Technique for the Modelling of Practically Occurring Open Channel Flow,” In Proceedings of the Ninth International Conference on Numerical Methods in Laminar and Turbulent Flow, Pineridge Press, pp. 881--892. 1995.

W. Speares, M. Berzins. “A Fast 3-D Unstructured Mesh Adaptation Algorithm with Time-Dependent Upwind Euler Shock Diffraction Calculations,” In Proc. of 6th International Symposium on Computational Fluid Dynamics, Vol. 3, Edited by M. Hafez and K. Oshima, pp. 1181--1188. 1995.

W. Speares, M. Berzins. “A 3D Unstructured Mesh Adaption Algorithm for Time Dependent Shock Dominated Problems,” School of Computer Studies Research Report, No. 95.33, University of Leeds, 1995.

A. Tomlin, J.M. Ware, J. Smith, M. Berzins, M.J. Pilling. “Efficient High Resolution Methods for Air Pollution Models,” In International Conference on Air Pollution - Proceedings, Vol. 1, Computational Mechanics Inc, pp. 201--208. 1995.

R. Troutman, C.D. Hansen. “Binary-Swap Shear-Warp Volume Renderer on the T3D,” In Cray Users Group Conference, Fairbanks, Ak., pp. 93--102. September, 1995.

W.B. Tung, C.D. Hansen, D.R. Jones, W.H. Chen, H.A. Al-Sunaidi. “Development of an Interactive Reservoir Simulation and Visualization System for a Massively Parallel Processor,” In 5th ARCHIE Conference: Visualization Technology to Find and Develop more Oil and Gas, The Woodlands, Texas, Note: Refereed abstract., pp. 105--107. May, 1995.

C. Walshaw, M. Berzins. “Dynamic Load-Balancing For PDE Solvers On Adaptive Unstructured Meshes,” In Concurrency, Vol. 7, No. 1, pp. 17--28. 1995.

C. Walshaw, M. Berzins. “Adaptive Time-dependent CFD on Distributed Unstructured Meshes,” In Parallel Computational Fluid Dynamics: New Trends and Advances, Elsevier Science, pp. 191--198. 1995.

J.M. Ware, M. Berzins. “Adaptive Finite Volume Methods for Time-dependent P.D.E.s.,” In Modeling, Mesh Generation and Adaptive Numerical Methods for PDEs., IMA Volumes in Mathematics and Its Applications Series, Vol. 75, Springer Verlag, pp. 417--430. 1995.

D.M. Weinstein, C.R. Johnson, J.A. Schmidt. “Effects of Adaptive Refinement on the Inverse EEG Solution,” In SPIE, In Experimental and Numerical Methods for Solving Ill-Posed Inverse Problems, Vol. 2570, SPIE, pp. 2--11. 1995.

D.M. Weinstein, C.R. Johnson. “Hierarchical Data Structures for Interactive Volume Visualization,” School of Computing Technical Report, No. UUCS-95-012, University of Utah, Salt Lake City, UT 1995.

R.T. Whitaker. “Algorithms for Implicit Deformable Models,” In Fifth International Conference on Computer Vision'95, pp. 822--827. 1995.


S. Adelson, C.D. Hansen. “Fast Stereoscopic Images with Ray-Traced Volume Rendering,” In Symposium on Volume Visualization, Washington, DC., pp. 3--9. October, 1994.

M. Berzins, J.M. Ware. “Reliable Finite Volume Methods for the Navier Stokes Equations.,” In Numerical methods for the Navier-Stokes equations, Notes on Numerical Fluid Mechanics, No. 47, Edited by F.K. Hebeker and R. Rannacher and G. Wittum, Springer, pp. 1-8. 1994.
DOI: 10.1007/978-3-663-14007-8_1

C.S. Gitlin, C.R. Johnson. “Techniques for Visualizing 3D Unstructured Meshes,” School of Computing Technical Report, No. UUCS-94-018, University of Utah, 1994.